[med-svn] [libtabixpp] 01/02: add tests, finish building as a shlib
Sascha Steinbiss
sascha-guest at moszumanska.debian.org
Sun Dec 13 03:17:47 UTC 2015
This is an automated email from the git hooks/post-receive script.
sascha-guest pushed a commit to branch master
in repository libtabixpp.
commit d674d23b996eb07c8bda2b8b6125366ed08b2d7e
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date: Sun Dec 13 03:13:27 2015 +0000
add tests, finish building as a shlib
---
debian/control | 21 +-
...{libtabixpp-dev.links => libtabixpp0-dev.links} | 0
debian/libtabixpp0.postinst | 37 ++
debian/libtabixpp0.postrm | 38 ++
debian/patches/build_with_debian_htslib.patch | 2 +-
debian/rules | 6 +-
debian/tests/Lmajor.gff3.1 | 463 +++++++++++++++++++++
debian/tests/build-lib | 22 +
debian/tests/control | 2 +
debian/tests/eden.gff3 | 25 ++
10 files changed, 611 insertions(+), 5 deletions(-)
diff --git a/debian/control b/debian/control
index 4a7d1b7..17a9321 100644
--- a/debian/control
+++ b/debian/control
@@ -8,7 +8,8 @@ Build-Depends: debhelper (>= 9),
libhts-dev,
libhts1,
zlib1g,
- zlib1g-dev
+ zlib1g-dev,
+ d-shlibs
Standards-Version: 3.9.6
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libtabixpp.git
Vcs-Git: git://anonscm.debian.org/debian-med/libtabixpp.git
@@ -29,7 +30,9 @@ Description: C++ wrapper to tabix indexer
.
This package provides a C++ wrapper to the tabix indexer.
-Package: libtabixpp-dev
+Package: libtabixpp0-dev
+Provides: libtabixpp-dev
+Conflicts: libtabixpp-dev
Architecture: any
Section: libdevel
Depends: ${shlibs:Depends},
@@ -38,4 +41,16 @@ Depends: ${shlibs:Depends},
Description: C++ wrapper to tabix indexer (development files)
This package provides development headers and static libraries for libtabixpp,
a C++ interface wrapper for Tabix. Tabix is a part of htslib to index tabular
- files in which some columns indicate sequence coordinates.
\ No newline at end of file
+ files in which some columns indicate sequence coordinates.
+
+Package: libtabixpp0-dbg
+Architecture: any
+Section: debug
+Priority: extra
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ libtabixpp0 (= ${binary:Version})
+Description: C++ wrapper to tabix indexer (debug symbols)
+ This package provides debug symbols for libtabixpp,
+ a C++ interface wrapper for Tabix. Tabix is a part of htslib to index tabular
+ files in which some columns indicate sequence coordinates.
diff --git a/debian/libtabixpp-dev.links b/debian/libtabixpp0-dev.links
similarity index 100%
rename from debian/libtabixpp-dev.links
rename to debian/libtabixpp0-dev.links
diff --git a/debian/libtabixpp0.postinst b/debian/libtabixpp0.postinst
new file mode 100644
index 0000000..95d829f
--- /dev/null
+++ b/debian/libtabixpp0.postinst
@@ -0,0 +1,37 @@
+#!/bin/sh
+# postinst script for #PACKAGE#
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <postinst> `configure' <most-recently-configured-version>
+# * <old-postinst> `abort-upgrade' <new version>
+# * <conflictor's-postinst> `abort-remove' `in-favour' <package>
+# <new-version>
+# * <postinst> `abort-remove'
+# * <deconfigured's-postinst> `abort-deconfigure' `in-favour'
+# <failed-install-package> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ configure)
+ ldconfig
+ ;;
+
+ abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/libtabixpp0.postrm b/debian/libtabixpp0.postrm
new file mode 100644
index 0000000..f47d01f
--- /dev/null
+++ b/debian/libtabixpp0.postrm
@@ -0,0 +1,38 @@
+#!/bin/sh
+# postrm script for #PACKAGE#
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <postrm> `remove'
+# * <postrm> `purge'
+# * <old-postrm> `upgrade' <new-version>
+# * <new-postrm> `failed-upgrade' <old-version>
+# * <new-postrm> `abort-install'
+# * <new-postrm> `abort-install' <old-version>
+# * <new-postrm> `abort-upgrade' <old-version>
+# * <disappearer's-postrm> `disappear' <overwriter>
+# <overwriter-version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ purge|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)
+ ;;
+
+ remove)
+ ldconfig
+ ;;
+
+ *)
+ echo "postrm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/patches/build_with_debian_htslib.patch b/debian/patches/build_with_debian_htslib.patch
index 9bcba7e..d790a9c 100644
--- a/debian/patches/build_with_debian_htslib.patch
+++ b/debian/patches/build_with_debian_htslib.patch
@@ -40,7 +40,7 @@ Description: Build_with_debian_htslib
-htslib/libhts.a:
- cd htslib && $(MAKE) lib-static
+libtabixpp.so.$(SONUMBER): tabix.o
-+ $(CC) $(LDFLAGS) $(CXXFLAGS) -Wl,-soname,libtabixpp.so.$(SONUMBER) -shared -o $@ $<
++ $(CXX) -shared -o $@ $< -fPIC -Wl,-soname,libtabixpp.so.$(SONUMBER) $(LDFLAGS) -lhts
-tabix++: tabix.o main.cpp $(HTS_LIB)
+tabix++: tabix.o main.cpp
diff --git a/debian/rules b/debian/rules
index 54b17b5..f38bfc1 100755
--- a/debian/rules
+++ b/debian/rules
@@ -10,4 +10,8 @@ override_dh_auto_install:
cp *hpp debian/libtabixpp-dev/usr/include
mkdir -p debian/libtabixpp0/usr/lib
cp libtabixpp.so* debian/libtabixpp0/usr/lib/
- dh_auto_install --
\ No newline at end of file
+ dh_auto_install --
+
+override_dh_strip:
+ dh_strip --dbg-package=libtabixpp0-dbg
+
diff --git a/debian/tests/Lmajor.gff3.1 b/debian/tests/Lmajor.gff3.1
new file mode 100644
index 0000000..190c1f6
--- /dev/null
+++ b/debian/tests/Lmajor.gff3.1
@@ -0,0 +1,463 @@
+##gff-version 3
+##sequence-region LmjF.01 1 268988
+#created 2014/11/06 09:43:20
+#created 2014/11/06 09:43:52
+#created 2014/11/06 09:44:09
+#created 2014/11/06 09:44:25
+#created 2014/11/06 09:44:46
+#created 2014/11/06 09:45:05
+#created 2014/11/06 09:45:29
+#created 2014/11/06 09:45:55
+#created 2014/11/06 09:46:13
+#created 2014/11/06 09:46:46
+#created 2014/11/06 09:47:13
+#created 2014/11/06 09:47:56
+#created 2014/11/06 09:48:14
+#created 2014/11/06 09:48:44
+#created 2014/11/06 09:49:10
+#created 2014/11/06 09:49:37
+#created 2014/11/06 09:50:10
+#created 2014/11/06 09:50:40
+#created 2014/11/06 09:51:09
+#created 2014/11/06 09:51:52
+#created 2014/11/06 09:52:21
+#created 2014/11/06 09:53:15
+#created 2014/11/06 09:53:44
+#created 2014/11/06 09:54:09
+#created 2014/11/06 09:54:45
+#created 2014/11/06 09:55:26
+#created 2014/11/06 09:56:52
+#created 2014/11/06 09:57:36
+#created 2014/11/06 09:58:23
+#created 2014/11/06 09:59:08
+#created 2014/11/06 10:00:19
+#created 2014/11/06 10:01:28
+#created 2014/11/06 10:02:34
+#created 2014/11/06 10:03:34
+#created 2014/11/06 10:05:03
+#created 2014/11/06 10:06:49
+LmjF.01 chado gene 3704 4702 . - . ID=gene1;previous_systematic_id=LmjF01.0010
+LmjF.01 chado mRNA 3704 4702 . - . ID=mRNA1;Parent=gene1;previous_systematic_id=LmjF1.0010,LmjF01.0010:mRNA
+LmjF.01 chado CDS 3704 4702 . - 0 Parent=mRNA1;previous_systematic_id=LmjF01.0010:exon:1
+###
+LmjF.01 chado polypeptide 3704 4702 . - . Derives_from=LmjF.01.0010:mRNA;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 1-4%3B,%3Bquery 268-332%3B;membrane_structure=tmhmm%3B%3Bquery 1-332%3B;non_cytoplasmic_polypeptide_region=%3Bquery 28-244%3B;orthologous_to=Linfantum:LinJ.01.0010 link%3DLinJ.01.0010:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C unknown function%3Bmatch_name%3DLinJ.01.0010:pep%3B rank%3D0,Linfantum:LinJ.01.0010 [...]
+LmjF.01 chado gene 5790 7439 . - . ID=gene2;previous_systematic_id=LmjF01.0020
+LmjF.01 chado mRNA 5790 7439 . - . ID=mRNA2;Parent=gene2;previous_systematic_id=LmjF1.0020,LmjF01.0020:mRNA
+LmjF.01 chado CDS 5790 7439 . - 0 Parent=mRNA2;previous_systematic_id=LmjF01.0020:exon:1
+###
+LmjF.01 chado polypeptide 5790 7439 . - . Derives_from=LmjF.01.0020:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0020 link%3DLinJ.01.0020:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0020:pep%3B rank%3D0,Tvivax:TvY486_0901220 link%3DTvY486_0901220:pep type%3Dorthologous_to%2C Linfantum:LinJ.01.0020 link%3DLinJ.01.0020:pep type%3Dorthologous_to%2C Tbruceigambiense:Tbg972.9.1900 link%3DTbg972.9.190 [...]
+LmjF.01 chado gene 9061 11067 . - . ID=gene3;previous_systematic_id=LmjF01.0030
+LmjF.01 chado mRNA 9061 11067 . - . ID=mRNA3;Parent=gene3;previous_systematic_id=LmjF1.0030,LmjF01.0030:mRNA
+LmjF.01 chado CDS 9061 11067 . - 0 Parent=mRNA3;previous_systematic_id=LmjF01.0030:exon:1
+###
+LmjF.01 chado polypeptide 9061 11067 . - . Derives_from=LmjF.01.0030:mRNA;Ontology_term=GO:0007018,GO:0003777,GO:0005524;comment=constituitively expressed (PMID:17188763);literature=PMID:21124853,PMID:20808899,PMID:21363968;orthologous_to=Linfantum:LinJ.01.0030 link%3DLinJ.01.0030:pep type%3Dorthologous_to%3Bproduct%3DMCAK-like kinesin%2C putative%3Bmatch_name%3DLinJ.01.0030:pep%3B rank%3D0,Lmexicana:LmxM.01.0030 link%3DLmxM.01.0030.1:pep type%3Dorthologous_to%2C Tcruzi:TcCLB.508501.290 [...]
+LmjF.01 chado gene 12073 12642 . - . ID=gene4;previous_systematic_id=LmjF01.0040
+LmjF.01 chado mRNA 12073 12642 . - . ID=mRNA4;Parent=gene4;previous_systematic_id=LmjF1.0040,LmjF01.0040:mRNA
+LmjF.01 chado CDS 12073 12642 . - 0 Parent=mRNA4;previous_systematic_id=LmjF01.0040:exon:1
+###
+LmjF.01 chado polypeptide 12073 12642 . - . Derives_from=LmjF.01.0040:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0040 link%3DLinJ.01.0040:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C unknown function%3Bmatch_name%3DLinJ.01.0040:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0070 link%3DLbrM.01.0070:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C unknown function%3Bmatch_name%3DLbrM.01.0070:pep%3B rank%3D0,Lbraziliensis:Lb [...]
