[med-svn] [python-pbcore] 02/08: Imported Upstream version 1.2.7+dfsg
Afif Elghraoui
afif-guest at moszumanska.debian.org
Mon Dec 14 03:19:10 UTC 2015
This is an automated email from the git hooks/post-receive script.
afif-guest pushed a commit to branch master
in repository python-pbcore.
commit b924872e922cd14e4e901903a5c52c02caa68e46
Author: Afif Elghraoui <afif at ghraoui.name>
Date: Sun Dec 13 17:11:44 2015 -0800
Imported Upstream version 1.2.7+dfsg
---
.circleci/installHDF5.sh | 14 +
.gitignore | 13 +
CHANGELOG.org | 8 +
PKG-INFO | 69 -
circle.yml | 1 +
pbcore.egg-info/PKG-INFO | 69 -
pbcore.egg-info/SOURCES.txt | 199 --
pbcore.egg-info/dependency_links.txt | 1 -
pbcore.egg-info/entry_points.txt | 3 -
pbcore.egg-info/not-zip-safe | 1 -
pbcore.egg-info/pbr.json | 1 -
pbcore.egg-info/requires.txt | 3 -
pbcore.egg-info/top_level.txt | 1 -
pbcore/__init__.py | 2 +-
pbcore/data/empty.ccs.bam | Bin 507 -> 540 bytes
...52550000001823085912221377_s1_X0.scraps.bam.pbi | Bin 0 -> 1574 bytes
...550000001823085912221377_s1_X0.subreads.bam.bai | Bin 16 -> 0 bytes
pbcore/io/BasH5IO.py | 10 -
pbcore/io/FastaIO.py | 12 +-
pbcore/io/align/BamAlignment.py | 2 +-
pbcore/io/align/BamIO.py | 13 +-
pbcore/io/align/CmpH5IO.py | 6 +-
pbcore/io/align/PacBioBamIndex.py | 7 +-
pbcore/io/dataset/DataSetIO.py | 294 +-
pbcore/io/dataset/DataSetMembers.py | 71 +-
pbcore/io/dataset/DataSetXsd.py | 3772 ++++++++++++++------
pbcore/io/dataset/EntryPoints.py | 3 +-
pbcore/io/dataset/_pbbase.py | 1063 +++---
pbcore/io/dataset/_pbds.py | 3639 -------------------
pbcore/io/dataset/_pbmeta.py | 520 ++-
pbcore/io/dataset/_pbpn.py | 939 -----
pbcore/io/dataset/_pbrk.py | 234 +-
pbcore/io/dataset/_pbsample.py | 130 +-
pbcore/io/dataset/utils.py | 55 +-
pbcore/io/opener.py | 3 +-
requirements-dev.txt | 1 -
requirements.txt | 2 +-
setup.cfg | 6 -
setup.py | 27 +-
tests/test_pbcore_io_BasH5Reader.py | 20 +-
tests/test_pbcore_io_GffIO.py | 7 +
tests/test_pbdataset.py | 109 +-
tests/test_pbdataset_subtypes.py | 21 +-
43 files changed, 4145 insertions(+), 7206 deletions(-)
diff --git a/.circleci/installHDF5.sh b/.circleci/installHDF5.sh
new file mode 100644
index 0000000..3e7ab39
--- /dev/null
+++ b/.circleci/installHDF5.sh
@@ -0,0 +1,14 @@
+set -x
+set -e
+if [ ! -e prefix/lib/libhdf5.so ]; then
+ wget https://www.hdfgroup.org/ftp/HDF5//releases/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz
+ tar xzf hdf5-1.8.12.tar.gz
+ mkdir -p prefix
+ PREFIX=$PWD/prefix
+ cd hdf5-1.8.12
+ ./configure --prefix=$PREFIX
+ make
+ make install
+else
+ echo "HDF5 build/install already completed!"
+fi
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..94df9da
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,13 @@
+build
+dist
+doc/_build
+*~
+*.pyc
+*.egg-info
+nosetests.xml
+
+.circleci/prefix
+.circleci/hdf5-1.8.12.tar.gz
+.circleci/hdf5-1.8.12
+
+.vagrant
diff --git a/CHANGELOG.org b/CHANGELOG.org
index 96764c2..4eaeb5a 100644
--- a/CHANGELOG.org
+++ b/CHANGELOG.org
@@ -1,3 +1,11 @@
+* Current progress
+
+* Version 1.2.7...
+ - Improved IPython tab completion
+ - Can now use .open on Dataset XML files
+ - Update to pysam 0.8.4
+ - Miscellaneous bugfixes
+
* Version 1.2.6
- Recognize sequencing kit C4v2
- Support for multipart bas files with the new Sequel holenumber format
diff --git a/PKG-INFO b/PKG-INFO
deleted file mode 100644
index ff715e4..0000000
--- a/PKG-INFO
+++ /dev/null
@@ -1,69 +0,0 @@
-Metadata-Version: 1.0
-Name: pbcore
-Version: 1.2.6
-Summary: A Python library for reading and writing PacBio® data files
-Home-page: UNKNOWN
-Author: Pacific Biosciences
-Author-email: devnet at pacificbiosciences.com
-License: PacBio "BSD clear" license:
-===========================
-
-Copyright (c) 2011-2015, Pacific Biosciences of California, Inc.
-
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are
-met:
-
-* Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
-
-* Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in the
- documentation and/or other materials provided with the distribution.
-
-* Neither the name of Pacific Biosciences nor the names of its
- contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
-NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
-GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
-BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
-WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS CONTRIBUTORS
-BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
-SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
-BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
-OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
-IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-
-BioPython license (for pbcore/io/align/_bgzf.py):
-=================================================
-
- Biopython License Agreement
-
-Permission to use, copy, modify, and distribute this software and its
-documentation with or without modifications and for any purpose and
-without fee is hereby granted, provided that any copyright notices
-appear in all copies and that both those copyright notices and this
-permission notice appear in supporting documentation, and that the
-names of the contributors or copyright holders not be used in
-advertising or publicity pertaining to distribution of the software
-without specific prior permission.
-
-THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
-WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
-WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
-CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
-OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
-OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
-OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
-OR PERFORMANCE OF THIS SOFTWARE.
-
-Description: UNKNOWN
-Platform: UNKNOWN
diff --git a/circle.yml b/circle.yml
index b6275fc..21841cd 100644
--- a/circle.yml
+++ b/circle.yml
@@ -10,6 +10,7 @@ dependencies:
- .circleci/prefix
pre:
- (cd .circleci && bash installHDF5.sh)
+ - HDF5_DIR=$PWD/.circleci/prefix pip install -r requirements.txt
- HDF5_DIR=$PWD/.circleci/prefix pip install -r requirements-dev.txt
test:
diff --git a/pbcore.egg-info/PKG-INFO b/pbcore.egg-info/PKG-INFO
deleted file mode 100644
index ff715e4..0000000
--- a/pbcore.egg-info/PKG-INFO
+++ /dev/null
@@ -1,69 +0,0 @@
-Metadata-Version: 1.0
-Name: pbcore
-Version: 1.2.6
-Summary: A Python library for reading and writing PacBio® data files
-Home-page: UNKNOWN
-Author: Pacific Biosciences
-Author-email: devnet at pacificbiosciences.com
-License: PacBio "BSD clear" license:
-===========================
-
-Copyright (c) 2011-2015, Pacific Biosciences of California, Inc.
-
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are
-met:
-
-* Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
-
-* Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in the
- documentation and/or other materials provided with the distribution.
-
-* Neither the name of Pacific Biosciences nor the names of its
- contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
-NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
-GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
-BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
-WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS CONTRIBUTORS
-BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
-SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
-BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
-OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
-IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-
-BioPython license (for pbcore/io/align/_bgzf.py):
-=================================================
-
- Biopython License Agreement
-
-Permission to use, copy, modify, and distribute this software and its
-documentation with or without modifications and for any purpose and
-without fee is hereby granted, provided that any copyright notices
-appear in all copies and that both those copyright notices and this
-permission notice appear in supporting documentation, and that the
-names of the contributors or copyright holders not be used in
-advertising or publicity pertaining to distribution of the software
-without specific prior permission.
-
-THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
-WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
-WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
-CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
-OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
-OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
-OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
-OR PERFORMANCE OF THIS SOFTWARE.
