[med-svn] [bart] annotated tag v0.2.09d created (now 8380311)

[Martin Uecker]

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uecker-guest pushed a change to annotated tag v0.2.09d
in repository bart.

        at  8380311   (tag)
   tagging  fc30b693ca8b8d0aafc90c082046cb33aaac32a5 (commit)
  replaces  v0.2.09
 tagged by  Martin Uecker
        on  Sun Dec 6 23:57:07 2015 +0100

- Log -----------------------------------------------------------------
Debian-med package 0.2.09
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Frank Ong (12):
      added multi-scale low rank option for pics
      removed warning about locally low rank in pics
      added divergence free wavelet thresholding, locally low rank thresholding and wavelet thresholding options to threshold.c
      Merge branch 'master' of https://github.com/frankong/bart
      added lrdecom to do multi-scale low rank decomposition
      merge bart
      Merge branch 'master' of https://github.com/mrirecon/bart
      add .gitignore default target in Makefile, add doc/commands.txt to .gitignore
      Merge branch 'master' of https://github.com/mrirecon/bart
      Merge branch 'master' of https://github.com/mrirecon/bart
      changed lrdecom to lrmatrix. added matrix completion ability
      make bartview show file name

Jonathan Tamir (13):
      specify scale factor
      pics: add "-W <image>" for warm start
      join: add option to load files based on input format (see -h for usage)
      join: remove [-p] and show example using seq tool in help
      homodyne: options to clear unacquired portion and input ref phase
      fix bug with gpu less than or equal to kernel
      add {less,greater} than or equal to prox function and corresponding multind/vecops functions
      add real-value prox op
      update copyright/contributions
      add some doxygen comments
      free before return statement
      actually free before return
      gitignore bbox

Martin Uecker (43):
      Merge pull request #10 from mikgroup/join-parfile
      update version.txt
      add warning for missing step size
      fixes for linking everything together
      bart with all commands (bbox for fast compilation)
      ignore priv for .coo
      avoid compilation problems
      add median filter
      fix for multiple penalties with gpu
      update URL
      add rule to autogenerate doc/commands.txt
      phantom: make k-space center consistent with rest of bart
      if we plan an in-place FFT we need to use it in-place
      use bart command in matlab wrapper
      add rule for C++ files
      add code to increase stack limit
      relax cuda fft constraints
      remove -lcuda
      Merge pull request #11 from mrirecon/md-prox-updates
      Makefile improvements
      fix for 3D CUFFT
      missing bracket
      Merge pull request #12 from sidward/master
      Merge pull request #13 from sidward/master
      Merge pull request #14 from frankong/master
      make README markdown friendly and add link for README.md
      README improvements
      add (median) filter tool
      fix for unitialized singular values for degenerate calibration matrix
      don't set debug_level
      shorten description of -W option, cosmetics
      fix warnings
      add missing const
      add install target, only build bart by default, remove commands.txt
      add manpage
      fix install on Mac OS X
      Merge pull request #15 from frankong/master
      add Sid to ACKNOWLEDGEMENTS
      make bart matlab script look for system-wide bart
      make git-version.sh more robust
      Makefile improvements
      rework main dispatch
      fix const

Siddharth (10):
      Added noise estimation cmd: estvar
      Made estvar a member of libcalib.
      Added a missing free
      Minor changes
      Minor changes
      Added soft-weighting. Still need to debug
      Soft weighting
      soft-thresholding implemented.
      Added abstract reference
      Added references

Siddharth Iyer (1):
      Forcing evecs estimate to not use orthiter fixes soft-weighting map estimate problem

-----------------------------------------------------------------------

This annotated tag includes the following new commits:

       new  53b631b   added lrdecom to do multi-scale low rank decomposition
       new  b2f5336   merge bart
       new  1966516   Merge branch 'master' of https://github.com/mrirecon/bart
       new  c04a198   Merge branch 'master' of https://github.com/mrirecon/bart
       new  b02cdc5   Merge branch 'master' of https://github.com/mrirecon/bart
       new  5e9bf80   changed lrdecom to lrmatrix. added matrix completion ability
       new  7ad77df   Merge pull request #15 from frankong/master
       new  263f961   make bartview show file name
       new  12d2968   add Sid to ACKNOWLEDGEMENTS
       new  67660b3   make bart matlab script look for system-wide bart
       new  ccf350d   make git-version.sh more robust
       new  f3f6d1a   Makefile improvements
       new  d689d04   rework main dispatch
       new  fc30b69   fix const

The 14 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


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