+LmjF.01 chado gene 15025 17022 . - . ID=gene5;previous_systematic_id=LmjF01.0050
+LmjF.01 chado mRNA 15025 17022 . - . ID=mRNA5;Parent=gene5;previous_systematic_id=LmjF1.0050,LmjF01.0050:mRNA
+LmjF.01 chado CDS 15025 17022 . - 0 Parent=mRNA5;previous_systematic_id=LmjF01.0050:exon:1
+###
+LmjF.01 chado polypeptide 15025 17022 . - . Dbxref=EC:6.4.-.-;Derives_from=LmjF.01.0050:mRNA;Ontology_term=GO:0008152,GO:0009374,GO:0005524,GO:0016874;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0050 link%3DLinJ.01.0050:pep type%3Dorthologous_to%3Bproduct%3Dcarboxylase%2C putative%3Bmatch_name%3DLinJ.01.0050:pep%3B rank%3D0,Lmexicana:LmxM.01.0050 link%3DLmxM.01.0050.1:pep type%3Dorthologous_to%2C Lbraziliensis:LbrM.01.0080 link%3DLbrM.01.0080:pep ty [...]
+LmjF.01 chado gene 18137 18886 . - . ID=gene6;previous_systematic_id=LmjF01.0060
+LmjF.01 chado mRNA 18137 18886 . - . ID=mRNA6;Parent=gene6;previous_systematic_id=LmjF1.0060,LmjF01.0060:mRNA
+LmjF.01 chado CDS 18137 18886 . - 0 Parent=mRNA6;previous_systematic_id=LmjF01.0060:exon:1
+###
+LmjF.01 chado polypeptide 18137 18886 . - . Derives_from=LmjF.01.0060:mRNA;gPI_anchor_cleavage_site=%3Bquery 215-215%3BGPI_cleavage_site_score%3D1.5480001;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.506895.30 link%3DTcCLB.506895.30:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.506895.30:pep%3B rank%3D0,Tcongolense:TcIL3000_9_1130 link%3DTcIL3000_9_1130.1:pep type%3Dorthologous_to%2C Tcruzi:TcCLB.506895.30 li [...]
+LmjF.01 chado gene 19951 21747 . - . ID=gene7;previous_systematic_id=LmjF01.0070
+LmjF.01 chado mRNA 19951 21747 . - . ID=mRNA7;Parent=gene7;previous_systematic_id=LmjF1.0070,LmjF01.0070:mRNA
+LmjF.01 chado CDS 19951 21747 . - 0 Parent=mRNA7;previous_systematic_id=LmjF01.0070:exon:1
+###
+LmjF.01 chado polypeptide 19951 21747 . - . Derives_from=LmjF.01.0070:mRNA;gPI_anchor_cleavage_site=%3Bquery 581-581%3BGPI_cleavage_site_score%3D0.344;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.01.0100 link%3DLbrM.01.0100:pep type%3Dorthologous_to%2C Tvivax:TvY486_0901190 link%3DTvY486_0901190:pep type%3Dorthologous_to%2C Tcruzi:TcCLB.506895.20 link%3DTcCLB.506895.20:pep type%3Dorthologous_to%2C Tbruceigambiense:Tbg972.9.1870 link%3DTbg972.9.1870: [...]
+LmjF.01 chado gene 22613 23326 . - . ID=gene8;previous_systematic_id=LmjF01.0080
+LmjF.01 chado mRNA 22613 23326 . - . ID=mRNA8;Parent=gene8;previous_systematic_id=LmjF1.0080,LmjF01.0080:mRNA
+LmjF.01 chado CDS 22613 23326 . - 0 Parent=mRNA8;previous_systematic_id=LmjF01.0080:exon:1
+###
+LmjF.01 chado polypeptide 22613 23326 . - . Derives_from=LmjF.01.0080:mRNA;gPI_anchor_cleavage_site=%3Bquery 217-217%3BGPI_cleavage_site_score%3D0.12900001;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0080 link%3DLinJ.01.0080:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0080:pep%3B rank%3D0,Tcruzi:TcCLB.506895.10 link%3DTcCLB.506895.10:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C cons [...]
+LmjF.01 chado gene 24859 25683 . - . ID=gene9;previous_systematic_id=LmjF01.0090
+LmjF.01 chado mRNA 24859 25683 . - . ID=mRNA9;Parent=gene9;previous_systematic_id=LmjF1.0090,LmjF01.0090:mRNA
+LmjF.01 chado CDS 24859 25683 . - 0 Parent=mRNA9;previous_systematic_id=LmjF01.0090:exon:1
+###
+LmjF.01 chado polypeptide 24859 25683 . - . Derives_from=LmjF.01.0090:mRNA;gPI_anchor_cleavage_site=%3Bquery 259-259%3BGPI_cleavage_site_score%3D0.21600002;Ontology_term=GO:0005524;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0090 link%3DLinJ.01.0090:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0090:pep%3B rank%3D0,Tcruzi:TcCLB.506893.100 link%3DTcCLB.506893.100:pep type%3Dorthologous_to%3Bproduct%3Dh [...]
+LmjF.01 chado gene 26405 27361 . - . ID=gene10;previous_systematic_id=LmjF01.0100
+LmjF.01 chado mRNA 26405 27361 . - . ID=mRNA10;Parent=gene10;previous_systematic_id=LmjF1.0100,LmjF01.0100:mRNA
+LmjF.01 chado CDS 26405 27361 . - 0 Parent=mRNA10;previous_systematic_id=LmjF01.0100:exon:1
+###
+LmjF.01 chado polypeptide 26405 27361 . - . Derives_from=LmjF.01.0100:mRNA;Ontology_term=GO:0005975,GO:0008107,GO:0005794,GO:0016020;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.506893.90 link%3DTcCLB.506893.90:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.506893.90:pep%3B rank%3D0,Tcruzi:TcCLB.506893.90 link%3DTcCLB.506893.90:pep type%3Dorthologous_to%2C Tbruceibrucei927:Tb927.9.3600 link%3DTb927.9.3600:pep [...]
+LmjF.01 chado gene 28521 29108 . - . ID=gene11;previous_systematic_id=LmjF01.0110
+LmjF.01 chado mRNA 28521 29108 . - . ID=mRNA11;Parent=gene11;previous_systematic_id=LmjF1.0110,LmjF01.0110:mRNA
+LmjF.01 chado CDS 28521 29108 . - 0 Parent=mRNA11;previous_systematic_id=LmjF01.0110:exon:1
+###
+LmjF.01 chado polypeptide 28521 29108 . - . Dbxref=UniProt:E9AC00;Derives_from=LmjF.01.0110:mRNA;Ontology_term=GO:0005739,GO:0004362,GO:0055114,GO:0045454,GO:0044429,GO:0015035,GO:0009055;comment=constituitively expressed (PMID:17188763);literature=PMID:20660476,PMID:18095866,PMID:18669638,PMID:16302277;orthologous_to=Tbruceibrucei927:Tb927.9.3590 link%3DTb927.9.3590:pep type%3Dorthologous_to%3Bproduct%3Dmonothiol glutaredoxin%2C putative%3Bmatch_name%3DTb927.9.3590:pep%3B rank%3D0,Lbraz [...]
+LmjF.01 chado gene 30278 32251 . - . ID=gene12;previous_systematic_id=LmjF01.0120
+LmjF.01 chado mRNA 30278 32251 . - . ID=mRNA12;Parent=gene12;previous_systematic_id=LmjF1.0120,LmjF01.0120:mRNA
+LmjF.01 chado CDS 30278 32251 . - 0 Parent=mRNA12;previous_systematic_id=LmjF01.0120:exon:1
+###
+LmjF.01 chado polypeptide 30278 32251 . - . Derives_from=LmjF.01.0120:mRNA;gPI_anchor_cleavage_site=%3Bquery 408-408%3BGPI_cleavage_site_score%3D1.5480001;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0120 link%3DLinJ.01.0120:pep type%3Dorthologous_to%2C Tcongolense:TcIL3000_9_1070 link%3DTcIL3000_9_1070.1:pep type%3Dorthologous_to%2C Lbraziliensis:LbrM.01.0150 link%3DLbrM.01.0150:pep type%3Dorthologous_to%2C Tbruceigambiense:Tbg972.9.1830 link%3DTbg9 [...]
+LmjF.01 chado gene 33630 34724 . - . ID=gene13;previous_systematic_id=LmjF01.0130
+LmjF.01 chado mRNA 33630 34724 . - . ID=mRNA13;Parent=gene13;previous_systematic_id=LmjF1.0130,LmjF01.0130:mRNA
+LmjF.01 chado CDS 33630 34724 . - 0 Parent=mRNA13;previous_systematic_id=LmjF01.0130:exon:1
+###
+LmjF.01 chado polypeptide 33630 34724 . - . Derives_from=LmjF.01.0130:mRNA;gPI_anchor_cleavage_site=%3Bquery 347-347%3BGPI_cleavage_site_score%3D3.7410002;comment=constituitively expressed (PMID:17188763);orthologous_to=Lmexicana:LmxM.01.0130 link%3DLmxM.01.0130.1:pep type%3Dorthologous_to%2C Tcongolense:TcIL3000_0_53500 link%3DTcIL3000_0_53500.1:pep type%3Dorthologous_to%2C Tcongolense:TcIL3000_9_1060 link%3DTcIL3000_9_1060.1:pep type%3Dorthologous_to%2C Tvivax:TvY486_0901140 link%3DTvY [...]
+LmjF.01 chado gene 36878 37126 . - . ID=gene14;previous_systematic_id=LmjF01.0140
+LmjF.01 chado mRNA 36878 37126 . - . ID=mRNA14;Parent=gene14;previous_systematic_id=LmjF1.0140,LmjF01.0140:mRNA
+LmjF.01 chado CDS 36878 37126 . - 0 Parent=mRNA14;previous_systematic_id=LmjF01.0140:exon:1
+###
+LmjF.01 chado polypeptide 36878 37126 . - . Derives_from=LmjF.01.0140:mRNA;comment=This gene probably uses an internal ATG%2C based on sequence alignment with other Leishmania species. Pers. Comm. Peter Myler%2C peter.myler at sbri.org%3B 1/31/11 constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.506893.50 link%3DTcCLB.506893.50:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.506893.50:pep%3B rank%3D0,Tcruzi:TcCLB.508501.200 li [...]
+LmjF.01 chado gene 37714 38064 . - . ID=gene15;previous_systematic_id=LmjF01.0150
+LmjF.01 chado mRNA 37714 38064 . - . ID=mRNA15;Parent=gene15;previous_systematic_id=LmjF1.0150,LmjF01.0150:mRNA
+LmjF.01 chado CDS 37714 38064 . - 0 Parent=mRNA15;previous_systematic_id=LmjF01.0150:exon:1
+###
+LmjF.01 chado polypeptide 37714 38064 . - . Derives_from=LmjF.01.0150:mRNA;gPI_anchor_cleavage_site=%3Bquery 95-95%3BGPI_cleavage_site_score%3D0.51600003;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 43-116%3B;membrane_structure=tmhmm%3B%3Bquery 1-116%3B;non_cytoplasmic_polypeptide_region=%3Bquery 1-19%3B;orthologous_to=Lbraziliensis:LbrM.01.0180 link%3DLbrM.01.0180:pep type%3Dorthologous_to%2C Tcruzi:TcCLB.508501.190 link%3DTcCLB.508501.190:pe [...]
+LmjF.01 chado gene 38940 39182 . - . ID=gene16;previous_systematic_id=LmjF01.0160
+LmjF.01 chado mRNA 38940 39182 . - . ID=mRNA16;Parent=gene16;previous_systematic_id=LmjF1.0160,LmjF01.0160:mRNA
+LmjF.01 chado CDS 38940 39182 . - 0 Parent=mRNA16;previous_systematic_id=LmjF01.0160:exon:1
+###
+LmjF.01 chado polypeptide 38940 39182 . - . Derives_from=LmjF.01.0160:mRNA;gPI_anchor_cleavage_site=%3Bquery 44-44%3BGPI_cleavage_site_score%3D0.25800002;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0160 link%3DLinJ.01.0160:pep type%3Dorthologous_to%2C Lmexicana:LmxM.01.0160 link%3DLmxM.01.0160.1:pep type%3Dorthologous_to%2C Lbraziliensis:LbrM.01.0190 link%3DLbrM.01.0190:pep type%3Dorthologous_to%3B cluster_name%3DTrypanosome:ORTHOMCL7630%3B program% [...]