-
-Description: UNKNOWN
-Platform: UNKNOWN
diff --git a/pbcore.egg-info/SOURCES.txt b/pbcore.egg-info/SOURCES.txt
deleted file mode 100644
index 914a221..0000000
--- a/pbcore.egg-info/SOURCES.txt
+++ /dev/null
@@ -1,199 +0,0 @@
-CHANGELOG.org
-LICENSES.txt
-MANIFEST.in
-Makefile
-README.md
-circle.yml
-requirements-dev.txt
-requirements.txt
-setup.cfg
-setup.py
-./pbcore/__init__.py
-./pbcore/sequence.py
-./pbcore/chemistry/__init__.py
-./pbcore/chemistry/chemistry.py
-./pbcore/chemistry/resources/mapping.xml
-./pbcore/data/1.4_bas_files.fofn
-./pbcore/data/2.0_bax_files.fofn
-./pbcore/data/2.1_bax_files.fofn
-./pbcore/data/2.1_ccs_files.fofn
-./pbcore/data/2.3_bax_files.fofn
-./pbcore/data/Fluidigm_human_amplicons.fasta
-./pbcore/data/Fluidigm_human_amplicons.fasta.fai
-./pbcore/data/Fluidigm_human_amplicons_tiny.fasta
-./pbcore/data/__init__.py
-./pbcore/data/aligned_reads_1.cmp.h5
-./pbcore/data/barcodes-ed65-450.fasta
-./pbcore/data/barcodes-ed65-450.fasta.fai
-./pbcore/data/bc_files.fofn
-./pbcore/data/blasr-output.m4
-./pbcore/data/blasr-output.m5
-./pbcore/data/empty.ccs.bam
-./pbcore/data/empty.ccs.bam.pbi
-./pbcore/data/lambdaNEB.fa
-./pbcore/data/lambdaNEB.fa.fai
-./pbcore/data/m110818_075520_42141_c100129202555500000315043109121112_s1_p0.bas.h5
-./pbcore/data/m110818_075520_42141_c100129202555500000315043109121112_s2_p0.bas.h5
-./pbcore/data/m130522_092457_42208_c100497142550000001823078008081323_s1_p0.1.bax.h5
-./pbcore/data/m130522_092457_42208_c100497142550000001823078008081323_s1_p0.2.bax.h5
-./pbcore/data/m130522_092457_42208_c100497142550000001823078008081323_s1_p0.3.bax.h5
-./pbcore/data/m130522_092457_42208_c100497142550000001823078008081323_s1_p0.bas.h5
-./pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.1.ccs.h5
-./pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam
-./pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai
-./pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.1.bax.h5
-./pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.1.rgn.h5
-./pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.2.bax.h5
-./pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.2.rgn.h5
-./pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.3.bax.h5
-./pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.3.rgn.h5
-./pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.bas.h5
-./pbcore/data/m140307_221913_42203_c100626172550000001823119008061414_s1_p0.1.bc.h5
-./pbcore/data/m140307_221913_42203_c100626172550000001823119008061414_s1_p0.2.bc.h5
-./pbcore/data/m140307_221913_42203_c100626172550000001823119008061414_s1_p0.3.bc.h5
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.1.bax.h5
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.cmp.h5
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.bai
-./pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi
-./pbcore/data/m140912_020930_00114_c100702482550000001823141103261590_s1_p0.1.bax.h5
-./pbcore/data/m140912_020930_00114_c100702482550000001823141103261590_s1_p0.2.bax.h5
-./pbcore/data/m140912_020930_00114_c100702482550000001823141103261590_s1_p0.3.bax.h5
-./pbcore/data/m140912_020930_00114_c100702482550000001823141103261590_s1_p0.bas.h5
-./pbcore/data/variants.gff
-./pbcore/data/datasets/__init__.py
-./pbcore/data/datasets/alignment.dataset.xml
-./pbcore/data/datasets/barcode.dataset.xml
-./pbcore/data/datasets/ccsaligned.dataset.xml
-./pbcore/data/datasets/ccsread.dataset.xml
-./pbcore/data/datasets/contig.dataset.xml
-./pbcore/data/datasets/fofn.fofn
-./pbcore/data/datasets/hdfsubread_dataset.xml
-./pbcore/data/datasets/lambda.alignmentset.xml
-./pbcore/data/datasets/lambda.referenceset.xml
-./pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam
-./pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai
-./pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi
-./pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml
-./pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml
-./pbcore/data/datasets/pbalchemysim.alignmentset.xml
-./pbcore/data/datasets/pbalchemysim.hdfsubreadset.xml
-./pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml
-./pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml
-./pbcore/data/datasets/pbalchemysim0.alignmentset.xml
-./pbcore/data/datasets/pbalchemysim0.bas.h5
-./pbcore/data/datasets/pbalchemysim0.hdfsubreadset.xml
-./pbcore/data/datasets/pbalchemysim0.pbalign.bam
-./pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai
-./pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi
-./pbcore/data/datasets/pbalchemysim0.reference.fasta
-./pbcore/data/datasets/pbalchemysim0.reference.fasta.fai
-./pbcore/data/datasets/pbalchemysim0.referenceset.xml
-./pbcore/data/datasets/pbalchemysim0.subreads.bam
-./pbcore/data/datasets/pbalchemysim0.subreads.bam.bai
-./pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi
-./pbcore/data/datasets/pbalchemysim0.subreadset.xml
-./pbcore/data/datasets/pbalchemysim1.alignmentset.xml
-./pbcore/data/datasets/pbalchemysim1.bas.h5
-./pbcore/data/datasets/pbalchemysim1.hdfsubreadset.xml
-./pbcore/data/datasets/pbalchemysim1.pbalign.bam
-./pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai
-./pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi
-./pbcore/data/datasets/pbalchemysim1.subreads.bam
-./pbcore/data/datasets/pbalchemysim1.subreads.bam.bai
-./pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi
-./pbcore/data/datasets/pbalchemysim1.subreadset.xml
-./pbcore/data/datasets/reference.dataset.xml
-./pbcore/data/datasets/subread.dataset.xml
-./pbcore/data/datasets/subreadSetWithStats.xml
-./pbcore/data/datasets/transformed_rs_subread.dataset.xml
-./pbcore/io/BarcodeH5Reader.py
-./pbcore/io/BasH5IO.py
-./pbcore/io/FastaIO.py
-./pbcore/io/FastqIO.py
-./pbcore/io/FofnIO.py
-./pbcore/io/GffIO.py
-./pbcore/io/__init__.py
-./pbcore/io/_utils.py
-./pbcore/io/base.py
-./pbcore/io/opener.py
-./pbcore/io/rangeQueries.py
-./pbcore/io/align/BamAlignment.py
-./pbcore/io/align/BamIO.py
-./pbcore/io/align/BlasrIO.py
-./pbcore/io/align/CmpH5IO.py
-./pbcore/io/align/PacBioBamIndex.py
-./pbcore/io/align/_AlignmentMixin.py
-./pbcore/io/align/_BamSupport.py
-./pbcore/io/align/__init__.py
-./pbcore/io/align/_bgzf.py
-./pbcore/io/dataset/DataSetIO.py
-./pbcore/io/dataset/DataSetMembers.py
-./pbcore/io/dataset/DataSetReader.py
-./pbcore/io/dataset/DataSetValidator.py
-./pbcore/io/dataset/DataSetWriter.py
-./pbcore/io/dataset/DataSetXsd.py
-./pbcore/io/dataset/EntryPoints.py
-./pbcore/io/dataset/__init__.py
-./pbcore/io/dataset/_pbbase.py
-./pbcore/io/dataset/_pbds.py
-./pbcore/io/dataset/_pbmeta.py
-./pbcore/io/dataset/_pbpn.py
-./pbcore/io/dataset/_pbrk.py
-./pbcore/io/dataset/_pbsample.py
-./pbcore/io/dataset/utils.py
-./pbcore/model/__init__.py
-./pbcore/util/Process.py
-./pbcore/util/ToolRunner.py
-./pbcore/util/__init__.py
-./pbcore/util/decorators.py
-bin/dataset.py
-bin/updateXSDs.py
-doc/Makefile
-doc/conf.py
-doc/index.rst
-doc/modules.rst
-doc/pbcore.chemistry.rst
-doc/pbcore.data.rst
-doc/pbcore.io.dataset.rst
-doc/pbcore.io.rst
-doc/pbcore.model.rst
-doc/pbcore.rst
-doc/pbcore.util.rst
-doc/pacbio-theme/theme.conf
-doc/pacbio-theme/static/headerGradient.jpg
-doc/pacbio-theme/static/pacbio.css
-doc/pacbio-theme/static/pacbioLogo.png
-doc/pacbio-theme/static/pygments.css
-pbcore.egg-info/PKG-INFO
-pbcore.egg-info/SOURCES.txt
-pbcore.egg-info/dependency_links.txt
-pbcore.egg-info/entry_points.txt
-pbcore.egg-info/not-zip-safe
-pbcore.egg-info/pbr.json
-pbcore.egg-info/requires.txt
-pbcore.egg-info/top_level.txt
-pbcore/data/Makefile
-tests/test_pbcore_data.py
-tests/test_pbcore_extract_bam_sequence.py
-tests/test_pbcore_io_AlnFileReaders.py
-tests/test_pbcore_io_BarcodeH5Reader.py
-tests/test_pbcore_io_BasH5Collection.py
-tests/test_pbcore_io_BasH5Reader.py
-tests/test_pbcore_io_BlasrIO.py
-tests/test_pbcore_io_FastaIO.py
-tests/test_pbcore_io_FastaTable.py
-tests/test_pbcore_io_FastqIO.py
-tests/test_pbcore_io_FofnIO.py
-tests/test_pbcore_io_GffIO.py
-tests/test_pbcore_io_bgzf.py
-tests/test_pbcore_io_lossless_bam.py
-tests/test_pbcore_io_rangeQueries.py
-tests/test_pbcore_io_unaligned_bam.py
-tests/test_pbcore_util_sequences.py
-tests/test_pbdataset.py
-tests/test_pbdataset_subtypes.py
\ No newline at end of file
diff --git a/pbcore.egg-info/dependency_links.txt b/pbcore.egg-info/dependency_links.txt
deleted file mode 100644
index 8b13789..0000000
--- a/pbcore.egg-info/dependency_links.txt
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/pbcore.egg-info/entry_points.txt b/pbcore.egg-info/entry_points.txt
deleted file mode 100644
index c7833fb..0000000
--- a/pbcore.egg-info/entry_points.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-[console_scripts]
-.open = pbcore.io.opener:entryPoint
-
diff --git a/pbcore.egg-info/not-zip-safe b/pbcore.egg-info/not-zip-safe
deleted file mode 100644
index 8b13789..0000000
--- a/pbcore.egg-info/not-zip-safe
+++ /dev/null
@@ -1 +0,0 @@
-
diff --git a/pbcore.egg-info/pbr.json b/pbcore.egg-info/pbr.json
deleted file mode 100644
index 16d9703..0000000
--- a/pbcore.egg-info/pbr.json
+++ /dev/null
@@ -1 +0,0 @@
-{"is_release": false, "git_version": "f0b3e78"}
\ No newline at end of file
diff --git a/pbcore.egg-info/requires.txt b/pbcore.egg-info/requires.txt
deleted file mode 100644
index d39795d..0000000
--- a/pbcore.egg-info/requires.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-h5py >= 2.0.1
