[med-svn] r20756 - trunk/packages/gff2aplot/trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2015-12-13 20:24:12 +0000 (Sun, 13 Dec 2015)
New Revision: 20756

Added:
   trunk/packages/gff2aplot/trunk/debian/patches/mayhem.patch
Modified:
   trunk/packages/gff2aplot/trunk/debian/patches/series
Log:
Fix Mayhem issue


Added: trunk/packages/gff2aplot/trunk/debian/patches/mayhem.patch
===================================================================
--- trunk/packages/gff2aplot/trunk/debian/patches/mayhem.patch	                        (rev 0)
+++ trunk/packages/gff2aplot/trunk/debian/patches/mayhem.patch	2015-12-13 20:24:12 UTC (rev 20756)
@@ -0,0 +1,38 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sun, 13 Dec 2015 19:13:06 +0100
+Bug-Debian: https://bugs.debian.org/715627
+Description: Deal with Mayhem issue
+
+--- a/src/ali2gff/ali2gff.c
++++ b/src/ali2gff/ali2gff.c
+@@ -93,7 +93,7 @@ int main(int argc,  char *argv[]) {
+ 	strcpy(prgCall,argv[0]);
+ 	if (argc < 2) printUsage();
+ 	
+-	while (argv[1][0] == '-') {
++	while (argv[1] && argv[1][0] == '-') {
+ 		switch (argv[1][1]) {
+ 			case 't':
+ 				opt_t = 1;
+@@ -128,7 +128,11 @@ int main(int argc,  char *argv[]) {
+ 		argv++;	/* move the pointer to the right */
+ 	}
+ 	if (argc > 2) printUsage();
+-	strcpy(infile,argv[1]);
++	if (!argv[1]) {
++             fprintf(stderr, "Missing file name");
++             printUsage();
++        }
++	strncpy(infile,argv[1],MAXSTRING);
+ 
+ 	/*----- choose output channel ----*/
+ 	if (opt_f) {
+@@ -136,7 +140,7 @@ int main(int argc,  char *argv[]) {
+ 		fileptr = strrchr(infile,'/');
+ 		if (fileptr == NULL)
+ 		*/	
+-			strcpy(outfile,infile);
++			strncpy(outfile,infile,MAXSTRING );
+ 		/*
+ 		else strcpy(outfile,++fileptr);
+ 		*/

Modified: trunk/packages/gff2aplot/trunk/debian/patches/series
===================================================================
--- trunk/packages/gff2aplot/trunk/debian/patches/series	2015-12-13 18:17:48 UTC (rev 20755)
+++ trunk/packages/gff2aplot/trunk/debian/patches/series	2015-12-13 20:24:12 UTC (rev 20756)
@@ -1,3 +1,4 @@
 02-blat2gff.diff
 03-parseblast.diff
 use-dpkg-buildflags.patch
+mayhem.patch