+LmjF.01 chado gene 41273 42649 . - . ID=gene17;previous_systematic_id=LmjF01.0170
+LmjF.01 chado mRNA 41273 42649 . - . ID=mRNA17;Parent=gene17;previous_systematic_id=LmjF1.0170,LmjF01.0170:mRNA
+LmjF.01 chado CDS 41273 42649 . - 0 Parent=mRNA17;previous_systematic_id=LmjF01.0170:exon:1
+###
+LmjF.01 chado polypeptide 41273 42649 . - . Derives_from=LmjF.01.0170:mRNA;gPI_anchor_cleavage_site=%3Bquery 420-420%3BGPI_cleavage_site_score%3D0.12900001;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.3490 link%3DTb927.9.3490:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTb927.9.3490:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0200 link%3DLbrM.01.0200:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein [...]
+LmjF.01 chado gene 44148 46466 . - . ID=gene18;previous_systematic_id=LmjF01.0180
+LmjF.01 chado mRNA 44148 46466 . - . ID=mRNA18;Parent=gene18;previous_systematic_id=LmjF1.0180,LmjF01.0180:mRNA
+LmjF.01 chado CDS 44148 46466 . - 0 Parent=mRNA18;previous_systematic_id=LmjF01.0180:exon:1
+###
+LmjF.01 chado polypeptide 44148 46466 . - . Derives_from=LmjF.01.0180:mRNA;Ontology_term=GO:0005247,GO:0016020,GO:0006821;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 110-154%3B,%3Bquery 229-234%3B,%3Bquery 286-291%3B,%3Bquery 362-373%3B,%3Bquery 466-493%3B;membrane_structure=tmhmm%3B%3Bquery 1-772%3B;non_cytoplasmic_polypeptide_region=%3Bquery 1-86%3B,%3Bquery 178-205%3B,%3Bquery 254-262%3B,%3Bquery 312-338%3B,%3Bquery 397-442%3B,%3Bquery 517 [...]
+LmjF.01 chado gene 47548 48138 . - . ID=gene19;previous_systematic_id=LmjF01.0190
+LmjF.01 chado mRNA 47548 48138 . - . ID=mRNA19;Parent=gene19;previous_systematic_id=LmjF1.0190,LmjF01.0190:mRNA
+LmjF.01 chado CDS 47548 48138 . - 0 Parent=mRNA19;previous_systematic_id=LmjF01.0190:exon:1
+###
+LmjF.01 chado polypeptide 47548 48138 . - . Derives_from=LmjF.01.0190:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.3480 link%3DTb927.9.3480:pep type%3Dorthologous_to%3Bproduct%3DU5Cwc21 small nuclear ribonucleoprotein%3Bmatch_name%3DTb927.9.3480:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0220 link%3DLbrM.01.0220:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLbrM.01.0220:pep%3B rank%3D0,Tvivax:TvY486_090 [...]
+LmjF.01 chado gene 48851 49753 . - . ID=gene20;previous_systematic_id=LmjF01.0200
+LmjF.01 chado mRNA 48851 49753 . - . ID=mRNA20;Parent=gene20;previous_systematic_id=LmjF1.0200,LmjF01.0200:mRNA
+LmjF.01 chado CDS 48851 49753 . - 0 Parent=mRNA20;previous_systematic_id=LmjF01.0200:exon:1
+###
+LmjF.01 chado polypeptide 48851 49753 . - . Derives_from=LmjF.01.0200:mRNA;gPI_anchor_cleavage_site=%3Bquery 265-265%3BGPI_cleavage_site_score%3D0.20879999;Ontology_term=GO:0004725,GO:0006470;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.3470 link%3DTb927.9.3470:pep type%3Dorthologous_to%3Bproduct%3Dlow molecular weight protein tyrosine phosphatase%2C putative%3Bmatch_name%3DTb927.9.3470:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0230 link%3DLbrM.01 [...]
+LmjF.01 chado gene 50677 53370 . - . ID=gene21;previous_systematic_id=LmjF01.0210
+LmjF.01 chado mRNA 50677 53370 . - . ID=mRNA21;Parent=gene21;previous_systematic_id=LmjF1.0210,LmjF01.0210:mRNA
+LmjF.01 chado CDS 50677 53370 . - 0 Parent=mRNA21;previous_systematic_id=LmjF01.0210:exon:1
+###
+LmjF.01 chado polypeptide 50677 53370 . - . Derives_from=LmjF.01.0210:mRNA;Ontology_term=GO:0008270,GO:0003723;comment=Contains CCCH type zinc finger motif (PMID:20444260). MR 11/10/2010 constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.511577.30 link%3DTcCLB.511577.30:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.511577.30:pep%3B rank%3D0,Tcruzi:TcCLB.504797.110 link%3DTcCLB.504797.110:pep type%3Dorthologous_to%3Bproduct [...]
+LmjF.01 chado gene 57026 58033 . - . ID=gene22;Name=CYP12;previous_systematic_id=LmjF01.0220
+LmjF.01 chado mRNA 57026 58033 . - . ID=mRNA22;Parent=gene22;previous_systematic_id=LmjF1.0220,LmjF01.0220:mRNA
+LmjF.01 chado CDS 57026 58033 . - 0 Parent=mRNA22;previous_systematic_id=LmjF01.0220:exon:1
+###
+LmjF.01 chado polypeptide 57026 58033 . - . Dbxref=EC:5.2.1.8;Derives_from=LmjF.01.0220:mRNA;gPI_anchor_cleavage_site=%3Bquery 300-300%3BGPI_cleavage_site_score%3D0.26;Ontology_term=GO:0003755;comment=constituitively expressed (PMID:17188763);literature=PMID:20614016;orthologous_to=Tcruzi:TcCLB.511577.40 link%3DTcCLB.511577.40:pep type%3Dorthologous_to%3Bproduct%3D35 kDa cyclophilin%2C putative%3Bmatch_name%3DTcCLB.511577.40:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.3440 link%3DTb927.9.34 [...]
+LmjF.01 chado gene 58837 59253 . - . ID=gene23;previous_systematic_id=LmjF01.0230
+LmjF.01 chado mRNA 58837 59253 . - . ID=mRNA23;Parent=gene23;previous_systematic_id=LmjF1.0230,LmjF01.0230:mRNA
+LmjF.01 chado CDS 58837 59253 . - 0 Parent=mRNA23;previous_systematic_id=LmjF01.0230:exon:1
+###
+LmjF.01 chado polypeptide 58837 59253 . - . Derives_from=LmjF.01.0230:mRNA;gPI_anchor_cleavage_site=%3Bquery 112-112%3BGPI_cleavage_site_score%3D0.64599997;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.01.0270 link%3DLbrM.01.0270:pep type%3Dorthologous_to%2C Lmexicana:LmxM.01.0230 link%3DLmxM.01.0230.1:pep type%3Dorthologous_to%2C Linfantum:LinJ.01.0230 link%3DLinJ.01.0230:pep type%3Dorthologous_to%3B cluster_name%3DTrypanosome:ORTHOMCL7632%3B progra [...]
+LmjF.01 chado gene 60056 62833 . - . ID=gene24;previous_systematic_id=LmjF01.0240
+LmjF.01 chado mRNA 60056 62833 . - . ID=mRNA24;Parent=gene24;previous_systematic_id=LmjF1.0240,LmjF01.0240:mRNA
+LmjF.01 chado CDS 60056 62833 . - 0 Parent=mRNA24;previous_systematic_id=LmjF01.0240:exon:1
+###
+LmjF.01 chado polypeptide 60056 62833 . - . Derives_from=LmjF.01.0240:mRNA;gPI_anchor_cleavage_site=%3Bquery 895-895%3BGPI_cleavage_site_score%3D2.3220003;Ontology_term=GO:0003677,GO:0005524,GO:0004386;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.511577.60 link%3DTcCLB.511577.60:pep type%3Dorthologous_to%3Bproduct%3DDNA excision/repair protein SNF2%2C putative%3Bmatch_name%3DTcCLB.511577.60:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0280 link%3DLbrM.01.0280:pe [...]
+LmjF.01 chado gene 63619 65985 . - . ID=gene25;previous_systematic_id=LmjF01.0250
+LmjF.01 chado mRNA 63619 65985 . - . ID=mRNA25;Parent=gene25;previous_systematic_id=LmjF1.0250,LmjF01.0250:mRNA
+LmjF.01 chado CDS 63619 65985 . - 0 Parent=mRNA25;previous_systematic_id=LmjF01.0250:exon:1
+###
+LmjF.01 chado polypeptide 63619 65985 . - . Derives_from=LmjF.01.0250:mRNA;gPI_anchor_cleavage_site=%3Bquery 755-755%3BGPI_cleavage_site_score%3D0.2052;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.511577.70 link%3DTcCLB.511577.70:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.511577.70:pep%3B rank%3D0,Tcruzi:TcCLB.504797.60 link%3DTcCLB.504797.60:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C co [...]
+LmjF.01 chado gene 67443 68288 . - . ID=gene26;previous_systematic_id=LmjF01.0260
+LmjF.01 chado mRNA 67443 68288 . - . ID=mRNA26;Parent=gene26;previous_systematic_id=LmjF1.0260,LmjF01.0260:mRNA
+LmjF.01 chado CDS 67443 68288 . - 0 Parent=mRNA26;previous_systematic_id=LmjF01.0260:exon:1
+###
+LmjF.01 chado polypeptide 67443 68288 . - . Derives_from=LmjF.01.0260:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0260 link%3DLinJ.01.0260:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0260:pep%3B rank%3D0,Tcruzi:TcCLB.504797.50 link%3DTcCLB.504797.50:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.504797.50:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.339 [...]
+LmjF.01 chado gene 69584 69907 . - . ID=gene27;previous_systematic_id=LmjF01.0270
+LmjF.01 chado mRNA 69584 69907 . - . ID=mRNA27;Parent=gene27;previous_systematic_id=LmjF1.0270,LmjF01.0270:mRNA
+LmjF.01 chado CDS 69584 69907 . - 0 Parent=mRNA27;previous_systematic_id=LmjF01.0270:exon:1
+###
+LmjF.01 chado polypeptide 69584 69907 . - . Derives_from=LmjF.01.0270:mRNA;Ontology_term=GO:0045454;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.511577.83 link%3DTcCLB.511577.83:pep type%3Dorthologous_to%3Bproduct%3Dthioredoxin%2C putative%3Bmatch_name%3DTcCLB.511577.83:pep%3B rank%3D0,Lmexicana:LmxM.01.0270 link%3DLmxM.01.0270.1:pep type%3Dorthologous_to%2C Tbruceibrucei927:Tb927.9.3370 link%3DTb927.9.3370:pep type%3Dorthologous_to%2C Tcongolense:TcIL300 [...]
+LmjF.01 chado gene 71546 72787 . - . ID=gene28;previous_systematic_id=LmjF01.0280
+LmjF.01 chado mRNA 71546 72787 . - . ID=mRNA28;Parent=gene28;previous_systematic_id=LmjF1.0280,LmjF01.0280:mRNA
+LmjF.01 chado CDS 71546 72787 . - 0 Parent=mRNA28;previous_systematic_id=LmjF01.0280:exon:1
+###
+LmjF.01 chado polypeptide 71546 72787 . - . Derives_from=LmjF.01.0280:mRNA;gPI_anchor_cleavage_site=%3Bquery 377-377%3BGPI_cleavage_site_score%3D1.14;Ontology_term=GO:0009982,GO:0003723,GO:0001522;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.3350 link%3DTb927.9.3350:pep type%3Dorthologous_to%3Bproduct%3Dpseudouridylate synthase%2C putative%3Bmatch_name%3DTb927.9.3350:pep%3B rank%3D0,Linfantum:LinJ.01.0280 link%3DLinJ.01.0280:pep type%3Dortholo [...]
+LmjF.01 chado gene 74034 74552 . - . ID=gene29;previous_systematic_id=LmjF01.0290
+LmjF.01 chado mRNA 74034 74552 . - . ID=mRNA29;Parent=gene29;previous_systematic_id=LmjF1.0290,LmjF01.0290:mRNA
+LmjF.01 chado CDS 74034 74552 . - 0 Parent=mRNA29;previous_systematic_id=LmjF01.0290:exon:1
+###
+LmjF.01 chado polypeptide 74034 74552 . - . Derives_from=LmjF.01.0290:mRNA;gPI_anchor_cleavage_site=%3Bquery 154-154%3BGPI_cleavage_site_score%3D0.14400001;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.3340 link%3DTb927.9.3340:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTb927.9.3340:pep%3B rank%3D0,Tcruzi:TcCLB.511577.100 link%3DTcCLB.511577.100:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protei [...]