-numpy >= 1.7.1
-pysam >= 0.8.1
diff --git a/pbcore.egg-info/top_level.txt b/pbcore.egg-info/top_level.txt
deleted file mode 100644
index 402b666..0000000
--- a/pbcore.egg-info/top_level.txt
+++ /dev/null
@@ -1 +0,0 @@
-pbcore
diff --git a/pbcore/__init__.py b/pbcore/__init__.py
index 238cefb..5edce9f 100644
--- a/pbcore/__init__.py
+++ b/pbcore/__init__.py
@@ -28,4 +28,4 @@
# POSSIBILITY OF SUCH DAMAGE.
#################################################################################
-__VERSION__ = "1.2.6"
+__VERSION__ = "1.2.7"
diff --git a/pbcore/data/empty.ccs.bam b/pbcore/data/empty.ccs.bam
index 3454722..e32bd25 100644
Binary files a/pbcore/data/empty.ccs.bam and b/pbcore/data/empty.ccs.bam differ
diff --git a/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi b/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi
new file mode 100644
index 0000000..4ce6212
Binary files /dev/null and b/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi differ
diff --git a/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.bai b/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.bai
deleted file mode 100644
index 79a6a43..0000000
Binary files a/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.bai and /dev/null differ
diff --git a/pbcore/io/BasH5IO.py b/pbcore/io/BasH5IO.py
index 04efd3d..86e50a3 100644
--- a/pbcore/io/BasH5IO.py
+++ b/pbcore/io/BasH5IO.py
@@ -411,16 +411,6 @@ class ZmwRead(CommonEqualityMixin):
PulseIndex = _makeQvAccessor("PulseIndex")
- def StartFrame(self):
- return self.EndFrame() - self.WidthInFrames()
-
- def EndFrame(self):
- fullPBF = arrayFromDataset(self._getBasecallsGroup()["PreBaseFrames"],
- *self._getOffsets()[self.holeNumber])
- fullWF = arrayFromDataset(self._getBasecallsGroup()["WidthInFrames"],
- *self._getOffsets()[self.holeNumber])
- return np.cumsum(fullWF + fullPBF)[self.readStart:self.readEnd]
-
class CCSZmwRead(ZmwRead):
"""
Class providing access to the CCS (circular consensus sequencing)
diff --git a/pbcore/io/FastaIO.py b/pbcore/io/FastaIO.py
index e750117..79867fc 100644
--- a/pbcore/io/FastaIO.py
+++ b/pbcore/io/FastaIO.py
@@ -48,7 +48,7 @@ from pbcore.util.decorators import deprecated
import mmap, numpy as np, re
from collections import namedtuple, OrderedDict, Sequence
-from os.path import abspath, expanduser, isfile
+from os.path import abspath, expanduser, isfile, getsize
def splitFastaHeader( name ):
@@ -416,10 +416,14 @@ class IndexedFastaReader(ReaderBase, Sequence):
def __init__(self, filename):
self.filename = abspath(expanduser(filename))
self.file = open(self.filename, "r")
- self.view = mmap.mmap(self.file.fileno(), 0,
- prot=mmap.PROT_READ)
self.faiFilename = faiFilename(self.filename)
- self.fai = loadFastaIndex(self.faiFilename, self.view)
+ if getsize(self.filename) > 0:
+ self.view = mmap.mmap(self.file.fileno(), 0,
+ prot=mmap.PROT_READ)
+ self.fai = loadFastaIndex(self.faiFilename, self.view)
+ else:
+ self.view = None
+ self.fai = []
self.contigLookup = self._loadContigLookup()
def _loadContigLookup(self):
diff --git a/pbcore/io/align/BamAlignment.py b/pbcore/io/align/BamAlignment.py
index e2269a2..2bdba22 100644
--- a/pbcore/io/align/BamAlignment.py
+++ b/pbcore/io/align/BamAlignment.py
@@ -599,7 +599,7 @@ class BamAlignment(AlignmentRecordMixin):
raise AttributeError("no such column '%s' in pbi index" % key)
def __dir__(self):
- basicDir = self.__dict__.keys()
+ basicDir = dir(self.__class__)
if self.hasPbi:
return basicDir + self.bam.pbi.columnNames
else:
diff --git a/pbcore/io/align/BamIO.py b/pbcore/io/align/BamIO.py
index 61c30d3..f731b14 100644
--- a/pbcore/io/align/BamIO.py
+++ b/pbcore/io/align/BamIO.py
@@ -32,7 +32,7 @@
__all__ = [ "BamReader", "IndexedBamReader" ]
-from pysam import Samfile
+from pysam import AlignmentFile
from pbcore.io import FastaTable
from pbcore.chemistry import decodeTriple, ChemistryLookupError
@@ -51,7 +51,7 @@ from ._AlignmentMixin import AlignmentReaderMixin, IndexedAlignmentReaderMixin
def requiresBai(method):
@wraps(method)
def f(bamReader, *args, **kwargs):
- if not bamReader.peer._hasIndex():
+ if not bamReader.peer.has_index():
raise UnavailableFeature, "this feature requires an standard BAM index file (bam.bai)"
else:
return method(bamReader, *args, **kwargs)
@@ -71,7 +71,7 @@ class _BamReaderBase(ReaderBase):
refNames = [r["SN"] for r in refRecords]
refLengths = [r["LN"] for r in refRecords]
refMD5s = [r["M5"] for r in refRecords]
- refIds = map(self.peer.gettid, refNames)
+ refIds = map(self.peer.get_tid, refNames)
nRefs = len(refRecords)
if nRefs > 0:
@@ -185,7 +185,7 @@ class _BamReaderBase(ReaderBase):
def __init__(self, fname, referenceFastaFname=None):
self.filename = fname = abspath(expanduser(fname))
- self.peer = Samfile(fname, "rb", check_sq=False)
+ self.peer = AlignmentFile(fname, "rb", check_sq=False)
self._checkFileCompatibility()
self._loadReferenceInfo()
@@ -342,7 +342,7 @@ class BamReader(_BamReaderBase, AlignmentReaderMixin):
def readsInRange(self, winId, winStart, winEnd, justIndices=False):
# PYSAM BUG: fetch doesn't work if arg 1 is tid and not rname
if not isinstance(winId, str):
- winId = self.peer.getrname(winId)
+ winId = self.peer.get_reference_name(winId)
if justIndices == True:
raise UnavailableFeature("BAM is not random-access")
else:
@@ -424,7 +424,8 @@ class IndexedBamReader(_BamReaderBase, IndexedAlignmentReaderMixin):
raise AttributeError, "no such column in pbi index"
def __dir__(self):
- return self.pbi.columnNames
+ basicDir = dir(self.__class__)
+ return basicDir + self.pbi.columnNames
@property
def identity(self):
diff --git a/pbcore/io/align/CmpH5IO.py b/pbcore/io/align/CmpH5IO.py
index 487d855..61eb81a 100755
--- a/pbcore/io/align/CmpH5IO.py
+++ b/pbcore/io/align/CmpH5IO.py
@@ -607,7 +607,8 @@ class CmpH5Alignment(AlignmentRecordMixin):
def __dir__(self):
# Special magic improving IPython completion
- return ALIGNMENT_INDEX_COLUMNS
+ basicDir = dir(self.__class__)
+ return basicDir + ALIGNMENT_INDEX_COLUMNS
class ClippedCmpH5Alignment(CmpH5Alignment):
"""
@@ -1283,4 +1284,5 @@ class CmpH5Reader(ReaderBase, IndexedAlignmentReaderMixin):
def __dir__(self):
# Special magic improving IPython completion
- return ALIGNMENT_INDEX_COLUMNS
+ basicDir = dir(self.__class__)
+ return basicDir + ALIGNMENT_INDEX_COLUMNS
diff --git a/pbcore/io/align/PacBioBamIndex.py b/pbcore/io/align/PacBioBamIndex.py
index 265f807..ea7d724 100644
--- a/pbcore/io/align/PacBioBamIndex.py
+++ b/pbcore/io/align/PacBioBamIndex.py
@@ -63,9 +63,7 @@ class PacBioBamIndex(object):
(self.magic, self.vPatch, self.vMinor,
self.vMajor, self.pbiFlags, self.nReads) = header
try:
- assert self.vMajor >= 3
- assert self.vMinor >= 0
- assert self.vPatch >= 1
+ assert (self.vMajor, self.vMinor, self.vPatch) >= (3, 0, 1)
except:
raise IncompatibleFile(
"This PBI file is incompatible with this API "
@@ -183,7 +181,8 @@ class PacBioBamIndex(object):
def __dir__(self):
# Special magic for IPython tab completion
- return self.columnNames
+ basicDir = dir(self.__class__)
+ return basicDir + self.columnNames
def __len__(self):
return len(self._tbl)
diff --git a/pbcore/io/dataset/DataSetIO.py b/pbcore/io/dataset/DataSetIO.py
index b1b3abc..d80191b 100755
--- a/pbcore/io/dataset/DataSetIO.py
+++ b/pbcore/io/dataset/DataSetIO.py
@@ -17,13 +17,11 @@ from functools import wraps
import numpy as np
from urlparse import urlparse
from pbcore.util.Process import backticks
-from pbcore.io.opener import (openAlignmentFile, openIndexedAlignmentFile,
- FastaReader, IndexedFastaReader, CmpH5Reader,
- IndexedBamReader)
from pbcore.io.align.PacBioBamIndex import PBI_FLAGS_BARCODE
from pbcore.io.FastaIO import splitFastaHeader, FastaWriter
from pbcore.io.FastqIO import FastqReader, FastqWriter, qvsFromAscii
-from pbcore.io import BaxH5Reader
+from pbcore.io import (BaxH5Reader, FastaReader, IndexedFastaReader,
+ CmpH5Reader, IndexedBamReader, BamReader)
from pbcore.io.align._BamSupport import UnavailableFeature
from pbcore.io.dataset.DataSetReader import (parseStats, populateDataSet,
resolveLocation, xmlRootType,
@@ -39,6 +37,7 @@ from pbcore.io.dataset.DataSetMembers import (DataSetMetadata,
from pbcore.io.dataset.utils import (consolidateBams, _infixFname, _pbindexBam,
_indexBam, _indexFasta)
+
log = logging.getLogger(__name__)
def filtered(generator):
@@ -138,7 +137,10 @@ def openDataFile(*files, **kwargs):
return ReferenceSet(*origFiles, **kwargs)
elif AlignmentSet in options:
# it is a bam file
- bam = openAlignmentFile(files[0])
+ if files[0].endswith('bam'):
+ bam = BamReader(files[0])
+ else:
+ bam = CmpH5Reader(files[0])
if bam.isMapped:
if bam.readType == "CCS":
return ConsensusAlignmentSet(*origFiles, **kwargs)
@@ -211,9 +213,9 @@ class DataSet(object):
Filters, and LabeledSubsets, parse inputs if possible
Args:
- *files: one or more filenames or uris to read
- strict=False: strictly require all index files
- skipCounts=False: skip updating counts for faster opening
+ :files: one or more filenames or uris to read
+ :strict=False: strictly require all index files
+ :skipCounts=False: skip updating counts for faster opening
Doctest:
>>> import os, tempfile
@@ -303,7 +305,6 @@ class DataSet(object):
# Populate required metadata
if not self.uuid:
self.newUuid()
- self.objMetadata.setdefault("Name", "")
self.objMetadata.setdefault("Tags", "")
if not baseDataSet:
dsType = self.objMetadata.setdefault("MetaType", self.datasetType)
@@ -313,6 +314,8 @@ class DataSet(object):
if not self.objMetadata.get("TimeStampedName", ""):
self.objMetadata["TimeStampedName"] = self._getTimeStampedName(
self.objMetadata["MetaType"])
+ self.objMetadata.setdefault("Name",
+ self.objMetadata["TimeStampedName"])
# Don't allow for creating datasets from inappropriate sources
# (XML files with mismatched types)
@@ -379,7 +382,7 @@ class DataSet(object):
the original datasets. (Fails if filters are incompatible).
Args:
- otherDataset: a DataSet to merge with self
+ :otherDataset: a DataSet to merge with self
Returns:
A new DataSet with members containing the union of the input
@@ -499,7 +502,7 @@ class DataSet(object):
specified, we opt to not set the newUuid when checking for equality.
Args:
- other: The other DataSet to compare to this DataSet.
+ :other: The other DataSet to compare to this DataSet.
Returns:
T/F the Core XML elements of this and the other DataSet hash to the
@@ -547,7 +550,7 @@ class DataSet(object):
copies will still be unique, despite having the same contents.
Args:
- setter=True: Setting to False allows MD5 hashes to be generated
+ :setter=True: Setting to False allows MD5 hashes to be generated
(e.g. for comparison with other objects) without
modifying the object's UniqueId
Returns:
@@ -576,7 +579,7 @@ class DataSet(object):
"""Deep copy the representation of this DataSet
Args:
- asType: The type of DataSet to return, e.g. 'AlignmentSet'
+ :asType: The type of DataSet to return, e.g. 'AlignmentSet'
Returns:
A DataSet object that is identical but for UniqueId
@@ -662,40 +665,35 @@ class DataSet(object):
roughly equal chunks of the ExternalResources or subdatasets.
Examples:
- - split into exactly n datasets where each addresses a different
- piece of the collection of contigs:
+
+ - split into exactly n datasets where each addresses a different \
+ piece of the collection of contigs::
+
dset.split(contigs=True, chunks=n)
- - split into at most n datasets where each addresses a different
- piece of the collection of contigs, but contigs are kept whole:
+ - split into at most n datasets where each addresses a different \
+ piece of the collection of contigs, but contigs are kept whole::
+
dset.split(contigs=True, maxChunks=n)
- - split into at most n datasets where each addresses a different
- piece of the collection of contigs and the number of chunks is in
- part based on the number of reads:
+ - split into at most n datasets where each addresses a different \
+ piece of the collection of contigs and the number of chunks is \
+ in part based on the number of reads::
+
dset.split(contigs=True, maxChunks=n, breakContigs=True)
Args:
- chunks: the number of chunks to split the DataSet. When chunks=0,
- create one DataSet per subdataset, or failing that
- ExternalResource
- ignoreSubDatasets: F/T (False) do not split on datasets, only split
- on ExternalResources
- contigs: (False) split on contigs instead of external resources or
- subdatasets
- maxChunks: The upper limit on the number of chunks. If chunks=0
- and breakcontigs=False, keeping contigs whole places an
- additional upper bound on the number of chunks
- breakContigs: Whether or not to break contigs when using maxChunks.
- If True, something resembling an efficient number of
- chunks for the dataset size will be produced.
- targetSize: The target number of reads per chunk, when using
- byRecords
- zmws: Split by zmws
- barcodes: Split by barcodes
- byRecords: Split contigs by mapped records, rather than reference
- length
- updateCounts: Update the count metadata in each chunk
+ :chunks: the number of chunks to split the DataSet.
