[med-svn] [libtabixpp] 02/03: Merge tag 'upstream/0.0.20151117'

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository libtabixpp.

commit e17342b6b8d98ff4e05746a863294e620caf7136
Merge: 58408e0 8af1d9f
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sun Dec 6 12:48:03 2015 +0000

    Merge tag 'upstream/0.0.20151117'
    
    Upstream version 0.0.20151117

 .gitmodules           |   3 +
 ChangeLog             | 593 ------------------------------
 Makefile              |  90 ++---
 NEWS                  | 126 -------
 README                |   6 -
 README.md             |   5 +
 TabixReader.java      | 395 --------------------
 bam_endian.h          |  42 ---
 bedidx.c              | 156 --------
 bgzf.c                | 714 ------------------------------------
 bgzf.h                | 157 --------
 bgzip.c               | 206 -----------
 example.gtf.gz        | Bin 3778 -> 0 bytes
 example.gtf.gz.tbi    | Bin 259 -> 0 bytes
 index.c               | 998 --------------------------------------------------
 khash.h               | 486 ------------------------
 knetfile.c            | 632 --------------------------------
 knetfile.h            |  75 ----
 kseq.h                | 227 ------------
 ksort.h               | 271 --------------
 kstring.c             | 165 ---------
 kstring.h             |  68 ----
 main.c                | 290 ---------------
 perl/MANIFEST         |   8 -
 perl/Makefile.PL      |   8 -
 perl/Tabix.pm         |  76 ----
 perl/Tabix.xs         |  71 ----
 perl/TabixIterator.pm |  41 ---
 perl/t/01local.t      |  28 --
 perl/t/02remote.t     |  28 --
 perl/typemap          |   3 -
 python/setup.py       |  55 ---
 python/tabixmodule.c  | 408 ---------------------
 python/test.py        |  91 -----
 tabix.1               | 132 -------
 tabix.cpp             |  85 +++--
 tabix.h               | 145 --------
 tabix.hpp             |  17 +-
 tabix.py              |  87 -----
 tabix.tex             | 121 ------
 40 files changed, 107 insertions(+), 7002 deletions(-)

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