+LmjF.01 chado gene 75474 75653 . - . ID=gene30;previous_systematic_id=LmjF01.0300
+LmjF.01 chado mRNA 75474 75653 . - . ID=mRNA30;Parent=gene30;previous_systematic_id=LmjF1.0300,LmjF01.0300:mRNA
+LmjF.01 chado CDS 75474 75653 . - 0 Parent=mRNA30;previous_systematic_id=LmjF01.0300:exon:1
+###
+LmjF.01 chado polypeptide 75474 75653 . - . Derives_from=LmjF.01.0300:mRNA;gPI_anchor_cleavage_site=%3Bquery 31-31%3BGPI_cleavage_site_score%3D0.25800002;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.01.0330 link%3DLbrM.01.0330:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLbrM.01.0330:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.3290 link%3DTb927.9.3290:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2 [...]
+LmjF.01 chado gene 76217 77383 . - . ID=gene31;previous_systematic_id=LmjF01.0310
+LmjF.01 chado mRNA 76217 77383 . - . ID=mRNA31;Parent=gene31;previous_systematic_id=LmjF1.0310,LmjF01.0310:mRNA
+LmjF.01 chado CDS 76217 77383 . - 0 Parent=mRNA31;previous_systematic_id=LmjF01.0310:exon:1
+###
+LmjF.01 chado polypeptide 76217 77383 . - . Dbxref=CTP:map00230,EC:3.6.1.11;Derives_from=LmjF.01.0310:mRNA;gPI_anchor_cleavage_site=%3Bquery 351-351%3BGPI_cleavage_site_score%3D0.52;Ontology_term=GO:0004309,GO:0006797,GO:0005737,GO:0030145;comment=constituitively expressed (PMID:17188763);literature=PMID:12651027,PMID:21363968,PMID:21208463;orthologous_to=Tbruceibrucei927:Tb927.9.3280 link%3DTb927.9.3280:pep type%3Dorthologous_to%3Bproduct%3Dacidocalcisomal exopolyphosphatase%3Bmatch_nam [...]
+LmjF.01 chado gene 77741 78172 . - . ID=gene32;previous_systematic_id=LmjF01.0315
+LmjF.01 chado mRNA 77741 78172 . - . ID=mRNA32;Parent=gene32;previous_systematic_id=LmjF01.0315:mRNA
+LmjF.01 chado CDS 77741 78172 . - 0 Parent=mRNA32;previous_systematic_id=LmjF01.0315:exon:1
+###
+LmjF.01 chado polypeptide 77741 78172 . - . Derives_from=LmjF.01.0315:mRNA;Ontology_term=GO:0005783;cytoplasmic_polypeptide_region=%3Bquery 1-31%3B,%3Bquery 127-143%3B;membrane_structure=tmhmm%3B%3Bquery 1-143%3B;non_cytoplasmic_polypeptide_region=%3Bquery 55-103%3B;orthologous_to=Linfantum:LinJ.01.0320 link%3DLinJ.01.0320:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0320:pep%3B rank%3D0,Lmexicana:LmxM.01.0315 link%3DLmxM.01.0315.1:pep ty [...]
+LmjF.01 chado gene 79145 80068 . + . ID=gene33;previous_systematic_id=LmjF01.0320
+LmjF.01 chado mRNA 79145 80068 . + . ID=mRNA33;Parent=gene33;previous_systematic_id=LmjF1.0320,LmjF01.0320:mRNA
+LmjF.01 chado CDS 79145 80068 . + 0 Parent=mRNA33;previous_systematic_id=LmjF01.0320:exon:1
+###
+LmjF.01 chado polypeptide 79145 80068 . + . Derives_from=LmjF.01.0320:mRNA;gPI_anchor_cleavage_site=%3Bquery 275-275%3BGPI_cleavage_site_score%3D0.52;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.3760 link%3DTb927.9.3760:pep type%3Dorthologous_to%3Bproduct%3Dpoly(A) export protein%2C putative%3Bmatch_name%3DTb927.9.3760:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0360 link%3DLbrM.01.0360:pep type%3Dorthologous_to%3Bproduct%3Dpoly(A) export protein%2C [...]
+LmjF.01 chado gene 80535 81164 . + . ID=gene34;previous_systematic_id=LmjF01.0330
+LmjF.01 chado mRNA 80535 81164 . + . ID=mRNA34;Parent=gene34;previous_systematic_id=LmjF1.0330,LmjF01.0330:mRNA
+LmjF.01 chado CDS 80535 81164 . + 0 Parent=mRNA34;previous_systematic_id=LmjF01.0330:exon:1
+###
+LmjF.01 chado polypeptide 80535 81164 . + . Derives_from=LmjF.01.0330:mRNA;gPI_anchor_cleavage_site=%3Bquery 183-183%3BGPI_cleavage_site_score%3D0.1462;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 103-209%3B;membrane_structure=tmhmm%3B%3Bquery 1-209%3B;non_cytoplasmic_polypeptide_region=%3Bquery 1-79%3B;orthologous_to=Lbraziliensis:LbrM.01.0370 link%3DLbrM.01.0370:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_ [...]
+LmjF.01 chado gene 81749 82042 . + . ID=gene35;previous_systematic_id=LmjF01.0335
+LmjF.01 chado mRNA 81749 82042 . + . ID=mRNA35;Parent=gene35;previous_systematic_id=37.t00085,LmjF01.0335:mRNA
+LmjF.01 chado CDS 81749 82042 . + 0 Parent=mRNA35;previous_systematic_id=LmjF01.0335:exon:1
+###
+LmjF.01 chado polypeptide 81749 82042 . + . Derives_from=LmjF.01.0335:mRNA;gPI_anchor_cleavage_site=%3Bquery 73-73%3BGPI_cleavage_site_score%3D0.22039998;cytoplasmic_polypeptide_region=%3Bquery 1-6%3B,%3Bquery 67-97%3B;membrane_structure=tmhmm%3B%3Bquery 1-97%3B;non_cytoplasmic_polypeptide_region=%3Bquery 30-43%3B;orthologous_to=Lbraziliensis:LbrM.01.0380 link%3DLbrM.01.0380:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLbrM.01.0380:pep%3B rank%3D [...]
+LmjF.01 chado gene 83341 84117 . + . ID=gene36;previous_systematic_id=LmjF01.0340
+LmjF.01 chado mRNA 83341 84117 . + . ID=mRNA36;Parent=gene36;previous_systematic_id=LmjF1.0340,LmjF01.0340:mRNA
+LmjF.01 chado CDS 83341 84117 . + 0 Parent=mRNA36;previous_systematic_id=LmjF01.0340:exon:1
+###
+LmjF.01 chado polypeptide 83341 84117 . + . Derives_from=LmjF.01.0340:mRNA;gPI_anchor_cleavage_site=%3Bquery 231-231%3BGPI_cleavage_site_score%3D0.12900001;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 1-155%3B,%3Bquery 208-219%3B;membrane_structure=tmhmm%3B%3Bquery 1-258%3B;non_cytoplasmic_polypeptide_region=%3Bquery 176-184%3B,%3Bquery 243-258%3B;orthologous_to=Tcruzi:TcCLB.511577.150 link%3DTcCLB.511577.150:pep type%3Dorthologous_to%2C Tcruz [...]
+LmjF.01 chado gene 85901 88105 . + . ID=gene37;previous_systematic_id=LmjF01.0350
+LmjF.01 chado mRNA 85901 88105 . + . ID=mRNA37;Parent=gene37;previous_systematic_id=LmjF1.0350,LmjF01.0350:mRNA
+LmjF.01 chado CDS 85901 88105 . + 0 Parent=mRNA37;previous_systematic_id=LmjF01.0350:exon:1
+###
+LmjF.01 chado polypeptide 85901 88105 . + . Derives_from=LmjF.01.0350:mRNA;gPI_anchor_cleavage_site=%3Bquery 717-717%3BGPI_cleavage_site_score%3D3.7410002;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0370 link%3DLinJ.01.0370:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0370:pep%3B rank%3D0,Tcruzi:TcCLB.511577.160 link%3DTcCLB.511577.160:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C con [...]
+LmjF.01 chado gene 88974 89543 . + . ID=gene38;previous_systematic_id=LmjF01.0360
+LmjF.01 chado mRNA 88974 89543 . + . ID=mRNA38;Parent=gene38;previous_systematic_id=LmjF1.0360,LmjF01.0360:mRNA
+LmjF.01 chado CDS 88974 89543 . + 0 Parent=mRNA38;previous_systematic_id=LmjF01.0360:exon:1
+###
+LmjF.01 chado polypeptide 88974 89543 . + . Derives_from=LmjF.01.0360:mRNA;gPI_anchor_cleavage_site=%3Bquery 172-172%3BGPI_cleavage_site_score%3D2.1199;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 1-118%3B;membrane_structure=tmhmm%3B%3Bquery 1-189%3B;non_cytoplasmic_polypeptide_region=%3Bquery 142-189%3B;orthologous_to=Linfantum:LinJ.01.0380 link%3DLinJ.01.0380:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_nam [...]
+LmjF.01 chado gene 90100 90666 . + . ID=gene39;previous_systematic_id=LmjF01.0370
+LmjF.01 chado mRNA 90100 90666 . + . ID=mRNA39;Parent=gene39;previous_systematic_id=LmjF1.0370,LmjF01.0370:mRNA
+LmjF.01 chado CDS 90100 90666 . + 0 Parent=mRNA39;previous_systematic_id=LmjF01.0370:exon:1
+###
+LmjF.01 chado polypeptide 90100 90666 . + . Derives_from=LmjF.01.0370:mRNA;gPI_anchor_cleavage_site=%3Bquery 157-157%3BGPI_cleavage_site_score%3D0.75399995;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 1-19%3B,%3Bquery 123-188%3B;membrane_structure=tmhmm%3B%3Bquery 1-188%3B;non_cytoplasmic_polypeptide_region=%3Bquery 38-99%3B;orthologous_to=Linfantum:LinJ.01.0390 link%3DLinJ.01.0390:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C [...]
+LmjF.01 chado gene 91351 93807 . + . ID=gene40;previous_systematic_id=LmjF01.0380
+LmjF.01 chado mRNA 91351 93807 . + . ID=mRNA40;Parent=gene40;previous_systematic_id=LmjF1.0380,LmjF01.0380:mRNA
+LmjF.01 chado CDS 91351 93807 . + 0 Parent=mRNA40;previous_systematic_id=LmjF01.0380:exon:1
+###
+LmjF.01 chado polypeptide 91351 93807 . + . Derives_from=LmjF.01.0380:mRNA;gPI_anchor_cleavage_site=%3Bquery 802-802%3BGPI_cleavage_site_score%3D0.72;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.506829.10 link%3DTcCLB.506829.10:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.506829.10:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0430 link%3DLbrM.01.0430:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C con [...]
+LmjF.01 chado gene 94762 97230 . + . ID=gene41;previous_systematic_id=LmjF01.0390
+LmjF.01 chado mRNA 94762 97230 . + . ID=mRNA41;Parent=gene41;previous_systematic_id=LmjF1.0390,LmjF01.0390:mRNA
+LmjF.01 chado CDS 94762 97230 . + 0 Parent=mRNA41;previous_systematic_id=LmjF01.0390:exon:1
+###
+LmjF.01 chado polypeptide 94762 97230 . + . Derives_from=LmjF.01.0390:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.506829.20 link%3DTcCLB.506829.20:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.506829.20:pep%3B rank%3D0,Tcruzi:TcCLB.504231.30 link%3DTcCLB.504231.30:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.504231.30:pep%3B rank%3D0,Tvivax:TvY486_0901330 [...]
+LmjF.01 chado gene 98194 99873 . + . ID=gene42;previous_systematic_id=LmjF01.0400
+LmjF.01 chado mRNA 98194 99873 . + . ID=mRNA42;Parent=gene42;previous_systematic_id=LmjF1.0400,LmjF01.0400:mRNA
+LmjF.01 chado CDS 98194 99873 . + 0 Parent=mRNA42;previous_systematic_id=LmjF01.0400:exon:1
+###
+LmjF.01 chado polypeptide 98194 99873 . + . Derives_from=LmjF.01.0400:mRNA;gPI_anchor_cleavage_site=%3Bquery 538-538%3BGPI_cleavage_site_score%3D0.12900001;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.01.0450 link%3DLbrM.01.0450:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLbrM.01.0450:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.3880 link%3DTb927.9.3900:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein [...]