+ :ignoreSubDatasets: (True) do not split on subdatasets
+ :contigs: split on contigs instead of external resources etc
+ :maxChunks: The upper limit on the number of chunks.
+ :breakContigs: Whether or not to break contigs when using maxChunks
+ :targetSize: The target number of reads per chunk
+ :zmws: Split by zmws
+ :barcodes: Split by barcodes
+ :byRecords: Split contigs by mapped records, rather than ref length
+ :updateCounts: Update the count metadata in each chunk
+
Returns:
A list of new DataSet objects (all other information deep copied).
@@ -745,6 +743,7 @@ class DataSet(object):
True
>>> ds2.totalLength == ds2tl
True
+
"""
if contigs:
return self._split_contigs(chunks, maxChunks, breakContigs,
@@ -752,7 +751,7 @@ class DataSet(object):
byRecords=byRecords,
updateCounts=updateCounts)
elif zmws:
- return self._split_zmws(chunks)
+ return self._split_zmws(chunks, targetSize=targetSize)
elif barcodes:
return self._split_barcodes(chunks)
@@ -805,7 +804,7 @@ class DataSet(object):
def _split_barcodes(self, chunks):
raise TypeError("Only ReadSets may be split by contigs")
- def _split_zmws(self, chunks):
+ def _split_zmws(self, chunks, targetSize=None):
raise TypeError("Only ReadSets may be split by ZMWs")
def _split_atoms(self, atoms, num_chunks):
@@ -853,10 +852,10 @@ class DataSet(object):
"""Write to disk as an XML file
Args:
- outFile: The filename of the xml file to be created
- validate: T/F (True) validate the ExternalResource ResourceIds
- relPaths: T/F (False) make the ExternalResource ResourceIds
- relative instead of absolute filenames
+ :outFile: The filename of the xml file to be created
+ :validate: T/F (True) validate the ExternalResource ResourceIds
+ :relPaths: T/F (False) make the ExternalResource ResourceIds
+ relative instead of absolute filenames
Doctest:
>>> import pbcore.data.datasets as data
@@ -880,12 +879,7 @@ class DataSet(object):
if pretty:
xml_string = xml.dom.minidom.parseString(xml_string).toprettyxml(
encoding="UTF-8")
- # Disable for contigsets: no support for multiple contigs in XSD
- # Disable for ccssets: no support for datasetmetadata in XSD
- if (validate and
- not self.datasetType in [ContigSet.datasetType,
- ReferenceSet.datasetType,
- ConsensusReadSet.datasetType]):
+ if validate:
validateString(xml_string, relTo=os.path.dirname(outFile))
fileName = urlparse(outFile).path.strip()
if self._strict and not isinstance(self.datasetType, tuple):
@@ -905,7 +899,7 @@ class DataSet(object):
to the DataSet XML format according to the DataSet XML XSD.
Args:
- filename: the filename of a <moviename>.sts.xml file
+ :filename: the filename of a <moviename>.sts.xml file
Doctest:
>>> import pbcore.data.datasets as data
@@ -974,7 +968,7 @@ class DataSet(object):
URIs rather than relative paths. Generally not called by API users.
Args:
- curStart: The location from which relative paths should emanate.
+ :curStart: The location from which relative paths should emanate.
"""
log.debug("Making paths absolute")
self._changePaths(
@@ -986,7 +980,7 @@ class DataSet(object):
A less common use case for API consumers.
Args:
- outDir: The location from which relative paths should originate
+ :outDir: The location from which relative paths should originate
"""
log.debug("Making paths relative")
@@ -1019,8 +1013,8 @@ class DataSet(object):
osPathFunc provided.
Args:
- osPathFunc: A function for modifying paths (e.g. os.path.abspath)
- checkMetaType: Update the metatype of externalResources if needed
+ :osPathFunc: A function for modifying paths (e.g. os.path.abspath)
+ :checkMetaType: Update the metatype of externalResources if needed
"""
# check all ExternalResources
stack = list(self.externalResources)
@@ -1097,7 +1091,7 @@ class DataSet(object):
point). Most often used by the __add__ method.
Args:
- newFilters: a Filters object or properly formatted Filters record
+ :newFilters: a Filters object or properly formatted Filters record
Doctest:
>>> import pbcore.data.datasets as data
@@ -1123,8 +1117,8 @@ class DataSet(object):
the object metadata currently in this DataSet for compatibility.
Args:
- newMetadata: The object metadata of a DataSet being considered for
- merging
+ :newMetadata: The object metadata of a DataSet being considered for
+ merging
"""
if self.objMetadata.get('Version'):
if newMetadata.get('Version') > self.objMetadata.get('Version'):
@@ -1148,11 +1142,11 @@ class DataSet(object):
directly.
Args:
- newMetadata: a dictionary of object metadata from an XML file (or
- carefully crafted to resemble one), or a wrapper
- around said dictionary
- kwargs: new metadata fields to be piled into the current metadata
- (as an attribute)
+ :newMetadata: a dictionary of object metadata from an XML file (or
+ carefully crafted to resemble one), or a wrapper
+ around said dictionary
+ :kwargs: new metadata fields to be piled into the current metadata
+ (as an attribute)
Doctest:
>>> import pbcore.data.datasets as data
@@ -1202,10 +1196,10 @@ class DataSet(object):
directly.
Args:
- newExtResources: A list of new ExternalResource objects, either
- created de novo from a raw bam input, parsed from
- an xml input, or already contained in a separate
- DataSet object and being merged.
+ :newExtResources: A list of new ExternalResource objects, either
+ created de novo from a raw bam input, parsed from
+ an xml input, or already contained in a separate
+ DataSet object and being merged.
Doctest:
>>> from pbcore.io.dataset.DataSetMembers import ExternalResource
>>> from pbcore.io import DataSet
@@ -1289,7 +1283,6 @@ class DataSet(object):
for record in resource:
yield record
- @filtered
def __iter__(self):
""" Iterate over the records. (sorted for AlignmentSet objects)"""
for record in self.records:
@@ -1303,7 +1296,6 @@ class DataSet(object):
subNames.extend(sds.name)
return subNames
- @filtered
def readsInSubDatasets(self, subNames=[]):
"""To be used in conjunction with self.subSetNames"""
if self.subdatasets:
@@ -1365,12 +1357,12 @@ class DataSet(object):
"""Return a list of resource filenames (and write to optional outfile)
Args:
- outfn: (None) the file to which the resouce filenames are to be
- written. If None, the only emission is a returned list of
- file names.
- uri: (t/F) write the resource filenames as URIs.
- relative: (t/F) emit paths relative to outfofn or '.' if no
- outfofn
+ :outfn: (None) the file to which the resouce filenames are to be
+ written. If None, the only emission is a returned list of
+ file names.
+ :uri: (t/F) write the resource filenames as URIs.
+ :relative: (t/F) emit paths relative to outfofn or '.' if no
+ outfofn
Returns:
A list of filenames or uris
@@ -1678,6 +1670,11 @@ class ReadSet(DataSet):
self.updateCounts()
@property
+ def isMapped(self):
+ responses = self._pollResources(lambda x: x.isMapped)
+ return self._unifyResponses(responses)
+
+ @property
def isIndexed(self):
if self.hasPbi:
return True
@@ -1690,7 +1687,6 @@ class ReadSet(DataSet):
if not self._unifyResponses(res):
raise RuntimeError("File not barcoded")
-
def _openFiles(self):
"""Open the files (assert they exist, assert they are of the proper
type before accessing any file)
@@ -1706,26 +1702,32 @@ class ReadSet(DataSet):
location = urlparse(extRes.resourceId).path
resource = None
try:
- resource = openIndexedAlignmentFile(
- location,
- referenceFastaFname=refFile)
+ if extRes.resourceId.endswith('bam'):
+ resource = IndexedBamReader(
+ location,
+ referenceFastaFname=refFile)
+ else:
+ resource = CmpH5Reader(location)
except (IOError, ValueError):
if not self._strict and not extRes.pbi:
log.warn("pbi file missing for {f}, operating with "
"reduced speed and functionality".format(
f=location))
- resource = openAlignmentFile(
+ resource = BamReader(
location, referenceFastaFname=refFile)
else:
raise
+ self._openReaders.append(resource)
try:
- if not resource.isEmpty:
- self._openReaders.append(resource)
+ if resource.isEmpty:
+ log.warn("{f} contains no reads!".format(
+ f=extRes.resourceId))
except UnavailableFeature: # isEmpty requires bai
- if list(itertools.islice(resource, 1)):
- self._openReaders.append(resource)
+ if not list(itertools.islice(resource, 1)):
+ log.warn("{f} contains no reads!".format(
+ f=extRes.resourceId))
if len(self._openReaders) == 0 and len(self.toExternalFiles()) != 0:
- raise IOError("No files were openable or reads found")
+ raise IOError("No files were openable")
log.debug("Done opening resources")
def _filterType(self):
@@ -1749,15 +1751,19 @@ class ReadSet(DataSet):
"""Split a readset into chunks by barcodes.
Args:
- chunks: The number of chunks to emit. If chunks < # barcodes,
- barcodes are grouped by size. If chunks == # barcodes, one
- barcode is assigned to each dataset regardless of size. If
- chunks >= # barcodes, only # barcodes chunks are emitted
+ :chunks: The number of chunks to emit. If chunks < # barcodes,
+ barcodes are grouped by size. If chunks == # barcodes, one
+ barcode is assigned to each dataset regardless of size. If
+ chunks >= # barcodes, only # barcodes chunks are emitted
"""
# Find all possible barcodes and counts for each
self.assertIndexed()
- self.assertBarcoded()
+ try:
+ self.assertBarcoded()
+ except RuntimeError:
+ log.warn("No barcodes found in BAM file, skipping split")
+ return [self.copy()]
barcodes = defaultdict(int)
for bcTuple in itertools.izip(self.index.bcForward,
self.index.bcReverse):
@@ -1799,7 +1805,7 @@ class ReadSet(DataSet):
# TODO
return results
- def _split_zmws(self, chunks):
+ def _split_zmws(self, chunks, targetSize=None):
files_to_movies = defaultdict(list)
n_bam = 0
for bam in self.resourceReaders():
@@ -1808,6 +1814,9 @@ class ReadSet(DataSet):
raise RuntimeError("Multiple read groups in single .bam")
if chunks < n_bam:
return self.split(chunks=chunks)
+ target_nchunks = self.numRecords/targetSize
+ # turn on to provide more reasonable nchunks on small datasets:
+ #chunks = min(chunks, target_nchunks)
n_chunks_per_bam = max(1, int(math.floor(float(chunks) / n_bam)))
if n_chunks_per_bam < 2:
log.warn("%d ZMW chunks requested but there are %d files" %
@@ -1967,9 +1976,9 @@ class ReadSet(DataSet):
files (min 1)
Args:
- dataFile: The name of the output file. If numFiles >1 numbers will
- be added.
- numFiles: The number of data files to be produced.
+ :dataFile: The name of the output file. If numFiles >1 numbers will
+ be added.
+ :numFiles: The number of data files to be produced.
