[med-svn] [andi] branch upstream updated (def050e -> abc0e9a)

[Fabian Klötzl]

This is an automated email from the git hooks/post-receive script.

kloetzl-guest pushed a change to branch upstream
in repository andi.

      from  def050e   Imported Upstream version 0.9.4.1
      adds  abc0e9a   Imported Upstream version 0.9.5

No new revisions were added by this update.

Summary of changes:
 .travis.yml                 |  10 ++---
 Makefile.am                 |   1 +
 README.md                   |   6 +--
 andi-manual.pdf             | Bin 420249 -> 423356 bytes
 configure.ac                |  12 ++++--
 docs/andi.1.in              |   2 +-
 docs/manual/andi-manual.tex |  58 ++++++++++++++++++++++------
 libs/pfasta.c               |  49 ++++++++++++++++++------
 libs/pfasta.h               |   9 +++++
 src/Makefile.am             |   7 +---
 src/andi.c                  |  32 ++++++++++++++--
 src/esa.c                   |   4 +-
 src/global.h                |   2 +
 src/io.c                    |  40 ++++++++++++-------
 src/process.c               |  91 +++++++++++++++++++++++++++++++++++++++++++-
 src/sequence.c              |   4 +-
 test/test_join.sh           |   6 +--
 17 files changed, 266 insertions(+), 67 deletions(-)

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