+LmjF.01 chado gene 100528 101130 . + . ID=gene43;previous_systematic_id=LmjF01.0410
+LmjF.01 chado mRNA 100528 101130 . + . ID=mRNA43;Parent=gene43;previous_systematic_id=LmjF1.0410,LmjF01.0410:mRNA
+LmjF.01 chado CDS 100528 101130 . + 0 Parent=mRNA43;previous_systematic_id=LmjF01.0410:exon:1
+###
+LmjF.01 chado polypeptide 100528 101130 . + . Derives_from=LmjF.01.0410:mRNA;Ontology_term=GO:0003735,GO:0005840,GO:0006412,GO:0005622;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.506593.30 link%3DTcCLB.506593.30:pep type%3Dorthologous_to%3Bproduct%3Dribosomal protein S7%2C putative%3Bmatch_name%3DTcCLB.506593.30:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.3990 link%3DTb927.9.3990:pep type%3Dorthologous_to%3Bproduct%3Dribosomal protein S7%2C putative%3Bmatch [...]
+LmjF.01 chado gene 102444 103046 . + . ID=gene44;previous_systematic_id=LmjF01.0420
+LmjF.01 chado mRNA 102444 103046 . + . ID=mRNA44;Parent=gene44;previous_systematic_id=LmjF1.0420,LmjF01.0420:mRNA
+LmjF.01 chado CDS 102444 103046 . + 0 Parent=mRNA44;previous_systematic_id=LmjF01.0420:exon:1
+###
+LmjF.01 chado polypeptide 102444 103046 . + . Derives_from=LmjF.01.0420:mRNA;Ontology_term=GO:0005840,GO:0003735,GO:0005622,GO:0006412;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.506593.30 link%3DTcCLB.506593.30:pep type%3Dorthologous_to%3Bproduct%3Dribosomal protein S7%2C putative%3Bmatch_name%3DTcCLB.506593.30:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.3920 link%3DTb927.9.3920:pep type%3Dorthologous_to%3Bproduct%3Dribosomal protein S7%2C putative%3Bmatch [...]
+LmjF.01 chado gene 103842 106073 . + . ID=gene45;previous_systematic_id=LmjF01.0430
+LmjF.01 chado mRNA 103842 106073 . + . ID=mRNA45;Parent=gene45;previous_systematic_id=LmjF1.0430,LmjF01.0430:mRNA
+LmjF.01 chado CDS 103842 106073 . + 0 Parent=mRNA45;previous_systematic_id=LmjF01.0430:exon:1
+###
+LmjF.01 chado polypeptide 103842 106073 . + . Derives_from=LmjF.01.0430:mRNA;Ontology_term=GO:0008270;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0450 link%3DLinJ.01.0450:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0450:pep%3B rank%3D0,Tcruzi:TcCLB.506829.50 link%3DTcCLB.506829.50:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.506829.50:pep%3B rank%3D0,T [...]
+LmjF.01 chado gene 107438 109201 . + . ID=gene46;previous_systematic_id=LmjF01.0440
+LmjF.01 chado mRNA 107438 109201 . + . ID=mRNA46;Parent=gene46;previous_systematic_id=LmjF1.0440,LmjF01.0440:mRNA
+LmjF.01 chado CDS 107438 109201 . + 0 Parent=mRNA46;previous_systematic_id=LmjF01.0440:exon:1
+###
+LmjF.01 chado polypeptide 107438 109201 . + . Derives_from=LmjF.01.0440:mRNA;gPI_anchor_cleavage_site=%3Bquery 553-553%3BGPI_cleavage_site_score%3D0.2924;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 1-25%3B,%3Bquery 77-82%3B,%3Bquery 143-204%3B,%3Bquery 254-341%3B,%3Bquery 394-394%3B,%3Bquery 452-463%3B,%3Bquery 521-587%3B;membrane_structure=tmhmm%3B%3Bquery 1-587%3B;non_cytoplasmic_polypeptide_region=%3Bquery 46-54%3B,%3Bquery 106-119%3B,%3Bq [...]
+LmjF.01 chado gene 112139 112795 . + . ID=gene47;Name=PNC1;previous_systematic_id=LmjF01.0450
+LmjF.01 chado mRNA 112139 112795 . + . ID=mRNA47;Parent=gene47;previous_systematic_id=LmjF1.0450,LmjF01.0450:mRNA
+LmjF.01 chado CDS 112139 112795 . + 0 Parent=mRNA47;previous_systematic_id=LmjF01.0450:exon:1
+###
+LmjF.01 chado polypeptide 112139 112795 . + . Dbxref=PDB:3R2J;Derives_from=LmjF.01.0450:mRNA;gPI_anchor_cleavage_site=%3Bquery 188-188%3BGPI_cleavage_site_score%3D0.702;Ontology_term=GO:0009435,GO:0005829,GO:0008936;comment=constituitively expressed (PMID:17188763);literature=PMID:21819459;orthologous_to=Tcruzi:TcCLB.506593.60 link%3DTcCLB.506593.60:pep type%3Dorthologous_to%3Bproduct%3Dnicotinamidase%2C putative%3Bmatch_name%3DTcCLB.506593.60:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0500 l [...]
+LmjF.01 chado gene 114903 119183 . + . ID=gene48;previous_systematic_id=LmjF01.0460
+LmjF.01 chado mRNA 114903 119183 . + . ID=mRNA48;Parent=gene48;previous_systematic_id=LmjF1.0460,LmjF01.0460:mRNA
+LmjF.01 chado CDS 114903 119183 . + 0 Parent=mRNA48;previous_systematic_id=LmjF01.0460:exon:1
+###
+LmjF.01 chado polypeptide 114903 119183 . + . Derives_from=LmjF.01.0460:mRNA;Ontology_term=GO:0052106,GO:0044145;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.4080 link%3DTb927.9.4080:pep type%3Dorthologous_to%3Bproduct%3Dconserved protein%3Bmatch_name%3DTb927.9.4080:pep%3B rank%3D0,Tcruzi:TcCLB.506829.90 link%3DTcCLB.506829.90:pep type%3Dorthologous_to%3Bproduct%3Dconserved protein%3Bmatch_name%3DTcCLB.506829.90:pep%3B rank%3D0,Tcruzi:TcCLB.50 [...]
+LmjF.01 chado gene 121759 123849 . + . ID=gene49;previous_systematic_id=LmjF01.0470
+LmjF.01 chado mRNA 121759 123849 . + . ID=mRNA49;Parent=gene49;previous_systematic_id=LmjF1.0470,LmjF01.0470:mRNA
+LmjF.01 chado CDS 121759 123849 . + 0 Parent=mRNA49;previous_systematic_id=LmjF01.0470:exon:1
+###
+LmjF.01 chado polypeptide 121759 123849 . + . Dbxref=EC:6.2.1.3;Derives_from=LmjF.01.0470:mRNA;Ontology_term=GO:0008152,GO:0003824;comment=constituitively expressed (PMID:17188763);literature=PMID:20382188,PMID:11038316,PMID:11535136;orthologous_to=Tcruzi:TcCLB.504177.10 link%3DTcCLB.504177.10:pep type%3Dorthologous_to%3Bproduct%3Dfatty acyl CoA synthetase 2%2C putative%3Bmatch_name%3DTcCLB.504177.10:pep%3B rank%3D0,Tcruzi:TcCLB.511581.10 link%3DTcCLB.511581.10:pep type%3Dorthologous_to% [...]
+LmjF.01 chado gene 124711 125790 . + . ID=gene50;previous_systematic_id=LmjF01.0480
+LmjF.01 chado mRNA 124711 125790 . + . ID=mRNA50;Parent=gene50;previous_systematic_id=LmjF1.0480,LmjF01.0480:mRNA
+LmjF.01 chado CDS 124711 125790 . + 0 Parent=mRNA50;previous_systematic_id=LmjF01.0480:exon:1
+###
+LmjF.01 chado polypeptide 124711 125790 . + . Dbxref=GI:11466138,CTP:map00260;Derives_from=LmjF.01.0480:mRNA;gPI_anchor_cleavage_site=%3Bquery 326-326%3BGPI_cleavage_site_score%3D0.10399999;Ontology_term=GO:0016829,GO:0006520;comment=constituitively expressed (PMID:17188763) status and product annotation changed from HPC based on Pfam hit%2C 8Jul08%2C chf;controlled_curation=term%3DX-ray crystal structure solved%3Bcv%3DCC_genedb_controlledcuration%3B;orthologous_to=Lmexicana:LmxM.01.0480 [...]
+LmjF.01 chado gene 127704 129800 . + . ID=gene51;previous_systematic_id=LmjF01.0490
+LmjF.01 chado mRNA 127704 129800 . + . ID=mRNA51;Parent=gene51;previous_systematic_id=LmjF1.0490,LmjF01.0490:mRNA
+LmjF.01 chado CDS 127704 129800 . + 0 Parent=mRNA51;previous_systematic_id=LmjF01.0490:exon:1
+###
+LmjF.01 chado polypeptide 127704 129800 . + . Dbxref=EC:6.2.1.3;Derives_from=LmjF.01.0490:mRNA;Ontology_term=GO:0008152,GO:0003824;comment=constituitively expressed (PMID:17188763);literature=PMID:20382188,PMID:11535136,PMID:11038316;orthologous_to=Tcruzi:TcCLB.494675.10 link%3DTcCLB.494675.10:pep type%3Dorthologous_to%3Bproduct%3Dfatty acyl CoA synthetase 2%2C putative%3Bmatch_name%3DTcCLB.494675.10:pep%3B rank%3D0,Tcruzi:TcCLB.504177.10 link%3DTcCLB.504177.10:pep type%3Dorthologous_to% [...]
+LmjF.01 chado gene 130947 133070 . + . ID=gene52;previous_systematic_id=LmjF01.0500
+LmjF.01 chado mRNA 130947 133070 . + . ID=mRNA52;Parent=gene52;previous_systematic_id=LmjF1.0500,LmjF01.0500:mRNA
+LmjF.01 chado CDS 130947 133070 . + 0 Parent=mRNA52;previous_systematic_id=LmjF01.0500:exon:1
+###
+LmjF.01 chado polypeptide 130947 133070 . + . Dbxref=EC:6.2.1.3;Derives_from=LmjF.01.0500:mRNA;Ontology_term=GO:0003824,GO:0008152;comment=constituitively expressed (PMID:17188763);literature=PMID:20382188,PMID:11038316,PMID:11535136;orthologous_to=Tcruzi:TcCLB.511579.9 link%3DTcCLB.511579.9:pep type%3Dorthologous_to%3Bproduct%3Dfatty acyl CoA syntetase 1%2C putative%3Bmatch_name%3DTcCLB.511579.9:pep%3B rank%3D0,Linfantum:LinJ.01.0520 link%3DLinJ.01.0520:pep type%3Dorthologous_to%3Bprodu [...]
+LmjF.01 chado gene 136526 137110 . + . ID=gene53;previous_systematic_id=LmjF01.0510
+LmjF.01 chado mRNA 136526 137110 . + . ID=mRNA53;Parent=gene53;previous_systematic_id=LmjF1.0510,LmjF01.0510:mRNA
+LmjF.01 chado CDS 136526 137110 . + 0 Parent=mRNA53;previous_systematic_id=LmjF01.0510:exon:1
+###
+LmjF.01 chado polypeptide 136526 137110 . + . Dbxref=EC:6.2.1.3;Derives_from=LmjF.01.0510:mRNA;gPI_anchor_cleavage_site=%3Bquery 163-163%3BGPI_cleavage_site_score%3D0.442;comment=This CDS is much shorter compared to other Fatty acyl coA synthetases. And has no orthologs in other Leishmania spp. Therefore%2C may be a truncated pseudogene.;controlled_curation=term%3Dconstitutive expression%3Bcv%3DCC_genedb_controlledcuration%3Bdb_xref%3DPMID:17188763%3Bdate%3D20110105%3Bevidence%3DInferred [...]