"""
if numFiles > 1:
@@ -2024,8 +2033,8 @@ class ReadSet(DataSet):
except (IOError, UnavailableFeature):
if not self._strict:
log.debug("File problem, metadata not populated")
- self.metadata.totalLength = -1
- self.metadata.numRecords = -1
+ self.metadata.totalLength = 0
+ self.metadata.numRecords = 0
else:
raise
@@ -2093,8 +2102,8 @@ class HdfSubreadSet(ReadSet):
except (IOError, UnavailableFeature):
if not self._strict:
log.debug("File problem, metadata not populated")
- self.metadata.totalLength = -1
- self.metadata.numRecords = -1
+ self.metadata.totalLength = 0
+ self.metadata.numRecords = 0
else:
raise
@@ -2169,11 +2178,11 @@ class AlignmentSet(ReadSet):
""" An AlignmentSet
Args:
- *files: handled by super
- referenceFastaFname=None: the reference fasta filename for this
- alignment.
- strict=False: see base class
- skipCounts=False: see base class
+ :files: handled by super
+ :referenceFastaFname=None: the reference fasta filename for this \
+ alignment.
+ :strict=False: see base class
+ :skipCounts=False: see base class
"""
log.debug("Opening AlignmentSet with {f}".format(f=files))
super(AlignmentSet, self).__init__(*files, **kwargs)
@@ -2272,8 +2281,8 @@ class AlignmentSet(ReadSet):
in this DataSet.
Args:
- refName: Only yield open resources if they have refName in their
- referenceInfoTable
+ :refName: Only yield open resources if they have refName in their
+ referenceInfoTable
Yields:
An open indexed alignment file
@@ -2399,14 +2408,13 @@ class AlignmentSet(ReadSet):
else:
return len(self.index)
- @filtered
def readsInReference(self, refName):
"""A generator of (usually) BamAlignment objects for the
reads in one or more Bam files pointed to by the ExternalResources in
this DataSet that are mapped to the specified reference genome.
Args:
- refName: the name of the reference that we are sampling.
+ :refName: the name of the reference that we are sampling.
Yields:
BamAlignment objects
@@ -2518,11 +2526,11 @@ class AlignmentSet(ReadSet):
"""Split a dataset into reference windows based on contigs.
Args:
- chunks: The number of chunks to emit. If chunks < # contigs,
- contigs are grouped by size. If chunks == contigs, one
- contig is assigned to each dataset regardless of size. If
- chunks >= contigs, contigs are split into roughly equal
- chunks (<= 1.0 contig per file).
+ :chunks: The number of chunks to emit. If chunks < # contigs,
+ contigs are grouped by size. If chunks == contigs, one
+ contig is assigned to each dataset regardless of size. If
+ chunks >= contigs, contigs are split into roughly equal
+ chunks (<= 1.0 contig per file).
"""
# removed the non-trivial case so that it is still filtered to just
@@ -2727,10 +2735,10 @@ class AlignmentSet(ReadSet):
window, and yield in that order (much much faster for quiver)
Args:
- refName: The reference name to sample
- start: The start of the target window
- end: The end of the target window
- longest: (False) yield the longest reads first
+ :refName: The reference name to sample
+ :start: The start of the target window
+ :end: The end of the target window
+ :longest: (False) yield the longest reads first
Yields:
reads in the range, potentially longest first
@@ -2777,8 +2785,8 @@ class AlignmentSet(ReadSet):
"""Get the records corresponding to indexList
Args:
- indexList: A list of (reader, read) index tuples
- buffsize: The number of reads to buffer (coalesced file reads)
+ :indexList: A list of (reader, read) index tuples
+ :buffsize: The number of reads to buffer (coalesced file reads)
Yields:
reads from all files
@@ -2846,7 +2854,6 @@ class AlignmentSet(ReadSet):
refName = self._idToRname(int(refName))
return refName
- @filtered
def readsInRange(self, refName, start, end, buffsize=50, usePbi=True,
longest=False, sampleSize=0, justIndices=False):
"""A generator of (usually) BamAlignment objects for the reads in one
@@ -2859,10 +2866,10 @@ class AlignmentSet(ReadSet):
should allow users to compose the desired query.
Args:
- refName: the name of the reference that we are sampling
- start: the start of the range (inclusive, index relative to
- reference)
- end: the end of the range (inclusive, index relative to reference)
+ :refName: the name of the reference that we are sampling
+ :start: the start of the range (inclusive, index relative to \
+ reference)
+ :end: the end of the range (inclusive, index relative to reference)
Yields:
BamAlignment objects
@@ -2874,6 +2881,7 @@ class AlignmentSet(ReadSet):
>>> for read in ds.readsInRange(ds.refNames[15], 100, 150):
... print 'hn: %i' % read.holeNumber # doctest:+ELLIPSIS
hn: ...
+
"""
refName = self.guaranteeName(refName)
@@ -3007,7 +3015,17 @@ class AlignmentSet(ReadSet):
if self.isCmpH5:
length = sum(self.index.rEnd - self.index.rStart)
else:
- length = sum(self.index.aEnd - self.index.aStart)
+ try:
+ length = sum(self.index.aEnd - self.index.aStart)
+ except AttributeError:
+ # If the bam is empty or the file is not actually aligned, this
+ # field wont be populated
+ if self.isMapped:
+ log.warn(".pbi mapping columns missing from mapped bam, "
+ "bam may be empty")
+ else:
+ log.warn("File not actually mapped!")
+ length = 0
return count, length
@property
@@ -3133,7 +3151,7 @@ class AlignmentSet(ReadSet):
ExtResources.
Args:
- key: a key for the referenceInfoTable of each resource
+ :key: a key for the referenceInfoTable of each resource
Returns:
A list of tuples of refrence name, key_result pairs
@@ -3153,7 +3171,7 @@ class AlignmentSet(ReadSet):
reference identifier: referenceInfoTable.Name
Args:
- rId: The DataSet.referenceInfoTable.ID of interest
+ :rId: The DataSet.referenceInfoTable.ID of interest
Returns:
The referenceInfoTable.Name corresponding to rId
@@ -3396,8 +3414,10 @@ class ContigSet(DataSet):
def updateCounts(self):
if self._skipCounts:
- self.metadata.totalLength = -1
- self.metadata.numRecords = -1
+ if not self.metadata.totalLength:
+ self.metadata.totalLength = -1
+ if not self.metadata.numRecords:
+ self.metadata.numRecords = -1
return
try:
log.debug('Updating counts')
@@ -3466,6 +3486,7 @@ class ContigSet(DataSet):
self._fastq = True
self._openReaders.append(FastqReader(location))
continue
+ resource = None
try:
resource = IndexedFastaReader(location)
except IOError:
@@ -3476,9 +3497,18 @@ class ContigSet(DataSet):
resource = FastaReader(location)
else:
raise
- self._openReaders.append(resource)
+ except ValueError:
+ log.warn("Fasta file is empty")
+ # this seems to work for an emtpy fasta, interesting:
+ resource = FastaReader(location)
+ # we know this file is empty
+ self._skipCounts = True
+ self.metadata.totalLength = 0
+ self.metadata.numRecords = 0
+ if resource is not None:
+ self._openReaders.append(resource)
if len(self._openReaders) == 0 and len(self.toExternalFiles()) != 0:
- raise IOError("No files were openable or reads found")
+ raise IOError("No files were openable")
log.debug("Done opening resources")
def resourceReaders(self, refName=None):
diff --git a/pbcore/io/dataset/DataSetMembers.py b/pbcore/io/dataset/DataSetMembers.py
index 2490c29..6e3837c 100755
--- a/pbcore/io/dataset/DataSetMembers.py
+++ b/pbcore/io/dataset/DataSetMembers.py
@@ -4,46 +4,51 @@ efficiently. Here, we maintain a bulk representation of all of the dataset
metadata (or any other XML data, like ExternalResources) found in the XML file
in the following data structure:
- An Element is a turned into a dictionary:
- XmlElement => {'tag': 'ElementTag',
- 'text': 'ElementText',
- 'attrib': {'ElementAttributeName': 'AttributeValue',
+| An Element is a turned into a dictionary:
+| XmlElement => {'tag': 'ElementTag',
+| 'text': 'ElementText',
+| 'attrib': {'ElementAttributeName': 'AttributeValue',
'AnotherAttrName': 'AnotherAttrValue'},
- 'children': [XmlElementDict,
+| 'children': [XmlElementDict,
XmlElementDictWithSameOrDifferentTag]}
- Child elements are represented similarly and stored (recursively) as a list
- in 'children'. The top level we store for DataSetMetadata is just a list,
- which can be thought of as the list of children of a different element
- (say, a DataSet or SubreadSet element, if we stored that):
- DataSetMetadata = [XmlTag, XmlTagWithSameOrDifferentTag]
-
-We keep this for two reasons:
- 1. We don't want to have to write a lot of logic to go from XML to an
- internal representation and then back to XML.
- 2. We want to be able to store and at least write metadata that doesn't yet
- exist, even if we can't merge it intelligently.
- 3. Keeping and manipulating a dictionary is ~10x faster than an
- OrderedAttrDict, and probably faster to use than a full stack of
- objects.
+Child elements are represented similarly and stored (recursively) as a list
+in 'children'. The top level we store for DataSetMetadata is just a list,
+which can be thought of as the list of children of a different element
+(say, a DataSet or SubreadSet element, if we stored that):
+
+- DataSetMetadata = [XmlTag, XmlTagWithSameOrDifferentTag]
+
+We keep this for three reasons:
+
+1. We don't want to have to write a lot of logic to go from XML to an \
+internal representation and then back to XML.
+
+2. We want to be able to store and at least write metadata that doesn't yet \
+exist, even if we can't merge it intelligently.
+
+3. Keeping and manipulating a dictionary is ~10x faster than an \
+OrderedAttrDict, and probably faster to use than a full stack of \
+objects.
