[med-svn] r20645 - in trunk/packages/flexbar/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-12-05 22:24:20 +0000 (Sat, 05 Dec 2015)
New Revision: 20645

Added:
   trunk/packages/flexbar/trunk/debian/patches/
   trunk/packages/flexbar/trunk/debian/patches/fix_bashism.patch
   trunk/packages/flexbar/trunk/debian/patches/series
Modified:
   trunk/packages/flexbar/trunk/debian/changelog
Log:
Fix bashisms in tests


Modified: trunk/packages/flexbar/trunk/debian/changelog
===================================================================
--- trunk/packages/flexbar/trunk/debian/changelog	2015-12-05 22:01:50 UTC (rev 20644)
+++ trunk/packages/flexbar/trunk/debian/changelog	2015-12-05 22:24:20 UTC (rev 20645)
@@ -1,3 +1,10 @@
+flexbar (2.50-2) UNRELEASED; urgency=medium
+
+  * Fix bashisms in tests
+    Closes: #772255
+
+ -- Andreas Tille <tille at debian.org>  Sat, 05 Dec 2015 23:22:22 +0100
+
 flexbar (2.50-1) unstable; urgency=medium
 
   * New upstream version (patches applied)

Added: trunk/packages/flexbar/trunk/debian/patches/fix_bashism.patch
===================================================================
--- trunk/packages/flexbar/trunk/debian/patches/fix_bashism.patch	                        (rev 0)
+++ trunk/packages/flexbar/trunk/debian/patches/fix_bashism.patch	2015-12-05 22:24:20 UTC (rev 20645)
@@ -0,0 +1,213 @@
+Description: Fix bashisms in tests
+Bug-Debian: http://bugs.debian.org/772255
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sat, 05 Dec 2015 23:22:22 +0100
+
+--- a/test/flexbar_test_csfasta.sh
++++ b/test/flexbar_test_csfasta.sh
+@@ -7,7 +7,7 @@ a=`diff correct_result_right.csfasta res
+ if ! $a ; then
+ echo "Error testing right mode csfasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 1 OK"
+ fi
+@@ -20,7 +20,7 @@ a=`diff correct_result_left.csfasta resu
+ if ! $a ; then
+ echo "Error testing left mode csfasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 2 OK"
+ fi
+@@ -33,7 +33,7 @@ a=`diff correct_result_any.csfasta resul
+ if ! $a ; then
+ echo "Error testing any mode csfasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 3 OK"
+ fi
+@@ -46,7 +46,7 @@ a=`diff correct_result_left_tail.csfasta
+ if ! $a ; then
+ echo "Error testing left_tail mode csfasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 4 OK"
+ fi
+@@ -59,7 +59,7 @@ a=`diff correct_result_right_tail.csfast
+ if ! $a ; then
+ echo "Error testing right_tail mode csfasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 5 OK"
+ fi
+--- a/test/flexbar_test_csfastq.sh
++++ b/test/flexbar_test_csfastq.sh
+@@ -7,7 +7,7 @@ a=`diff correct_result_right.csfastq res
+ if ! $a ; then
+ echo "Error testing right mode csfastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 1 OK"
+ fi
+@@ -20,7 +20,7 @@ a=`diff correct_result_left.csfastq resu
+ if ! $a ; then
+ echo "Error testing left mode csfastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 2 OK"
+ fi
+@@ -33,7 +33,7 @@ a=`diff correct_result_any.csfastq resul
+ if ! $a ; then
+ echo "Error testing any mode csfastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 3 OK"
+ fi
+@@ -46,7 +46,7 @@ a=`diff correct_result_left_tail.csfastq
+ if ! $a ; then
+ echo "Error testing left_tail mode csfastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 4 OK"
+ fi
+@@ -59,7 +59,7 @@ a=`diff correct_result_right_tail.csfast
+ if ! $a ; then
+ echo "Error testing right_tail mode csfastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 5 OK"
+ fi
+--- a/test/flexbar_test_fasta.sh
++++ b/test/flexbar_test_fasta.sh
+@@ -7,7 +7,7 @@ a=`diff correct_result_right.fasta resul
+ if ! $a ; then
+ echo "Error testing right mode fasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 1 OK"
+ fi
+@@ -20,7 +20,7 @@ a=`diff correct_result_left.fasta result
+ if ! $a ; then
+ echo "Error testing left mode fasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 2 OK"
+ fi
+@@ -33,7 +33,7 @@ a=`diff correct_result_any.fasta result_
+ if ! $a ; then
+ echo "Error testing any mode fasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 3 OK"
+ fi
+@@ -46,7 +46,7 @@ a=`diff correct_result_left_tail.fasta r
+ if ! $a ; then
+ echo "Error testing left_tail mode fasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 4 OK"
+ fi
+@@ -59,7 +59,7 @@ a=`diff correct_result_right_tail.fasta
+ if ! $a ; then
+ echo "Error testing right_tail mode fasta"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 5 OK"
+ fi
+--- a/test/flexbar_test_fastq.sh
++++ b/test/flexbar_test_fastq.sh
+@@ -7,7 +7,7 @@ a=`diff correct_result_right.fastq resul
+ if ! $a ; then
+ echo "Error testing right mode fastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 1 OK"
+ fi
+@@ -20,7 +20,7 @@ a=`diff correct_result_left.fastq result
+ if ! $a ; then
+ echo "Error testing left mode fastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 2 OK"
+ fi
+@@ -33,7 +33,7 @@ a=`diff correct_result_any.fastq result_
+ if ! $a ; then
+ echo "Error testing any mode fastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 3 OK"
+ fi
+@@ -46,7 +46,7 @@ a=`diff correct_result_left_tail.fastq r
+ if ! $a ; then
+ echo "Error testing left_tail mode fastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 4 OK"
+ fi
+@@ -59,7 +59,7 @@ a=`diff correct_result_right_tail.fastq
+ if ! $a ; then
+ echo "Error testing right_tail mode fastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test 5 OK"
+ fi
+--- a/test/flexbar_test_zip.sh
++++ b/test/flexbar_test_zip.sh
+@@ -7,7 +7,7 @@ a=`diff correct_result_right.fastq resul
+ if ! $a ; then
+ echo "Error testing right mode gzip fastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test gzip OK"
+ fi
+@@ -20,7 +20,7 @@ a=`diff correct_result_right.fastq resul
+ if ! $a ; then
+ echo "Error testing right mode bzip2 fastq"
+ echo $a
+-exit -1
++exit 1
+ else
+ echo "Test bzip2 OK"
+ fi

Added: trunk/packages/flexbar/trunk/debian/patches/series
===================================================================
--- trunk/packages/flexbar/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/flexbar/trunk/debian/patches/series	2015-12-05 22:24:20 UTC (rev 20645)
@@ -0,0 +1 @@
+fix_bashism.patch