+LmjF.01 chado gene 137710 139857 . + . ID=gene54;previous_systematic_id=LmjF01.0520
+LmjF.01 chado mRNA 137710 139857 . + . ID=mRNA54;Parent=gene54;previous_systematic_id=LmjF1.0520,LmjF01.0520:mRNA
+LmjF.01 chado CDS 137710 139857 . + 0 Parent=mRNA54;previous_systematic_id=LmjF01.0520:exon:1
+###
+LmjF.01 chado polypeptide 137710 139857 . + . Dbxref=EC:6.2.1.3;Derives_from=LmjF.01.0520:mRNA;Ontology_term=GO:0008152,GO:0003824;comment=constituitively expressed (PMID:17188763);literature=PMID:11038316,PMID:20382188,PMID:11535136;orthologous_to=Tbruceibrucei927:Tb927.9.4230 link%3DTb927.9.4230:pep type%3Dorthologous_to%3Bproduct%3Dfatty acyl CoA synthetase 4%3Bmatch_name%3DTb927.9.4230:pep%3B rank%3D0,Tcruzi:TcCLB.511581.20 link%3DTcCLB.511581.20:pep type%3Dorthologous_to%3Bproduct%3 [...]
+LmjF.01 chado gene 143750 148573 . + . ID=gene55;previous_systematic_id=LmjF01.0530
+LmjF.01 chado mRNA 143750 148573 . + . ID=mRNA55;Parent=gene55;previous_systematic_id=LmjF1.0530,LmjF01.0530:mRNA
+LmjF.01 chado CDS 143750 148573 . + 0 Parent=mRNA55;previous_systematic_id=LmjF01.0530:exon:1
+###
+LmjF.01 chado polypeptide 143750 148573 . + . Dbxref=EC:6.2.1.3;Derives_from=LmjF.01.0530:mRNA;gPI_anchor_cleavage_site=%3Bquery 1574-1574%3BGPI_cleavage_site_score%3D0.156;Ontology_term=GO:0008152,GO:0003824;comment=constituitively expressed (PMID:17188763);literature=PMID:11038316,PMID:11535136,PMID:20382188;orthologous_to=Lbraziliensis:LbrM.01.0260 link%3DLbrM.01.0260:pep type%3Dorthologous_to%3Bproduct%3Dlong-chain-fatty-acid-CoA ligase%2C putative%3Bmatch_name%3DLbrM.01.0260:pep%3B [...]
+LmjF.01 chado gene 149673 151652 . + . ID=gene56;previous_systematic_id=LmjF01.0540
+LmjF.01 chado mRNA 149673 151652 . + . ID=mRNA56;Parent=gene56;previous_systematic_id=LmjF1.0540,LmjF01.0540:mRNA
+LmjF.01 chado CDS 149673 151652 . + 0 Parent=mRNA56;previous_systematic_id=LmjF01.0540:exon:1
+###
+LmjF.01 chado polypeptide 149673 151652 . + . Derives_from=LmjF.01.0540:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.504177.30 link%3DTcCLB.504177.30:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.504177.30:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0570 link%3DLbrM.01.0570:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLbrM.01.0570:pep%3B rank%3D0,Linfantum:LinJ.01.0560 [...]
+LmjF.01 chado gene 152788 153657 . + . ID=gene57;previous_systematic_id=LmjF01.0550
+LmjF.01 chado mRNA 152788 153657 . + . ID=mRNA57;Parent=gene57;previous_systematic_id=LmjF1.0550,LmjF01.0550:mRNA
+LmjF.01 chado CDS 152788 153657 . + 0 Parent=mRNA57;previous_systematic_id=LmjF01.0550:exon:1
+###
+LmjF.01 chado polypeptide 152788 153657 . + . Derives_from=LmjF.01.0550:mRNA;gPI_anchor_cleavage_site=%3Bquery 263-263%3BGPI_cleavage_site_score%3D0.516;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.511583.20 link%3DTcCLB.511583.20:pep type%3Dorthologous_to%2C Lmexicana:LmxM.01.0550 link%3DLmxM.01.0550.1:pep type%3Dorthologous_to%2C Linfantum:LinJ.01.0570 link%3DLinJ.01.0570:pep type%3Dorthologous_to%2C Lbraziliensis:LbrM.01.0580 link%3DLbrM.01.0580:pep ty [...]
+LmjF.01 chado gene 154977 156839 . + . ID=gene58;previous_systematic_id=LmjF01.0560
+LmjF.01 chado mRNA 154977 156839 . + . ID=mRNA58;Parent=gene58;previous_systematic_id=LmjF1.0560,LmjF01.0560:mRNA
+LmjF.01 chado CDS 154977 156839 . + 0 Parent=mRNA58;previous_systematic_id=LmjF01.0560:exon:1
+###
+LmjF.01 chado polypeptide 154977 156839 . + . Derives_from=LmjF.01.0560:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.510153.10 link%3DTcCLB.510153.10:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.510153.10:pep%3B rank%3D0,Linfantum:LinJ.01.0580 link%3DLinJ.01.0580:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0580:pep%3B rank%3D0,Tcruzi:TcCLB.511583.30 lin [...]
+LmjF.01 chado gene 157437 158417 . + . ID=gene59;previous_systematic_id=LmjF01.0570
+LmjF.01 chado mRNA 157437 158417 . + . ID=mRNA59;Parent=gene59;previous_systematic_id=LmjF1.0570,LmjF01.0570:mRNA
+LmjF.01 chado CDS 157437 158417 . + 0 Parent=mRNA59;previous_systematic_id=LmjF01.0570:exon:1
+###
+LmjF.01 chado polypeptide 157437 158417 . + . Derives_from=LmjF.01.0570:mRNA;Ontology_term=GO:0016020,GO:0006812,GO:0008324;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 119-143%3B,%3Bquery 199-326%3B;membrane_structure=tmhmm%3B%3Bquery 1-326%3B;non_cytoplasmic_polypeptide_region=%3Bquery 1-95%3B,%3Bquery 167-175%3B;orthologous_to=Tbruceibrucei927:Tb927.9.4310 link%3DTb927.9.4310:pep type%3Dorthologous_to%3Bproduct%3Dtricarboxylate carrier%2C p [...]
+LmjF.01 chado gene 159196 162105 . + . ID=gene60;previous_systematic_id=LmjF01.0580
+LmjF.01 chado mRNA 159196 162105 . + . ID=mRNA60;Parent=gene60;previous_systematic_id=LmjF1.0580,LmjF01.0580:mRNA
+LmjF.01 chado CDS 159196 162105 . + 0 Parent=mRNA60;previous_systematic_id=LmjF01.0580:exon:1
+###
+LmjF.01 chado polypeptide 159196 162105 . + . Derives_from=LmjF.01.0580:mRNA;gPI_anchor_cleavage_site=%3Bquery 939-939%3BGPI_cleavage_site_score%3D0.702;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.510155.10 link%3DTcCLB.510155.10:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.510155.10:pep%3B rank%3D0,Tcruzi:TcCLB.511585.10 link%3DTcCLB.511585.10:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C c [...]
+LmjF.01 chado gene 163208 164482 . + . ID=gene61;previous_systematic_id=LmjF01.0590
+LmjF.01 chado mRNA 163208 164482 . + . ID=mRNA61;Parent=gene61;previous_systematic_id=LmjF1.0590,LmjF01.0590:mRNA
+LmjF.01 chado CDS 163208 164482 . + 0 Parent=mRNA61;previous_systematic_id=LmjF01.0590:exon:1
+###
+LmjF.01 chado polypeptide 163208 164482 . + . Dbxref=EC:6.5.1.3;Derives_from=LmjF.01.0590:mRNA;gPI_anchor_cleavage_site=%3Bquery 407-407%3BGPI_cleavage_site_score%3D0.12900001;Ontology_term=GO:0031019,GO:0044429,GO:0031019,GO:0009451,GO:0003972,GO:0005524;comment=RIT-Seq data added pre-publication February 2011 mitochondrial localisation predicted by MitoCarta (PMID:20660476) constituitively expressed (PMID:17188763) possible 44 amino acids signal peptide at N terminus (PMID:1113432)%3B [...]
+LmjF.01 chado gene 165646 171000 . + . ID=gene62;previous_systematic_id=LmjF01.0600
+LmjF.01 chado mRNA 165646 171000 . + . ID=mRNA62;Parent=gene62;previous_systematic_id=LmjF1.0600,LmjF01.0600:mRNA
+LmjF.01 chado CDS 165646 171000 . + 0 Parent=mRNA62;previous_systematic_id=LmjF01.0600:exon:1
+###
+LmjF.01 chado polypeptide 165646 171000 . + . Derives_from=LmjF.01.0600:mRNA;gPI_anchor_cleavage_site=%3Bquery 1758-1758%3BGPI_cleavage_site_score%3D0.152;Ontology_term=GO:0005622,GO:0005097,GO:0032313;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.4370 link%3DTb927.9.4370:pep type%3Dorthologous_to%3Bproduct%3DGTPase activating protein%2C putative%3Bmatch_name%3DTb927.9.4370:pep%3B rank%3D0,Tcruzi:TcCLB.511585.30 link%3DTcCLB.511585.30:pep type% [...]
+LmjF.01 chado gene 172003 172734 . + . ID=gene63;previous_systematic_id=LmjF01.0610
+LmjF.01 chado mRNA 172003 172734 . + . ID=mRNA63;Parent=gene63;previous_systematic_id=LmjF1.0610,LmjF01.0610:mRNA
+LmjF.01 chado CDS 172003 172734 . + 0 Parent=mRNA63;previous_systematic_id=LmjF01.0610:exon:1
+###
+LmjF.01 chado polypeptide 172003 172734 . + . Derives_from=LmjF.01.0610:mRNA;gPI_anchor_cleavage_site=%3Bquery 214-214%3BGPI_cleavage_site_score%3D0.172;Ontology_term=GO:0004190,GO:0006508;comment=Inhibited by HIV protease inhibitors. Knock-out of LmjF.01.0610 results in a high-secreton phenotype. WT LmjF.01.0610 can rescue this same phenotype in yeast DDI1 knockouts. (PMID:21266539) MR 14/07/2011 constituitively expressed (PMID:17188763);orthologous_to=Tcongolense:TcIL3000_9_1440 link%3 [...]
+LmjF.01 chado gene 173484 175259 . + . ID=gene64;previous_systematic_id=LmjF01.0620
+LmjF.01 chado mRNA 173484 175259 . + . ID=mRNA64;Parent=gene64;previous_systematic_id=LmjF1.0620,LmjF01.0620:mRNA
+LmjF.01 chado CDS 173484 175259 . + 0 Parent=mRNA64;previous_systematic_id=LmjF01.0620:exon:1
+###
+LmjF.01 chado polypeptide 173484 175259 . + . Derives_from=LmjF.01.0620:mRNA;gPI_anchor_cleavage_site=%3Bquery 569-569%3BGPI_cleavage_site_score%3D0.408;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.01.0020 link%3DLbrM.01.0020:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLbrM.01.0020:pep%3B rank%3D0,Tcruzi:TcCLB.510155.50 link%3DTcCLB.510155.50:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C con [...]
+LmjF.01 chado gene 177728 179605 . + . ID=gene65;previous_systematic_id=LmjF01.0630
+LmjF.01 chado mRNA 177728 179605 . + . ID=mRNA65;Parent=gene65;previous_systematic_id=LmjF1.0630,LmjF01.0630:mRNA
+LmjF.01 chado CDS 177728 179605 . + 0 Parent=mRNA65;previous_systematic_id=LmjF01.0630:exon:1
+###
+LmjF.01 chado polypeptide 177728 179605 . + . Derives_from=LmjF.01.0630:mRNA;gPI_anchor_cleavage_site=%3Bquery 608-608%3BGPI_cleavage_site_score%3D2.4940002;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0650 link%3DLinJ.01.0650:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C unknown function%3Bmatch_name%3DLinJ.01.0650:pep%3B rank%3D0,Linfantum:LinJ.01.0650 link%3DLinJ.01.0650:pep type%3Dorthologous_to%2C Lmexicana:LmxM.01.0630 link%3DLm [...]