Instead, we keep and modify this list:dictionary structure, wrapping it in
classes as necessary. The classes and methods that wrap this datastructure
serve two pruposes:
- 1. Provide an interface for our code (and making merging clean) e.g.:
- - DataSet("test.xml").metadata.numRecords += 1
- 2. Provide an interface for users of the DataSet API, e.g.:
- - numRecords = DataSet("test.xml").metadata.numRecords
- - bioSamplePointer = (DataSet("test.xml")
- .metadata.collections[0]
- .wellSample.bioSamplePointers[0])
- a. Though users can still access novel metadata types the hard way
- e.g.:
- - bioSamplePointer = (DataSet("test.xml")
- .metadata.collections[0]
- ['WellSample']['BioSamplePointers']
- ['BioSamplePointer'].record['text'])
- note: Assuming __getitem__ is implemented for the 'children' list
+
+- Provide an interface for our code (and making merging clean) e.g.:
+ - DataSet("test.xml").metadata.numRecords += 1
+
+- Provide an interface for users of the DataSet API, e.g.:
+ - numRecords = DataSet("test.xml").metadata.numRecords
+ - bioSamplePointer = (DataSet("test.xml")\
+ .metadata.collections[0]\
+ .wellSample.bioSamplePointers[0])
+ - Though users can still access novel metadata types the hard way e.g.:
+ - bioSamplePointer = (DataSet("test.xml")\
+ .metadata.collections[0]\
+ ['WellSample']['BioSamplePointers']\
+ ['BioSamplePointer'].record['text'])
+
"""
#import hashlib
diff --git a/pbcore/io/dataset/DataSetXsd.py b/pbcore/io/dataset/DataSetXsd.py
old mode 100755
new mode 100644
index 5bde378..a22566b
--- a/pbcore/io/dataset/DataSetXsd.py
+++ b/pbcore/io/dataset/DataSetXsd.py
@@ -1,8 +1,8 @@
-# ./DataSetXsd.py
+# ./xsdupdate/DataSetXsd.py
# -*- coding: utf-8 -*-
-# PyXB bindings for NM:3c1eccef1b156ac43379b476cb78e3eecd9f5c97
-# Generated 2015-10-20 16:53:48.813538 by PyXB version 1.2.4 using Python 2.7.6.final.0
-# Namespace http://pacificbiosciences.com/PacBioDataModel.xsd
+# PyXB bindings for NM:3dc5b3a98cc462befd746fd05a18986be8ba2691
+# Generated 2015-12-08 13:20:39.148321 by PyXB version 1.2.4 using Python 2.7.6.final.0
+# Namespace http://pacificbiosciences.com/PacBioDatasets.xsd
from __future__ import unicode_literals
import pyxb
@@ -15,7 +15,7 @@ import sys
import pyxb.utils.six as _six
# Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:ce6bf488-7785-11e5-9f1f-001a4acb6b14')
+_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:8749368c-9df1-11e5-86b0-001a4acb6b14')
# Version of PyXB used to generate the bindings
_PyXBVersion = '1.2.4'
@@ -24,20 +24,18 @@ if pyxb.__version__ != _PyXBVersion:
raise pyxb.PyXBVersionError(_PyXBVersion)
# Import bindings for namespaces imported into schema
-import _pbrk as _ImportedBinding__pbrk
-import _pbsample as _ImportedBinding__pbsample
import pyxb.binding.datatypes
-import _pbds as _ImportedBinding__pbds
+import _pbsample as _ImportedBinding__pbsample
+import _pbmeta as _ImportedBinding__pbmeta
import _pbbase as _ImportedBinding__pbbase
-import _pbpn as _ImportedBinding__pbpn
# NOTE: All namespace declarations are reserved within the binding
-Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioDataModel.xsd', create_if_missing=True)
+Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioDatasets.xsd', create_if_missing=True)
Namespace.configureCategories(['typeBinding', 'elementBinding'])
-_Namespace_pbpn = _ImportedBinding__pbpn.Namespace
-_Namespace_pbpn.configureCategories(['typeBinding', 'elementBinding'])
-_Namespace_pbds = _ImportedBinding__pbds.Namespace
-_Namespace_pbds.configureCategories(['typeBinding', 'elementBinding'])
+_Namespace_pbmeta = _ImportedBinding__pbmeta.Namespace
+_Namespace_pbmeta.configureCategories(['typeBinding', 'elementBinding'])
+_Namespace_pbsample = _ImportedBinding__pbsample.Namespace
+_Namespace_pbsample.configureCategories(['typeBinding', 'elementBinding'])
_Namespace_pbbase = _ImportedBinding__pbbase.Namespace
_Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding'])
@@ -90,273 +88,187 @@ class STD_ANON (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mi
"""An atomic simple type."""
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 75, 4)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 202, 6)
_Documentation = None
STD_ANON._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON, enum_prefix=None)
-STD_ANON.AverageReadLength = STD_ANON._CF_enumeration.addEnumeration(unicode_value='AverageReadLength', tag='AverageReadLength')
-STD_ANON.AcquisitionTime = STD_ANON._CF_enumeration.addEnumeration(unicode_value='AcquisitionTime', tag='AcquisitionTime')
-STD_ANON.InsertSize = STD_ANON._CF_enumeration.addEnumeration(unicode_value='InsertSize', tag='InsertSize')
-STD_ANON.ReuseComplex = STD_ANON._CF_enumeration.addEnumeration(unicode_value='ReuseComplex', tag='ReuseComplex')
-STD_ANON.StageHS = STD_ANON._CF_enumeration.addEnumeration(unicode_value='StageHS', tag='StageHS')
-STD_ANON.JobId = STD_ANON._CF_enumeration.addEnumeration(unicode_value='JobId', tag='JobId')
-STD_ANON.JobName = STD_ANON._CF_enumeration.addEnumeration(unicode_value='JobName', tag='JobName')
-STD_ANON.NumberOfCollections = STD_ANON._CF_enumeration.addEnumeration(unicode_value='NumberOfCollections', tag='NumberOfCollections')
-STD_ANON.StrobeByTime = STD_ANON._CF_enumeration.addEnumeration(unicode_value='StrobeByTime', tag='StrobeByTime')
-STD_ANON.UsedControl = STD_ANON._CF_enumeration.addEnumeration(unicode_value='UsedControl', tag='UsedControl')
-STD_ANON.Use2ndLook = STD_ANON._CF_enumeration.addEnumeration(unicode_value='Use2ndLook', tag='Use2ndLook')
+STD_ANON.Instrument = STD_ANON._CF_enumeration.addEnumeration(unicode_value='Instrument', tag='Instrument')
+STD_ANON.User = STD_ANON._CF_enumeration.addEnumeration(unicode_value='User', tag='User')
+STD_ANON.AnalysisJob = STD_ANON._CF_enumeration.addEnumeration(unicode_value='AnalysisJob', tag='AnalysisJob')
STD_ANON._InitializeFacetMap(STD_ANON._CF_enumeration)
-# Atomic simple type: [anonymous]
-class STD_ANON_ (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin):
-
- """An atomic simple type."""
-
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 185, 4)
- _Documentation = None
-STD_ANON_._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON_, enum_prefix=None)
-STD_ANON_.PlateId = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='PlateId', tag='PlateId')
-STD_ANON_.PlateDefinition = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='PlateDefinition', tag='PlateDefinition')
-STD_ANON_.SchemaVersion = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='SchemaVersion', tag='SchemaVersion')
-STD_ANON_.DefType = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='DefType', tag='DefType')
-STD_ANON_.Owner = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Owner', tag='Owner')
-STD_ANON_.CreatedBy = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='CreatedBy', tag='CreatedBy')
-STD_ANON_.Comments = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Comments', tag='Comments')
-STD_ANON_.OutputPath = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='OutputPath', tag='OutputPath')
-STD_ANON_.Collections = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Collections', tag='Collections')
-STD_ANON_.Collection = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Collection', tag='Collection')
-STD_ANON_.DNATemplatePrepKitDefinition = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='DNATemplatePrepKitDefinition', tag='DNATemplatePrepKitDefinition')
-STD_ANON_.BindingKitDefinition = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='BindingKitDefinition', tag='BindingKitDefinition')
-STD_ANON_.RunResources = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='RunResources', tag='RunResources')
-STD_ANON_.CompatibleChipLayouts = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='CompatibleChipLayouts', tag='CompatibleChipLayouts')
-STD_ANON_.ChipLayout = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='ChipLayout', tag='ChipLayout')
-STD_ANON_.CompatibleSequencingKits = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='CompatibleSequencingKits', tag='CompatibleSequencingKits')
-STD_ANON_.SequencingKit = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='SequencingKit', tag='SequencingKit')
-STD_ANON_.RequiredTips = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='RequiredTips', tag='RequiredTips')
-STD_ANON_.EstimatedTotalRunTime = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='EstimatedTotalRunTime', tag='EstimatedTotalRunTime')
-STD_ANON_.RequiredSMRTCells = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='RequiredSMRTCells', tag='RequiredSMRTCells')
-STD_ANON_.CollectionAutomation = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='CollectionAutomation', tag='CollectionAutomation')
-STD_ANON_.Basecaller = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Basecaller', tag='Basecaller')
-STD_ANON_.SecondaryAnalysisAutomation = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='SecondaryAnalysisAutomation', tag='SecondaryAnalysisAutomation')
-STD_ANON_.WellNo = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='WellNo', tag='WellNo')
-STD_ANON_.SampleName = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='SampleName', tag='SampleName')
-STD_ANON_.Barcode = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Barcode', tag='Barcode')
-STD_ANON_.AcquisitionTime = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='AcquisitionTime', tag='AcquisitionTime')
-STD_ANON_.InsertSize = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='InsertSize', tag='InsertSize')
-STD_ANON_.ReuseComplex = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='ReuseComplex', tag='ReuseComplex')
-STD_ANON_.StageHS = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='StageHS', tag='StageHS')
-STD_ANON_.NumberOfCollections = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='NumberOfCollections', tag='NumberOfCollections')
-STD_ANON_.Confidence = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Confidence', tag='Confidence')
-STD_ANON_.SampleComment = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='SampleComment', tag='SampleComment')
-STD_ANON_.StrobeByTime = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='StrobeByTime', tag='StrobeByTime')
-STD_ANON_._InitializeFacetMap(STD_ANON_._CF_enumeration)
-
-# Atomic simple type: [anonymous]
-class STD_ANON_2 (pyxb.binding.datatypes.dateTime):
-
- """An atomic simple type."""
-
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 398, 5)
- _Documentation = None
-STD_ANON_2._InitializeFacetMap()
-
# Complex type [anonymous] with content type ELEMENT_ONLY
class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
- """Part of the RunResources; specifies a ChipLayout which is compatible with the collection protocols defined on the plate"""
+ """Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 15, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 115, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Validation uses Python identifier Validation
- __Validation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Validation'), 'Validation', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_httppacificbiosciences_comPacBioDataModel_xsdValidation', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1), )
-
-
- Validation = property(__Validation.value, __Validation.set, None, '\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ')
-
-
- # Attribute Name uses Python identifier Name
- __Name = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Name'), 'Name', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_Name', pyxb.binding.datatypes.string, required=True)
- __Name._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 19, 3)
- __Name._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 19, 3)
-
- Name = property(__Name.value, __Name.set, None, None)
-
-
- # Attribute PartNumber uses Python identifier PartNumber
- __PartNumber = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartNumber'), 'PartNumber', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_PartNumber', pyxb.binding.datatypes.string, required=True)
- __PartNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 20, 3)
- __PartNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 20, 3)
-
- PartNumber = property(__PartNumber.value, __PartNumber.set, None, None)
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Subset uses Python identifier Subset
+ __Subset = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Subset'), 'Subset', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_httppacificbiosciences_comPacBioDatasets_xsdSubset', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 117, 4), )
- # Attribute Quantity uses Python identifier Quantity
- __Quantity = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Quantity'), 'Quantity', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_Quantity', pyxb.binding.datatypes.anySimpleType)
- __Quantity._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 21, 3)
- __Quantity._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 21, 3)
-
- Quantity = property(__Quantity.value, __Quantity.set, None, 'The number of cells required, of a particular part number')
+ Subset = property(__Subset.value, __Subset.set, None, None)
_ElementMap.update({
- __Validation.name() : __Validation
+ __Subset.name() : __Subset
})
_AttributeMap.update({
- __Name.name() : __Name,
- __PartNumber.name() : __PartNumber,
- __Quantity.name() : __Quantity
+
})
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
- """A set of Chip Layouts deemed compatible with the current plate"""
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType with content type ELEMENT_ONLY
+class DataSetMetadataType (pyxb.binding.basis.complexTypeDefinition):
+ """Extend this type to provide DataSetMetadata element in each DataSet."""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 32, 2)
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadataType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 186, 1)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}ChipLayout uses Python identifier ChipLayout
- __ChipLayout = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), 'ChipLayout', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON__httppacificbiosciences_comPacBioDataModel_xsdChipLayout', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 11, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength uses Python identifier TotalLength
+ __TotalLength = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TotalLength'), 'TotalLength', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdTotalLength', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 191, 3), )
+
+
+ TotalLength = property(__TotalLength.value, __TotalLength.set, None, None)
- ChipLayout = property(__ChipLayout.value, __ChipLayout.set, None, 'Part of the RunResources; specifies a ChipLayout which is compatible with the collection protocols defined on the plate')
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords uses Python identifier NumRecords
+ __NumRecords = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumRecords'), 'NumRecords', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdNumRecords', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 192, 3), )
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Validation uses Python identifier Validation
- __Validation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Validation'), 'Validation', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON__httppacificbiosciences_comPacBioDataModel_xsdValidation', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1), )
+ NumRecords = property(__NumRecords.value, __NumRecords.set, None, None)
- Validation = property(__Validation.value, __Validation.set, None, '\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ')
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance uses Python identifier Provenance
+ __Provenance = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Provenance'), 'Provenance', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdProvenance', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3), )
+
+
+ Provenance = property(__Provenance.value, __Provenance.set, None, None)
_ElementMap.update({
- __ChipLayout.name() : __ChipLayout,
- __Validation.name() : __Validation
+ __TotalLength.name() : __TotalLength,
+ __NumRecords.name() : __NumRecords,
+ __Provenance.name() : __Provenance
})
_AttributeMap.update({
})
+Namespace.addCategoryObject('typeBinding', 'DataSetMetadataType', DataSetMetadataType)
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
- """A set of reagent kits deemed compatible with the current plate"""
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetRootType with content type ELEMENT_ONLY
+class DataSetRootType (pyxb.binding.basis.complexTypeDefinition):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetRootType with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 43, 2)
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetRootType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 214, 1)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}EstimatedTotalRunTime uses Python identifier EstimatedTotalRunTime
- __EstimatedTotalRunTime = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'EstimatedTotalRunTime'), 'EstimatedTotalRunTime', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioDataModel_xsdEstimatedTotalRunTime', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 51, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSet uses Python identifier AlignmentSet
+ __AlignmentSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), 'AlignmentSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdAlignmentSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 8, 1), )
- EstimatedTotalRunTime = property(__EstimatedTotalRunTime.value, __EstimatedTotalRunTime.set, None, 'The total amount of time the run is estimated to require. A confidence value (defaulted to 90%) indicates the degree of certainty associated with the estimate')
+ AlignmentSet = property(__AlignmentSet.value, __AlignmentSet.set, None, 'DataSets for aligned subreads and CCS reads.')
