[med-svn] [relion] branch master updated (078edf0 -> a69a16d)
Roland Fehrenbacher
rfehren-guest at moszumanska.debian.org
Tue Dec 8 18:57:51 UTC 2015
This is an automated email from the git hooks/post-receive script.
rfehren-guest pushed a change to branch master
in repository relion.
from 078edf0 Make new install files d/lib*.install executable (needed for dh-exec to work)
adds 1c61897 Imported Upstream version 1.3
adds c062815 Imported Upstream version 1.3+dfsg
new a366454 Imported Upstream version 1.4+dfsg
new bb28731 Merge tag 'upstream/1.4+dfsg'
new 9a24e9e d/patches: Remove obsolete 0002-Fix-autopicking-buffer-overflow.patch
new 1753c6b d/patches: Add 0002-Add-ml_optimiser_mpi.cpp-length_fn_ctf-patch.patch
new 475171c d/changelog: Update for new upstream
new 8f9153f Rename d/*.install + d/*.lintian-overrides (1.3 -> 1.4)
new 23d5eab d/lib*-dev.install: Change in include path (1.3 -> 1.4)
new 75bd2c5 d/control: Rename lib packages + fix conflicts (close: #797825)
new eb1df55 d/*.lintian-overrides: Adjust for new libname (1.3 -> 1.4)
new a69a16d Update d/changelog with detailed bug fix message
The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
INSTALL.sh | 23 +-
Makefile.am | 34 +-
Makefile.in | 60 +-
autogen.sh | 4 +-
config.h.in | 6 +
configure | 268 +-
configure.ac | 50 +-
debian/changelog | 8 +
debian/control | 44 +-
debian/librelion+gui-1.3-1v5.lintian-overrides | 8 -
...1.3-1v5.install => librelion+gui-1.4-1.install} | 0
debian/librelion+gui-1.4-1.lintian-overrides | 6 +
debian/librelion+gui-dev.install | 2 +-
debian/librelion+mpi+gui-1.3-1v5.lintian-overrides | 8 -
...1v5.install => librelion+mpi+gui-1.4-1.install} | 0
debian/librelion+mpi+gui-1.4-1.lintian-overrides | 6 +
debian/librelion+mpi+gui-dev.install | 16 +-
debian/librelion+mpi-1.3-1v5.lintian-overrides | 7 -
...1.3-1v5.install => librelion+mpi-1.4-1.install} | 0
debian/librelion+mpi-1.4-1.lintian-overrides | 5 +
debian/librelion+mpi-dev.install | 14 +-
debian/librelion-1.3-1v5.lintian-overrides | 2 -
...ion-1.3-1v5.install => librelion-1.4-1.install} | 0
...-ml_optimiser_mpi.cpp-length_fn_ctf-patch.patch | 25 +
.../0002-Fix-autopicking-buffer-overflow.patch | 22 -
debian/patches/series | 2 +-
scripts/qsub.csh | 5 +-
src/apps/autopick_mpi.cpp | 5 +-
src/apps/find_tiltpairs.cpp | 74 +-
src/apps/image_handler.cpp | 605 ++-
src/apps/maingui.cpp | 13 +-
src/apps/mask_create.cpp | 4 +-
src/apps/particle_polish_mpi.cpp | 5 +-
src/apps/particle_sort_mpi.cpp | 5 +-
src/apps/preprocess_mpi.cpp | 2 +-
src/apps/project.cpp | 131 +-
src/apps/reconstruct.cpp | 122 +-
src/apps/refine_mpi.cpp | 7 +-
src/apps/run_ctffind_mpi.cpp | 5 +-
src/apps/stack_create.cpp | 14 +-
src/apps/star_compare.cpp | 109 +
src/apps/tiltpair_plot.cpp | 329 ++
src/assembly.cpp | 6 +-
src/assembly.h | 12 +-
src/autopicker.cpp | 104 +-
src/autopicker.h | 32 +-
src/backprojector.cpp | 375 +-
src/backprojector.h | 100 +-
src/complex.cpp | 34 +-
src/complex.h | 33 +-
src/ctf.cpp | 28 +-
src/ctf.h | 78 +-
src/ctffind_runner.cpp | 50 +-
src/ctffind_runner.h | 36 +-
