[med-svn] r20650 - in trunk/packages/mafft/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2015-12-05 22:43:54 +0000 (Sat, 05 Dec 2015)
New Revision: 20650

Added:
   trunk/packages/mafft/trunk/debian/patches/
   trunk/packages/mafft/trunk/debian/patches/fix_bashism.patch
   trunk/packages/mafft/trunk/debian/patches/series
Modified:
   trunk/packages/mafft/trunk/debian/changelog
Log:
Fix bashism


Modified: trunk/packages/mafft/trunk/debian/changelog
===================================================================
--- trunk/packages/mafft/trunk/debian/changelog	2015-12-05 22:40:23 UTC (rev 20649)
+++ trunk/packages/mafft/trunk/debian/changelog	2015-12-05 22:43:54 UTC (rev 20650)
@@ -1,6 +1,8 @@
 mafft (7.266-1) UNRELEASED; urgency=medium
 
   * New upstream version
+  * Fix bashism
+    Closes: #772305
 
  -- Andreas Tille <tille at debian.org>  Sat, 05 Dec 2015 23:32:35 +0100
 

Added: trunk/packages/mafft/trunk/debian/patches/fix_bashism.patch
===================================================================
--- trunk/packages/mafft/trunk/debian/patches/fix_bashism.patch	                        (rev 0)
+++ trunk/packages/mafft/trunk/debian/patches/fix_bashism.patch	2015-12-05 22:43:54 UTC (rev 20650)
@@ -0,0 +1,16 @@
+Description: Fix bashism
+Bug-Debian: http://bugs.debian.org/772305
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sat, 05 Dec 2015 23:32:35 +0100
+
+--- a/core/mafft.tmpl
++++ b/core/mafft.tmpl
+@@ -1874,7 +1874,7 @@ if [ $# -gt 0 ]; then
+ 
+ 		if [ $enrich -eq 1 ]; then
+ 			if [ $ownlist != "/dev/null" ]; then
+-				echo "Warning: Sequence homologs of the structures given with the --pdbfilelist option cannot be collected.\n" 1>>"$progressfile"
++				printf "Warning: Sequence homologs of the structures given with the --pdbfilelist option cannot be collected.\n" 1>>"$progressfile"
+ 			fi
+ 			echo "SEEKQUENCER (http://sysimm.ifrec.osaka-u.ac.jp/seekquencer/) is" 1>>"$progressfile"
+ 			if [ $pdblist != "/dev/null" ]; then

Added: trunk/packages/mafft/trunk/debian/patches/series
===================================================================
--- trunk/packages/mafft/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/mafft/trunk/debian/patches/series	2015-12-05 22:43:54 UTC (rev 20650)
@@ -0,0 +1 @@
+fix_bashism.patch