[med-svn] [snpomatic] 02/15: add debian dir

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository snpomatic.

commit dc7c4d927bafee104de56cb673a8576118f28999
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sat Dec 12 20:26:37 2015 +0000

    add debian dir
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 25 +++++++++++++++++++++++++
 debian/copyright     | 28 ++++++++++++++++++++++++++++
 debian/rules         |  9 +++++++++
 debian/source/format |  1 +
 6 files changed, 69 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..0848f56
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+snpomatic (0.0.20151015-1) unstable; urgency=medium
+
+  * Initial release. (Closes: #XXXXXX)
+
+ -- Sascha Steinbiss <sascha at steinbiss.name>  Sat, 12 Dec 2015 20:17:45 +0000
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..5da0837
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,25 @@
+Source: snpomatic
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Sascha Steinbiss <sascha at steinbiss.name>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               help2man
+Standards-Version: 3.9.6
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/fastaq.git
+Vcs-Git: git://anonscm.debian.org/debian-med/snpomatic.git
+Homepage: https://github.com/magnusmanske/snpomatic
+
+Package: snpomatic
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: fast, stringent short-read mapping software
+ High throughput sequencing technologies generate large amounts of short reads.
+ Mapping these to a reference sequence consumes large amounts of processing
+ time and memory, and read mapping errors can lead to noisy or incorrect
+ alignments.
+ .
+ SNP-o-matic is a fast, stringent short-read mapping software. It supports a
+ multitude of output types and formats, for uses in filtering reads, alignments,
+ sequence-based genotyping calls, assisted reassembly of contigs etc.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..e38d9f3
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,28 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: snpomatic
+Source: https://github.com/magnusmanske/snpomatic
+
+Files: *
+Copyright: © 2009-2015 Magnus Manske <mm6 at sanger.ac.uk>
+License: GPL-3+
+
+Files: debian/*
+Copyright: © 2015 Sascha Steinbiss <sascha at steinbiss.name>
+License: GPL-3+
+
+License: GPL-3+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..18d6d31
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,9 @@
+#!/usr/bin/make -f
+
+export DH_VERBOSE := 1
+
+mandir := $(CURDIR)/debian/man
+debfolder := $(CURDIR)/debian
+
+%:
+	dh $@
\ No newline at end of file
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..46ebe02
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
\ No newline at end of file

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