+LmjF.01 chado gene 181458 184796 . + . ID=gene66;previous_systematic_id=LmjF01.0640
+LmjF.01 chado mRNA 181458 184796 . + . ID=mRNA66;Parent=gene66;previous_systematic_id=LmjF1.0640,LmjF01.0640:mRNA
+LmjF.01 chado CDS 181458 184796 . + 0 Parent=mRNA66;previous_systematic_id=LmjF01.0640:exon:1
+###
+LmjF.01 chado polypeptide 181458 184796 . + . Derives_from=LmjF.01.0640:mRNA;gPI_anchor_cleavage_site=%3Bquery 1090-1090%3BGPI_cleavage_site_score%3D0.30960003;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 1-41%3B;membrane_structure=tmhmm%3B%3Bquery 1-1112%3B;non_cytoplasmic_polypeptide_region=%3Bquery 65-1112%3B;orthologous_to=Tbruceibrucei927:Tb927.9.4500 link%3DTb927.9.4500:pep type%3Dorthologous_to%3Bproduct%3Dheat shock protein%2C putative [...]
+LmjF.01 chado gene 185785 187269 . + . ID=gene67;previous_systematic_id=LmjF01.0650
+LmjF.01 chado mRNA 185785 187269 . + . ID=mRNA67;Parent=gene67;previous_systematic_id=LmjF1.0650,LmjF01.0650:mRNA
+LmjF.01 chado CDS 185785 187269 . + 0 Parent=mRNA67;previous_systematic_id=LmjF01.0650:exon:1
+###
+LmjF.01 chado polypeptide 185785 187269 . + . Dbxref=EC:3.4.99.41;Derives_from=LmjF.01.0650:mRNA;gPI_anchor_cleavage_site=%3Bquery 460-460%3BGPI_cleavage_site_score%3D0.49879998;Ontology_term=GO:0003824,GO:0006508,GO:0004222,GO:0008270;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.4520 link%3DTb927.9.4520:pep type%3Dorthologous_to%3Bproduct%3Dmitochondrial processing peptide beta subunit%2C putative%3Bmatch_name%3DTb927.9.4520:pep%3B rank%3D0,L [...]
+LmjF.01 chado gene 188567 193030 . + . ID=gene68;previous_systematic_id=LmjF01.0660
+LmjF.01 chado mRNA 188567 193030 . + . ID=mRNA68;Parent=gene68;previous_systematic_id=LmjF1.0660,LmjF01.0660:mRNA
+LmjF.01 chado CDS 188567 193030 . + 0 Parent=mRNA68;previous_systematic_id=LmjF01.0660:exon:1
+###
+LmjF.01 chado polypeptide 188567 193030 . + . Derives_from=LmjF.01.0660:mRNA;gPI_anchor_cleavage_site=%3Bquery 1471-1471%3BGPI_cleavage_site_score%3D0.72;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.511585.90 link%3DTcCLB.511585.90:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.511585.90:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.4530 link%3DTb927.9.4530:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein [...]
+LmjF.01 chado gene 194045 194962 . + . ID=gene69;previous_systematic_id=LmjF01.0670
+LmjF.01 chado mRNA 194045 194962 . + . ID=mRNA69;Parent=gene69;previous_systematic_id=LmjF1.0670,LmjF01.0670:mRNA
+LmjF.01 chado CDS 194045 194962 . + 0 Parent=mRNA69;previous_systematic_id=LmjF01.0670:exon:1
+###
+LmjF.01 chado polypeptide 194045 194962 . + . Derives_from=LmjF.01.0670:mRNA;gPI_anchor_cleavage_site=%3Bquery 289-289%3BGPI_cleavage_site_score%3D0.76;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.510155.94 link%3DTcCLB.510155.94:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.510155.94:pep%3B rank%3D0,Linfantum:LinJ.01.0690 link%3DLinJ.01.0690:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conse [...]
+LmjF.01 chado gene 198854 201256 . + . ID=gene70;previous_systematic_id=LmjF01.0680
+LmjF.01 chado mRNA 198854 201256 . + . ID=mRNA70;Parent=gene70;previous_systematic_id=LmjF1.0680,LmjF01.0680:mRNA
+LmjF.01 chado CDS 198854 201256 . + 0 Parent=mRNA70;previous_systematic_id=LmjF01.0680:exon:1
+###
+LmjF.01 chado polypeptide 198854 201256 . + . Derives_from=LmjF.01.0680:mRNA;gPI_anchor_cleavage_site=%3Bquery 779-779%3BGPI_cleavage_site_score%3D0.344;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.01.0660 link%3DLbrM.01.0660:pep type%3Dorthologous_to%2C Lmexicana:LmxM.01.0680 link%3DLmxM.01.0680.1:pep type%3Dorthologous_to%2C Linfantum:LinJ.01.0700 link%3DLinJ.01.0700:pep type%3Dorthologous_to%3B cluster_name%3DTrypanosome:ORTHOMCL7639%3B program%3 [...]
+LmjF.01 chado gene 202894 203586 . + . ID=gene71;previous_systematic_id=LmjF01.0690
+LmjF.01 chado mRNA 202894 203586 . + . ID=mRNA71;Parent=gene71;previous_systematic_id=LmjF1.0690,LmjF01.0690:mRNA
+LmjF.01 chado CDS 202894 203586 . + 0 Parent=mRNA71;previous_systematic_id=LmjF01.0690:exon:1
+###
+LmjF.01 chado polypeptide 202894 203586 . + . Derives_from=LmjF.01.0690:mRNA;gPI_anchor_cleavage_site=%3Bquery 211-211%3BGPI_cleavage_site_score%3D0.13599999;comment=constituitively expressed (PMID:17188763);orthologous_to=,Lmexicana:LmxM.01.0690 link%3DLmxM.01.0690.1:pep type%3Dorthologous_to%2C Linfantum:LinJ.01.0710 link%3DLinJ.01.0710:pep type%3Dorthologous_to%2C Lbraziliensis:LbrM.01.0670 link%3DLbrM.01.0670:pep type%3Dorthologous_to%3B cluster_name%3DTrypanosome:ORTHOMCL7640%3B pro [...]
+LmjF.01 chado gene 206309 207073 . + . ID=gene72;previous_systematic_id=LmjF01.0700
+LmjF.01 chado mRNA 206309 207073 . + . ID=mRNA72;Parent=gene72;previous_systematic_id=LmjF1.0700,LmjF01.0700:mRNA
+LmjF.01 chado CDS 206309 207073 . + 0 Parent=mRNA72;previous_systematic_id=LmjF01.0700:exon:1
+###
+LmjF.01 chado polypeptide 206309 207073 . + . Derives_from=LmjF.01.0700:mRNA;gPI_anchor_cleavage_site=%3Bquery 228-228%3BGPI_cleavage_site_score%3D0.12900001;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.01.0680 link%3DLbrM.01.0680:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C unknown function%3Bmatch_name%3DLbrM.01.0680:pep%3B rank%3D0,Linfantum:LinJ.01.0720 link%3DLinJ.01.0720:pep type%3Dorthologous_to%3B product%3Dhypothetical prot [...]
+LmjF.01 chado gene 208464 210089 . + . ID=gene73;previous_systematic_id=LmjF01.0710
+LmjF.01 chado mRNA 208464 210089 . + . ID=mRNA73;Parent=gene73;previous_systematic_id=LmjF1.0710,LmjF01.0710:mRNA
+LmjF.01 chado CDS 208464 210089 . + 0 Parent=mRNA73;previous_systematic_id=LmjF01.0710:exon:1
+###
+LmjF.01 chado polypeptide 208464 210089 . + . Dbxref=EC:6.3.2.19;Derives_from=LmjF.01.0710:mRNA;gPI_anchor_cleavage_site=%3Bquery 521-521%3BGPI_cleavage_site_score%3D0.64800006;Ontology_term=GO:0006464,GO:0008641,GO:0005524;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0730 link%3DLinJ.01.0730:pep type%3Dorthologous_to%3Bproduct%3Dubiquitin activating enzyme%2C putative%3Bmatch_name%3DLinJ.01.0730:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0690 link%3DLbrM [...]
+LmjF.01 chado gene 210684 215417 . + . ID=gene74;previous_systematic_id=LmjF01.0720
+LmjF.01 chado mRNA 210684 215417 . + . ID=mRNA74;Parent=gene74;previous_systematic_id=LmjF1.0720,LmjF01.0720:mRNA
+LmjF.01 chado CDS 210684 215417 . + 0 Parent=mRNA74;previous_systematic_id=LmjF01.0720:exon:1
+###
+LmjF.01 chado polypeptide 210684 215417 . + . Derives_from=LmjF.01.0720:mRNA;gPI_anchor_cleavage_site=%3Bquery 1552-1552%3BGPI_cleavage_site_score%3D2.3220003;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.511585.140 link%3DTcCLB.511585.140:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.511585.140:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.4630 link%3DTb927.9.4630:pep type%3Dorthologous_to%2C Tcruzi:TcCLB.511585.1 [...]
+LmjF.01 chado gene 216579 223304 . + . ID=gene75;Name=mks6;previous_systematic_id=LmjF01.0730
+LmjF.01 chado mRNA 216579 223304 . + . ID=mRNA75;Parent=gene75;previous_systematic_id=LmjF1.0730,LmjF01.0730:mRNA
+LmjF.01 chado CDS 216579 223304 . + 0 Parent=mRNA75;previous_systematic_id=LmjF01.0730:exon:1
+###
+LmjF.01 chado polypeptide 216579 223304 . + . Derives_from=LmjF.01.0730:mRNA;gPI_anchor_cleavage_site=%3Bquery 2214-2214%3BGPI_cleavage_site_score%3D0.12900001;Ontology_term=GO:0036038;comment=constituitively expressed (PMID:17188763) Localisation to the Transition Zone depends on RP2 (GeneDB:Tb927.9.4640%3B ISO)%3B curator_FSF%3B date_20140417;orthologous_to=Tcongolense:TcIL3000_9_1540 link%3DTcIL3000_9_1540.1:pep type%3Dorthologous_to%2C Tbruceigambiense:Tbg972.9.2470 link%3DTbg972.9.2 [...]
+LmjF.01 chado gene 223998 226253 . + . ID=gene76;previous_systematic_id=LmjF01.0740
+LmjF.01 chado mRNA 223998 226253 . + . ID=mRNA76;Parent=gene76;previous_systematic_id=LmjF1.0740,LmjF01.0740:mRNA
+LmjF.01 chado CDS 223998 226253 . + 0 Parent=mRNA76;previous_systematic_id=LmjF01.0740:exon:1
+###
+LmjF.01 chado polypeptide 223998 226253 . + . Derives_from=LmjF.01.0740:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Tbruceibrucei927:Tb927.9.4660 link%3DTb927.9.4660:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTb927.9.4660:pep%3B rank%3D0,Linfantum:LinJ.01.0760 link%3DLinJ.01.0760:pep type%3Dorthologous_to%2C Tvivax:TvY486_0901650 link%3DTvY486_0901650:pep type%3Dorthologous_to%2C Tbruceibrucei927:Tb927.9.4660 link%3DTb [...]
+LmjF.01 chado gene 227560 231813 . + . ID=gene77;previous_systematic_id=LmjF01.0750
+LmjF.01 chado mRNA 227560 231813 . + . ID=mRNA77;Parent=gene77;previous_systematic_id=LmjF1.0750,LmjF01.0750:mRNA
+LmjF.01 chado CDS 227560 231813 . + 0 Parent=mRNA77;previous_systematic_id=LmjF01.0750:exon:1
+###
+LmjF.01 chado polypeptide 227560 231813 . + . Dbxref=EC:2.7.1.37;Derives_from=LmjF.01.0750:mRNA;gPI_anchor_cleavage_site=%3Bquery 1394-1394%3BGPI_cleavage_site_score%3D0.46799996;Ontology_term=GO:0005524,GO:0006468,GO:0004674;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.01.0720 link%3DLbrM.01.0720:pep type%3Dorthologous_to%3Bproduct%3Dprotein kinase%2C putative%3Bmatch_name%3DLbrM.01.0720:pep%3B rank%3D0,Tcruzi:TcCLB.510155.160 link%3DTcCLB.510155.1 [...]
+LmjF.01 chado gene 232419 233438 . + . ID=gene78;previous_systematic_id=LmjF01.0760
+LmjF.01 chado mRNA 232419 233438 . + . ID=mRNA78;Parent=gene78;previous_systematic_id=LmjF1.0760,LmjF01.0760:mRNA
+LmjF.01 chado CDS 232419 233438 . + 0 Parent=mRNA78;previous_systematic_id=LmjF01.0760:exon:1
+###
+LmjF.01 chado polypeptide 232419 233438 . + . Derives_from=LmjF.01.0760:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.510155.170 link%3DTcCLB.510155.170:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.510155.170:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0730 link%3DLbrM.01.0730:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLbrM.01.0730:pep%3B rank%3D0,Lbraziliensis:LbrM. [...]