src/ctffind_runner_mpi.cpp | 4 +-
src/displayer.cpp | 113 +-
src/displayer.h | 56 +-
src/euler.cpp | 101 +-
src/euler.h | 106 +-
src/exp_model.cpp | 852 ++-
src/exp_model.h | 115 +-
src/fftw.cpp | 424 +-
src/fftw.h | 106 +-
src/filename.cpp | 29 +-
src/funcs.cpp | 273 +-
src/funcs.h | 129 +-
src/gcc_version.h | 1 -
src/gui_entries.h | 8 +-
src/gui_jobwindow.cpp | 165 +-
src/gui_jobwindow.h | 39 +-
src/gui_mainwindow.cpp | 39 +-
src/healpix_sampling.cpp | 928 ++--
src/healpix_sampling.h | 139 +-
src/image.cpp | 89 +-
src/image.h | 42 +-
src/macros.h | 71 +-
src/manualpicker.cpp | 29 +-
src/mask.cpp | 42 +-
src/mask.h | 10 +-
src/matrix1d.cpp | 16 +-
src/matrix1d.h | 105 +-
src/matrix2d.cpp | 4 +-
src/matrix2d.h | 168 +-
src/metadata_container.cpp | 120 +-
src/metadata_container.h | 27 +-
src/metadata_label.cpp | 2 +-
src/metadata_label.h | 10 +-
src/metadata_table.cpp | 263 +-
src/metadata_table.h | 22 +-
src/ml_model.cpp | 136 +-
src/ml_model.h | 77 +-
src/ml_optimiser.cpp | 5730 ++++++++++----------
src/ml_optimiser.h | 235 +-
src/ml_optimiser_mpi.cpp | 362 +-
src/ml_optimiser_mpi.h | 5 +-
src/mpi.cpp | 216 +-
src/mpi.h | 10 +-
src/multidim_array.h | 241 +-
src/numerical_recipes.cpp | 265 +-
src/numerical_recipes.h | 53 +-
src/parallel.cpp | 1 +
src/particle_polisher.cpp | 389 +-
src/particle_polisher.h | 41 +-
src/particle_polisher_mpi.cpp | 42 +-
src/particle_sorter.cpp | 96 +-
src/particle_sorter.h | 18 +-
src/particle_sorter_mpi.cpp | 4 +-
src/postprocessing.cpp | 96 +-
src/postprocessing.h | 26 +-
src/preprocessing.cpp | 77 +-
src/preprocessing.h | 13 +-
src/projector.cpp | 220 +-
src/projector.h | 52 +-
src/rwIMAGIC.h | 22 +-
src/rwMRC.h | 42 +-
src/rwSPIDER.h | 22 +-
src/strings.cpp | 10 +-
src/strings.h | 9 +-
src/symmetries.cpp | 38 +-
src/symmetries.h | 12 +-
src/tabfuncs.cpp | 30 +-
src/tabfuncs.h | 24 +-
src/transformations.cpp | 29 +-
src/transformations.h | 98 +-
124 files changed, 9108 insertions(+), 7223 deletions(-)
delete mode 100644 debian/librelion+gui-1.3-1v5.lintian-overrides
rename debian/{librelion+gui-1.3-1v5.install => librelion+gui-1.4-1.install} (100%)
create mode 100644 debian/librelion+gui-1.4-1.lintian-overrides
delete mode 100644 debian/librelion+mpi+gui-1.3-1v5.lintian-overrides
rename debian/{librelion+mpi+gui-1.3-1v5.install => librelion+mpi+gui-1.4-1.install} (100%)
create mode 100644 debian/librelion+mpi+gui-1.4-1.lintian-overrides
delete mode 100644 debian/librelion+mpi-1.3-1v5.lintian-overrides
rename debian/{librelion+mpi-1.3-1v5.install => librelion+mpi-1.4-1.install} (100%)
create mode 100644 debian/librelion+mpi-1.4-1.lintian-overrides
delete mode 100644 debian/librelion-1.3-1v5.lintian-overrides
rename debian/{librelion-1.3-1v5.install => librelion-1.4-1.install} (100%)
create mode 100644 debian/patches/0002-Add-ml_optimiser_mpi.cpp-length_fn_ctf-patch.patch
delete mode 100644 debian/patches/0002-Fix-autopicking-buffer-overflow.patch
create mode 100644 src/apps/star_compare.cpp
create mode 100644 src/apps/tiltpair_plot.cpp
--
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