[med-svn] r20741 - in trunk/packages/rnahybrid/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2015-12-11 14:01:37 +0000 (Fri, 11 Dec 2015)
New Revision: 20741

Added:
   trunk/packages/rnahybrid/trunk/debian/README.test
   trunk/packages/rnahybrid/trunk/debian/tests/
   trunk/packages/rnahybrid/trunk/debian/tests/control
   trunk/packages/rnahybrid/trunk/debian/tests/run-unit-test
Modified:
   trunk/packages/rnahybrid/trunk/debian/changelog
   trunk/packages/rnahybrid/trunk/debian/docs
Log:
Add unittests and upload to unstable


Added: trunk/packages/rnahybrid/trunk/debian/README.test
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/rnahybrid/trunk/debian/README.test	2015-12-11 14:01:37 UTC (rev 20741)
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+   sh run-unit-test
+
+in this directory.

Modified: trunk/packages/rnahybrid/trunk/debian/changelog
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/changelog	2015-12-11 13:48:53 UTC (rev 20740)
+++ trunk/packages/rnahybrid/trunk/debian/changelog	2015-12-11 14:01:37 UTC (rev 20741)
@@ -1,4 +1,4 @@
-rnahybrid (2.1.2-1) UNRELEASED; urgency=medium
+rnahybrid (2.1.2-1) unstable; urgency=medium
 
   * New upstream version
   * cme fix dpkg-control
@@ -8,8 +8,9 @@
   * Propagate hardening options
   * Fix manpage syntax
   * Add examples and docs
+  * add autopkgtest
 
- -- Andreas Tille <tille at debian.org>  Fri, 11 Dec 2015 13:36:53 +0100
+ -- Andreas Tille <tille at debian.org>  Fri, 11 Dec 2015 14:54:18 +0100
 
 rnahybrid (2.1.1-2) unstable; urgency=low
 

Modified: trunk/packages/rnahybrid/trunk/debian/docs
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/docs	2015-12-11 13:48:53 UTC (rev 20740)
+++ trunk/packages/rnahybrid/trunk/debian/docs	2015-12-11 14:01:37 UTC (rev 20741)
@@ -1,2 +1,4 @@
 README
 AUTHORS
+debian/README.test
+debian/tests/run-unit-test

Added: trunk/packages/rnahybrid/trunk/debian/tests/control
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/rnahybrid/trunk/debian/tests/control	2015-12-11 14:01:37 UTC (rev 20741)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr

Added: trunk/packages/rnahybrid/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/rnahybrid/trunk/debian/tests/run-unit-test	2015-12-11 14:01:37 UTC (rev 20741)
@@ -0,0 +1,17 @@
+#!/bin/sh -e
+
+pkg=rnahybrid
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/rnahybrid/examples $ADTTMP
+find examples -name "*.gz" -exec gunzip \{\} \;
+
+RNAhybrid -s 3utr_worm -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta
+RNAcalibrate -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta
+RNAhybrid -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta
+RNAhybrid -f 2,7 -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta
+RNAcalibrate -f 2,7 -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta
+RNAhybrid -s 3utr_worm -t examples/cbr-hbl-1.fasta -q examples/cel-let-7.fasta
+RNAeffective -k 30 -s -t examples/hbl-1.fasta -q examples/cel-let-7.fasta