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}RequiredTips uses Python identifier RequiredTips
- __RequiredTips = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RequiredTips'), 'RequiredTips', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioDataModel_xsdRequiredTips', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 120, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSet uses Python identifier BarcodeSet
+ __BarcodeSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), 'BarcodeSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdBarcodeSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 18, 1), )
- RequiredTips = property(__RequiredTips.value, __RequiredTips.set, None, 'Part of the RunResources; specifies the required number of tips via two attributes, Left and Right')
+ BarcodeSet = property(__BarcodeSet.value, __BarcodeSet.set, None, 'DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.')
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}SequencingKit uses Python identifier SequencingKit
- __SequencingKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbpn, 'SequencingKit'), 'SequencingKit', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioPartNumbers_xsdSequencingKit', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioPartNumbers.xsd', 14, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ConsensusAlignmentSet uses Python identifier ConsensusAlignmentSet
+ __ConsensusAlignmentSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), 'ConsensusAlignmentSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdConsensusAlignmentSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 28, 1), )
- SequencingKit = property(__SequencingKit.value, __SequencingKit.set, None, None)
+ ConsensusAlignmentSet = property(__ConsensusAlignmentSet.value, __ConsensusAlignmentSet.set, None, 'DataSets of aligned CCS reads.')
- _ElementMap.update({
- __EstimatedTotalRunTime.name() : __EstimatedTotalRunTime,
- __RequiredTips.name() : __RequiredTips,
- __SequencingKit.name() : __SequencingKit
- })
- _AttributeMap.update({
-
- })
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ConsensusReadSet uses Python identifier ConsensusReadSet
+ __ConsensusReadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), 'ConsensusReadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdConsensusReadSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 38, 1), )
+
+ ConsensusReadSet = property(__ConsensusReadSet.value, __ConsensusReadSet.set, None, 'DataSets of CCS reads (typically in unaligned BAM format).')
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSet uses Python identifier ContigSet
+ __ContigSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), 'ContigSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdContigSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 75, 1), )
+
+
+ ContigSet = property(__ContigSet.value, __ContigSet.set, None, 'DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).')
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition):
- """The total amount of time the run is estimated to require. A confidence value (defaulted to 90%) indicates the degree of certainty associated with the estimate"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 55, 2)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Validation uses Python identifier Validation
- __Validation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Validation'), 'Validation', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDataModel_xsdValidation', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}HdfSubreadSet uses Python identifier HdfSubreadSet
+ __HdfSubreadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), 'HdfSubreadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdHdfSubreadSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 87, 1), )
- Validation = property(__Validation.value, __Validation.set, None, '\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ')
+ HdfSubreadSet = property(__HdfSubreadSet.value, __HdfSubreadSet.set, None, 'DataSets of subreads in bax.h5 or bas.h5 format.')
- # Attribute Value uses Python identifier Value
- __Value = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Value'), 'Value', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_3_Value', pyxb.binding.datatypes.string, required=True)
- __Value._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 59, 3)
- __Value._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 59, 3)
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReferenceSet uses Python identifier ReferenceSet
+ __ReferenceSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), 'ReferenceSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdReferenceSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 97, 1), )
+
- Value = property(__Value.value, __Value.set, None, None)
+ ReferenceSet = property(__ReferenceSet.value, __ReferenceSet.set, None, 'DataSets of reference sequences. Replaces the reference.info.xml.')
- # Attribute Confidence uses Python identifier Confidence
- __Confidence = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Confidence'), 'Confidence', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_3_Confidence', pyxb.binding.datatypes.int, required=True)
- __Confidence._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 60, 3)
- __Confidence._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 60, 3)
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSet uses Python identifier SubreadSet
+ __SubreadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), 'SubreadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdSubreadSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 107, 1), )
+
- Confidence = property(__Confidence.value, __Confidence.set, None, None)
+ SubreadSet = property(__SubreadSet.value, __SubreadSet.set, None, None)
_ElementMap.update({
- __Validation.name() : __Validation
+ __AlignmentSet.name() : __AlignmentSet,
+ __BarcodeSet.name() : __BarcodeSet,
+ __ConsensusAlignmentSet.name() : __ConsensusAlignmentSet,
+ __ConsensusReadSet.name() : __ConsensusReadSet,
+ __ContigSet.name() : __ContigSet,
+ __HdfSubreadSet.name() : __HdfSubreadSet,
+ __ReferenceSet.name() : __ReferenceSet,
+ __SubreadSet.name() : __SubreadSet
})
_AttributeMap.update({
- __Value.name() : __Value,
- __Confidence.name() : __Confidence
+
})
-
+Namespace.addCategoryObject('typeBinding', 'DataSetRootType', DataSetRootType)
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition):
- """PacBio Data Model root element"""
+class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
+ """The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters."""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 98, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 235, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}ExperimentContainer uses Python identifier ExperimentContainer
- __ExperimentContainer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExperimentContainer'), 'ExperimentContainer', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioDataModel_xsdExperimentContainer', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 100, 4), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filter uses Python identifier Filter
+ __Filter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filter'), 'Filter', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON__httppacificbiosciences_comPacBioDatasets_xsdFilter', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 237, 8), )
- ExperimentContainer = property(__ExperimentContainer.value, __ExperimentContainer.set, None, None)
+ Filter = property(__Filter.value, __Filter.set, None, None)
- _HasWildcardElement = True
_ElementMap.update({
- __ExperimentContainer.name() : __ExperimentContainer
+ __Filter.name() : __Filter
})
_AttributeMap.update({
@@ -365,182 +277,140 @@ class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition):
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition):
- """Part of the RunResources; specifies the required number of SMRT cells"""
+class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
+ """Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 113, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 242, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Validation uses Python identifier Validation
- __Validation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Validation'), 'Validation', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDataModel_xsdValidation', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1), )
-
-
- Validation = property(__Validation.value, __Validation.set, None, '\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ')
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSet uses Python identifier DataSet
+ __DataSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), 'DataSet', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioDatasets_xsdDataSet', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 85, 1), )
- # Attribute Quantity uses Python identifier Quantity
- __Quantity = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Quantity'), 'Quantity', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_5_Quantity', pyxb.binding.datatypes.int, required=True)
- __Quantity._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 117, 3)
- __Quantity._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 117, 3)
-
- Quantity = property(__Quantity.value, __Quantity.set, None, None)
+ DataSet = property(__DataSet.value, __DataSet.set, None, None)
_ElementMap.update({
- __Validation.name() : __Validation
+ __DataSet.name() : __DataSet
})
_AttributeMap.update({
- __Quantity.name() : __Quantity
+
})
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_6 (pyxb.binding.basis.complexTypeDefinition):
- """Part of the RunResources; specifies the required number of tips via two attributes, Left and Right"""
+class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition):
+ """Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 124, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 259, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Validation uses Python identifier Validation
- __Validation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Validation'), 'Validation', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioDataModel_xsdValidation', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AdapterDimerFraction uses Python identifier AdapterDimerFraction
+ __AdapterDimerFraction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction'), 'AdapterDimerFraction', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdAdapterDimerFraction', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 261, 8), )
- Validation = property(__Validation.value, __Validation.set, None, '\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ')
+ AdapterDimerFraction = property(__AdapterDimerFraction.value, __AdapterDimerFraction.set, None, None)
- # Attribute Left uses Python identifier Left
- __Left = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Left'), 'Left', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_6_Left', pyxb.binding.datatypes.int, required=True)
- __Left._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 128, 3)
- __Left._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 128, 3)
-
- Left = property(__Left.value, __Left.set, None, None)
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ShortInsertFraction uses Python identifier ShortInsertFraction
+ __ShortInsertFraction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction'), 'ShortInsertFraction', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdShortInsertFraction', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 262, 8), )
- # Attribute Right uses Python identifier Right
- __Right = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Right'), 'Right', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_6_Right', pyxb.binding.datatypes.int, required=True)
- __Right._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 129, 3)
- __Right._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 129, 3)
-
- Right = property(__Right.value, __Right.set, None, None)
-
- _ElementMap.update({
- __Validation.name() : __Validation
- })
- _AttributeMap.update({
- __Left.name() : __Left,
- __Right.name() : __Right
- })
+ ShortInsertFraction = property(__ShortInsertFraction.value, __ShortInsertFraction.set, None, None)
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}NumSequencingZmws uses Python identifier NumSequencingZmws
+ __NumSequencingZmws = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws'), 'NumSequencingZmws', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdNumSequencingZmws', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 263, 8), )
+
+ NumSequencingZmws = property(__NumSequencingZmws.value, __NumSequencingZmws.set, None, None)
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_7 (pyxb.binding.basis.complexTypeDefinition):
- """This is an output field specifying the requirements for the run, e.g. number of tips, estimated run time, etc."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 136, 2)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}CompatibleChipLayouts uses Python identifier CompatibleChipLayouts
- __CompatibleChipLayouts = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CompatibleChipLayouts'), 'CompatibleChipLayouts', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioDataModel_xsdCompatibleChipLayouts', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 28, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ProdDist uses Python identifier ProdDist
+ __ProdDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ProdDist'), 'ProdDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdProdDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 264, 8), )
- CompatibleChipLayouts = property(__CompatibleChipLayouts.value, __CompatibleChipLayouts.set, None, 'A set of Chip Layouts deemed compatible with the current plate')
+ ProdDist = property(__ProdDist.value, __ProdDist.set, None, None)
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}CompatibleSequencingKits uses Python identifier CompatibleSequencingKits
- __CompatibleSequencingKits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CompatibleSequencingKits'), 'CompatibleSequencingKits', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioDataModel_xsdCompatibleSequencingKits', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 39, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadTypeDist uses Python identifier ReadTypeDist
+ __ReadTypeDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist'), 'ReadTypeDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadTypeDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 265, 8), )
- CompatibleSequencingKits = property(__CompatibleSequencingKits.value, __CompatibleSequencingKits.set, None, 'A set of reagent kits deemed compatible with the current plate')
+ ReadTypeDist = property(__ReadTypeDist.value, __ReadTypeDist.set, None, None)
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Validation uses Python identifier Validation
- __Validation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Validation'), 'Validation', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioDataModel_xsdValidation', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadLenDist uses Python identifier ReadLenDist
+ __ReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist'), 'ReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 266, 8), )