+LmjF.01 chado gene 234392 235603 . + . ID=gene79;previous_systematic_id=LmjF01.0770
+LmjF.01 chado mRNA 234392 235603 . + . ID=mRNA79;Parent=gene79;previous_systematic_id=LmjF1.0770,LmjF01.0770:mRNA
+LmjF.01 chado CDS 234392 235603 . + 0 Parent=mRNA79;previous_systematic_id=LmjF01.0770:exon:1
+###
+LmjF.01 chado polypeptide 234392 235603 . + . Derives_from=LmjF.01.0770:mRNA;gPI_anchor_cleavage_site=%3Bquery 365-365%3BGPI_cleavage_site_score%3D0.14400001;Ontology_term=GO:0004004,GO:0008186,GO:0003676,GO:0005524;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0790 link%3DLinJ.01.0790:pep type%3Dorthologous_to%3Bproduct%3Deukaryotic initiation factor 4a%2C putative%3Bmatch_name%3DLinJ.01.0790:pep%3B rank%3D0,Tbruceibrucei927:Tb927.9.4680 link%3DTb927 [...]
+LmjF.01 chado gene 237389 238600 . + . ID=gene80;previous_systematic_id=LmjF01.0780
+LmjF.01 chado mRNA 237389 238600 . + . ID=mRNA80;Parent=gene80;previous_systematic_id=LmjF1.0780,LmjF01.0780:mRNA
+LmjF.01 chado CDS 237389 238600 . + 0 Parent=mRNA80;previous_systematic_id=LmjF01.0780:exon:1
+###
+LmjF.01 chado polypeptide 237389 238600 . + . Derives_from=LmjF.01.0780:mRNA;gPI_anchor_cleavage_site=%3Bquery 365-365%3BGPI_cleavage_site_score%3D0.14400001;Ontology_term=GO:0004004,GO:0008186,GO:0005737,GO:0006412,GO:0005524,GO:0003676;comment=constituitively expressed (PMID:17188763);literature=PMID:15694484;orthologous_to=Tcruzi:TcCLB.510155.180 link%3DTcCLB.510155.180:pep type%3Dorthologous_to%3Bproduct%3Deukaryotic initiation factor 4a%2C putative%3Bmatch_name%3DTcCLB.510155.180:pe [...]
+LmjF.01 chado gene 240769 242355 . + . ID=gene81;previous_systematic_id=LmjF01.0790
+LmjF.01 chado mRNA 240769 242355 . + . ID=mRNA81;Parent=gene81;previous_systematic_id=LmjF1.0790,LmjF01.0790:mRNA
+LmjF.01 chado CDS 240769 242355 . + 0 Parent=mRNA81;previous_systematic_id=LmjF01.0790:exon:1
+###
+LmjF.01 chado polypeptide 240769 242355 . + . Derives_from=LmjF.01.0790:mRNA;comment=constituitively expressed (PMID:17188763);orthologous_to=Tcruzi:TcCLB.511585.200 link%3DTcCLB.511585.200:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DTcCLB.511585.200:pep%3B rank%3D0,Lbraziliensis:LbrM.01.0750 link%3DLbrM.01.0750:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLbrM.01.0750:pep%3B rank%3D0,Tbruceibrucei927:Tb [...]
+LmjF.01 chado gene 244534 246063 . + . ID=gene82;previous_systematic_id=LmjF01.0800
+LmjF.01 chado mRNA 244534 246063 . + . ID=mRNA82;Parent=gene82;previous_systematic_id=LmjF1.0800,LmjF01.0800:mRNA
+LmjF.01 chado CDS 244534 246063 . + 0 Parent=mRNA82;previous_systematic_id=LmjF01.0800:exon:1
+###
+LmjF.01 chado polypeptide 244534 246063 . + . Derives_from=LmjF.01.0800:mRNA;gPI_anchor_cleavage_site=%3Bquery 476-476%3BGPI_cleavage_site_score%3D0.46799996;Ontology_term=GO:0008270,GO:0005622;comment=constituitively expressed (PMID:17188763);orthologous_to=Linfantum:LinJ.01.0820 link%3DLinJ.01.0820:pep type%3Dorthologous_to%3Bproduct%3Dhypothetical protein%2C conserved%3Bmatch_name%3DLinJ.01.0820:pep%3B rank%3D0,Tcruzi:TcCLB.511585.210 link%3DTcCLB.511585.210:pep type%3Dorthologous_to% [...]
+LmjF.01 chado gene 247550 250603 . + . ID=gene83;previous_systematic_id=LmjF01.0810
+LmjF.01 chado mRNA 247550 250603 . + . ID=mRNA83;Parent=gene83;previous_systematic_id=LmjF1.0810,LmjF01.0810:mRNA
+LmjF.01 chado CDS 247550 250603 . + 0 Parent=mRNA83;previous_systematic_id=LmjF01.0810:exon:1
+###
+LmjF.01 chado polypeptide 247550 250603 . + . Derives_from=LmjF.01.0810:mRNA;Ontology_term=GO:0016020,GO:0015269,GO:0006813;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 1-54%3B,%3Bquery 115-120%3B,%3Bquery 173-191%3B,%3Bquery 242-247%3B;membrane_structure=tmhmm%3B%3Bquery 1-1017%3B;non_cytoplasmic_polypeptide_region=%3Bquery 78-91%3B,%3Bquery 144-152%3B,%3Bquery 210-218%3B,%3Bquery 271-1017%3B;orthologous_to=Linfantum:LinJ.01.0830 link%3DLinJ. [...]
+LmjF.01 chado gene 252411 255890 . + . ID=gene84;previous_systematic_id=LmjF01.0820
+LmjF.01 chado mRNA 252411 255890 . + . ID=mRNA84;Parent=gene84;previous_systematic_id=LmjF1.0820,LmjF01.0820:mRNA
+LmjF.01 chado CDS 252411 255890 . + 0 Parent=mRNA84;previous_systematic_id=LmjF01.0820:exon:1
+###
+LmjF.01 chado polypeptide 252411 255890 . + . Derives_from=LmjF.01.0820:mRNA;gPI_anchor_cleavage_site=%3Bquery 1129-1129%3BGPI_cleavage_site_score%3D0.344;Ontology_term=GO:0016020,GO:0015269,GO:0006813,GO:0003824,GO:0008152;comment=constituitively expressed (PMID:17188763);cytoplasmic_polypeptide_region=%3Bquery 1-133%3B,%3Bquery 199-210%3B,%3Bquery 268-332%3B;membrane_structure=tmhmm%3B%3Bquery 1-1159%3B;non_cytoplasmic_polypeptide_region=%3Bquery 157-175%3B,%3Bquery 231-244%3B,%3Bquery [...]
+LmjF.01 chado gene 258831 260867 . + . ID=gene85;previous_systematic_id=LmjF01.0830
+LmjF.01 chado mRNA 258831 260867 . + . ID=mRNA85;Parent=gene85;previous_systematic_id=LmjF1.0830,LmjF01.0830:mRNA
+LmjF.01 chado CDS 258831 260867 . + 0 Parent=mRNA85;previous_systematic_id=LmjF01.0830:exon:1
+###
+LmjF.01 chado polypeptide 258831 260867 . + . Dbxref=EC:3.4.15.-;Derives_from=LmjF.01.0830:mRNA;gPI_anchor_cleavage_site=%3Bquery 645-645%3BGPI_cleavage_site_score%3D0.2924;Ontology_term=GO:0004222,GO:0006508;comment=constituitively expressed (PMID:17188763);orthologous_to=Lbraziliensis:LbrM.27.2800 link%3DLbrM.27.2800:pep type%3Dorthologous_to%2C Linfantum:LinJ.02.0710 link%3DLinJ.02.0710:pep type%3Dorthologous_to%2C Lbraziliensis:LbrM.27.2840 link%3DLbrM.27.2840:pep type%3Dorthologous_ [...]
diff --git a/debian/tests/build-lib b/debian/tests/build-lib
new file mode 100755
index 0000000..6d4bfcd
--- /dev/null
+++ b/debian/tests/build-lib
@@ -0,0 +1,22 @@
+#!/bin/sh
+# autopkgtest check: Build and run a program against libtabixpp
+# Author: Sascha Steinbiss <sascha at steinbiss.name>
+
+set -e
+
+SRC=$(pwd)/main.cpp
+DATA=$(pwd)/debian/tests/Lmajor.gff3.1
+WORKDIR=$(mktemp -d)
+trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
+cd $WORKDIR
+g++ -O2 -o tabix++2 $SRC -ltabixpp -lhts
+echo "build: OK"
+
+[ -x tabix++2 ]
+fgrep -v '###' $DATA > ./Lmajor.gff3.1
+bgzip Lmajor.gff3.1
+tabix -p gff Lmajor.gff3.1.gz
+ls
+./tabix++2 Lmajor.gff3.1.gz > 1
+ldd tabix++2
+echo "run: OK"
\ No newline at end of file
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..e67fce3
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,2 @@
+Tests: build-lib
+Depends: libtabixpp0-dev, libtabixpp0, libhts-dev, zlib1g-dev, tabix, build-essential
diff --git a/debian/tests/eden.gff3 b/debian/tests/eden.gff3
new file mode 100644
index 0000000..ba14b0a
--- /dev/null
+++ b/debian/tests/eden.gff3
@@ -0,0 +1,25 @@
+##gff-version 3
+##sequence-region ctg123 1 1497228
+ctg123 . gene 1000 9000 . + . ID=gene00001;Name=EDEN
+ctg123 . TF_binding_site 1000 1012 . + . ID=tfbs00001;Parent=gene00001
+ctg123 . mRNA 1050 9000 . + . ID=mRNA00001;Parent=gene00001;Name=EDEN.1
+ctg123 . mRNA 1050 9000 . + . ID=mRNA00002;Parent=gene00001;Name=EDEN.2
+ctg123 . mRNA 1300 9000 . + . ID=mRNA00003;Parent=gene00001;Name=EDEN.3
+ctg123 . exon 1300 1500 . + . ID=exon00001;Parent=mRNA00003
+ctg123 . exon 1050 1500 . + . ID=exon00002;Parent=mRNA00001,mRNA00002
+ctg123 . exon 3000 3902 . + . ID=exon00003;Parent=mRNA00001,mRNA00003
+ctg123 . exon 5000 5500 . + . ID=exon00004;Parent=mRNA00001,mRNA00002,mRNA00003
+ctg123 . exon 7000 9000 . + . ID=exon00005;Parent=mRNA00001,mRNA00002,mRNA00003
+ctg123 . CDS 1201 1500 . + 0 ID=cds00001;Parent=mRNA00001;Name=edenprotein.1
+ctg123 . CDS 3000 3902 . + 0 ID=cds00001;Parent=mRNA00001;Name=edenprotein.1
+ctg123 . CDS 5000 5500 . + 0 ID=cds00001;Parent=mRNA00001;Name=edenprotein.1
+ctg123 . CDS 7000 7600 . + 0 ID=cds00001;Parent=mRNA00001;Name=edenprotein.1
+ctg123 . CDS 1201 1500 . + 0 ID=cds00002;Parent=mRNA00002;Name=edenprotein.2
+ctg123 . CDS 5000 5500 . + 0 ID=cds00002;Parent=mRNA00002;Name=edenprotein.2
+ctg123 . CDS 7000 7600 . + 0 ID=cds00002;Parent=mRNA00002;Name=edenprotein.2
+ctg123 . CDS 3301 3902 . + 0 ID=cds00003;Parent=mRNA00003;Name=edenprotein.3
+ctg123 . CDS 5000 5500 . + 1 ID=cds00003;Parent=mRNA00003;Name=edenprotein.3
+ctg123 . CDS 7000 7600 . + 1 ID=cds00003;Parent=mRNA00003;Name=edenprotein.3
+ctg123 . CDS 3391 3902 . + 0 ID=cds00004;Parent=mRNA00003;Name=edenprotein.4
+ctg123 . CDS 5000 5500 . + 1 ID=cds00004;Parent=mRNA00003;Name=edenprotein.4
+ctg123 . CDS 7000 7600 . + 1 ID=cds00004;Parent=mRNA00003;Name=edenprotein.4
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/libtabixpp.git
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