- Validation = property(__Validation.value, __Validation.set, None, '\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ')
+ ReadLenDist = property(__ReadLenDist.value, __ReadLenDist.set, None, None)
- _ElementMap.update({
- __CompatibleChipLayouts.name() : __CompatibleChipLayouts,
- __CompatibleSequencingKits.name() : __CompatibleSequencingKits,
- __Validation.name() : __Validation
- })
- _AttributeMap.update({
-
- })
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadQualDist uses Python identifier ReadQualDist
+ __ReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist'), 'ReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 267, 8), )
+
+ ReadQualDist = property(__ReadQualDist.value, __ReadQualDist.set, None, None)
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ControlReadLenDist uses Python identifier ControlReadLenDist
+ __ControlReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist'), 'ControlReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdControlReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 268, 8), )
-# Complex type [anonymous] with content type MIXED
-class CTD_ANON_8 (pyxb.binding.basis.complexTypeDefinition):
- """A general sample description"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_MIXED
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 148, 2)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Validation uses Python identifier Validation
- __Validation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Validation'), 'Validation', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_8_httppacificbiosciences_comPacBioDataModel_xsdValidation', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1), )
+ ControlReadLenDist = property(__ControlReadLenDist.value, __ControlReadLenDist.set, None, None)
- Validation = property(__Validation.value, __Validation.set, None, '\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ')
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ControlReadQualDist uses Python identifier ControlReadQualDist
+ __ControlReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist'), 'ControlReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdControlReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 269, 8), )
- # Attribute Value uses Python identifier Value
- __Value = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Value'), 'Value', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_8_Value', pyxb.binding.datatypes.string)
- __Value._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 152, 3)
- __Value._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 152, 3)
+ ControlReadQualDist = property(__ControlReadQualDist.value, __ControlReadQualDist.set, None, None)
+
- Value = property(__Value.value, __Value.set, None, None)
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}MedianInsertDist uses Python identifier MedianInsertDist
+ __MedianInsertDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist'), 'MedianInsertDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdMedianInsertDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 270, 8), )
- _ElementMap.update({
- __Validation.name() : __Validation
- })
- _AttributeMap.update({
- __Value.name() : __Value
- })
+
+ MedianInsertDist = property(__MedianInsertDist.value, __MedianInsertDist.set, None, None)
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}InsertReadLenDist uses Python identifier InsertReadLenDist
+ __InsertReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist'), 'InsertReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdInsertReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 271, 8), )
+
+ InsertReadLenDist = property(__InsertReadLenDist.value, __InsertReadLenDist.set, None, None)
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_9 (pyxb.binding.basis.complexTypeDefinition):
- """Multiple acquisitions from different instrument runs"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 274, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Run uses Python identifier Run
- __Run = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Run'), 'Run', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioDataModel_xsdRun', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 276, 8), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}InsertReadQualDist uses Python identifier InsertReadQualDist
+ __InsertReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist'), 'InsertReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdInsertReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 272, 8), )
- Run = property(__Run.value, __Run.set, None, None)
+ InsertReadQualDist = property(__InsertReadQualDist.value, __InsertReadQualDist.set, None, None)
_ElementMap.update({
- __Run.name() : __Run
+ __AdapterDimerFraction.name() : __AdapterDimerFraction,
+ __ShortInsertFraction.name() : __ShortInsertFraction,
+ __NumSequencingZmws.name() : __NumSequencingZmws,
+ __ProdDist.name() : __ProdDist,
+ __ReadTypeDist.name() : __ReadTypeDist,
+ __ReadLenDist.name() : __ReadLenDist,
+ __ReadQualDist.name() : __ReadQualDist,
+ __ControlReadLenDist.name() : __ControlReadLenDist,
+ __ControlReadQualDist.name() : __ControlReadQualDist,
+ __MedianInsertDist.name() : __MedianInsertDist,
+ __InsertReadLenDist.name() : __InsertReadLenDist,
+ __InsertReadQualDist.name() : __InsertReadQualDist
})
_AttributeMap.update({
@@ -549,25 +419,25 @@ class CTD_ANON_9 (pyxb.binding.basis.complexTypeDefinition):
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_10 (pyxb.binding.basis.complexTypeDefinition):
- """Pointers to various data elements associated with the acquisitions"""
+class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition):
+ """The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters."""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 284, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 315, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSet uses Python identifier DataSet
- __DataSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbds, 'DataSet'), 'DataSet', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_10_httppacificbiosciences_comPacBioDatasets_xsdDataSet', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDatasets.xsd', 81, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filter uses Python identifier Filter
+ __Filter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filter'), 'Filter', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioDatasets_xsdFilter', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 317, 8), )
- DataSet = property(__DataSet.value, __DataSet.set, None, None)
+ Filter = property(__Filter.value, __Filter.set, None, None)
_ElementMap.update({
- __DataSet.name() : __DataSet
+ __Filter.name() : __Filter
})
_AttributeMap.update({
@@ -575,372 +445,328 @@ class CTD_ANON_10 (pyxb.binding.basis.complexTypeDefinition):
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_11 (pyxb.binding.basis.complexTypeDefinition):
- """Journal of metrics, system events, or alarms that were generated during this container's lifetime"""
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetMetadataType with content type ELEMENT_ONLY
+class AlignmentSetMetadataType (DataSetMetadataType):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetMetadataType with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 294, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AlignmentSetMetadataType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 121, 1)
+ _ElementMap = DataSetMetadataType._ElementMap.copy()
+ _AttributeMap = DataSetMetadataType._AttributeMap.copy()
+ # Base type is DataSetMetadataType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}RecordedEvent uses Python identifier RecordedEvent
- __RecordedEvent = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvent'), 'RecordedEvent', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioDataModel_xsdRecordedEvent', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 296, 8), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Aligner uses Python identifier Aligner
+ __Aligner = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Aligner'), 'Aligner', '__httppacificbiosciences_comPacBioDatasets_xsd_AlignmentSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAligner', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 125, 5), )
- RecordedEvent = property(__RecordedEvent.value, __RecordedEvent.set, None, "Journal of metrics, system events, or alarms that were generated during this container's lifetime")
+ Aligner = property(__Aligner.value, __Aligner.set, None, None)
+
+ # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
+
+ # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
+
+ # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
_ElementMap.update({
- __RecordedEvent.name() : __RecordedEvent
+ __Aligner.name() : __Aligner
})
_AttributeMap.update({
})
+Namespace.addCategoryObject('typeBinding', 'AlignmentSetMetadataType', AlignmentSetMetadataType)
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_12 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetMetadataType with content type ELEMENT_ONLY
+class BarcodeSetMetadataType (DataSetMetadataType):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetMetadataType with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 305, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BarcodeSetMetadataType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 142, 1)
+ _ElementMap = DataSetMetadataType._ElementMap.copy()
+ _AttributeMap = DataSetMetadataType._AttributeMap.copy()
+ # Base type is DataSetMetadataType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}BioSample uses Python identifier BioSample
- __BioSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), 'BioSample', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioDataModel_xsdBioSample', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 307, 8), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeConstruction uses Python identifier BarcodeConstruction
+ __BarcodeConstruction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction'), 'BarcodeConstruction', '__httppacificbiosciences_comPacBioDatasets_xsd_BarcodeSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdBarcodeConstruction', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 146, 5), )
- BioSample = property(__BioSample.value, __BioSample.set, None, None)
+ BarcodeConstruction = property(__BarcodeConstruction.value, __BarcodeConstruction.set, None, None)
+
+ # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
+
+ # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
+
+ # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
_ElementMap.update({
- __BioSample.name() : __BioSample
+ __BarcodeConstruction.name() : __BarcodeConstruction
})
_AttributeMap.update({
})
+Namespace.addCategoryObject('typeBinding', 'BarcodeSetMetadataType', BarcodeSetMetadataType)
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_13 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetMetadataType with content type ELEMENT_ONLY
+class ContigSetMetadataType (DataSetMetadataType):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetMetadataType with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 331, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ContigSetMetadataType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 163, 1)
+ _ElementMap = DataSetMetadataType._ElementMap.copy()
+ _AttributeMap = DataSetMetadataType._AttributeMap.copy()
+ # Base type is DataSetMetadataType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Output uses Python identifier Output
- __Output = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Output'), 'Output', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioDataModel_xsdOutput', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 65, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Contigs uses Python identifier Contigs
+ __Contigs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), 'Contigs', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdContigs', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 52, 1), )
- Output = property(__Output.value, __Output.set, None, None)
+ Contigs = property(__Contigs.value, __Contigs.set, None, 'List of contigs in a ContigSet')
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}SubreadSets uses Python identifier SubreadSets
- __SubreadSets = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SubreadSets'), 'SubreadSets', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioDataModel_xsdSubreadSets', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 412, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Organism uses Python identifier Organism
+ __Organism = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdOrganism', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 167, 5), )
- SubreadSets = property(__SubreadSets.value, __SubreadSets.set, None, None)
-
- _ElementMap.update({
- __Output.name() : __Output,
- __SubreadSets.name() : __SubreadSets
- })
- _AttributeMap.update({
-
- })
+ Organism = property(__Organism.value, __Organism.set, None, None)
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_14 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 345, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Input uses Python identifier Input
- __Input = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Input'), 'Input', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_14_httppacificbiosciences_comPacBioDataModel_xsdInput', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 64, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Ploidy uses Python identifier Ploidy
+ __Ploidy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Ploidy'), 'Ploidy', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdPloidy', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 168, 5), )
- Input = property(__Input.value, __Input.set, None, None)
+ Ploidy = property(__Ploidy.value, __Ploidy.set, None, None)
+
+ # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
+
+ # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
+
+ # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
_ElementMap.update({
- __Input.name() : __Input
+ __Contigs.name() : __Contigs,
+ __Organism.name() : __Organism,
+ __Ploidy.name() : __Ploidy
})
_AttributeMap.update({
})
-
+Namespace.addCategoryObject('typeBinding', 'ContigSetMetadataType', ContigSetMetadataType)
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_15 (pyxb.binding.basis.complexTypeDefinition):
- """Journal of metrics, system events, or alarms that were generated during this run's lifetime"""
+class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition):
+ """Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 361, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 194, 4)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}RecordedEvent uses Python identifier RecordedEvent
- __RecordedEvent = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvent'), 'RecordedEvent', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_15_httppacificbiosciences_comPacBioDataModel_xsdRecordedEvent', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 363, 8), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}CommonServicesInstanceId uses Python identifier CommonServicesInstanceId
+ __CommonServicesInstanceId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId'), 'CommonServicesInstanceId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdCommonServicesInstanceId', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 196, 6), )
- RecordedEvent = property(__RecordedEvent.value, __RecordedEvent.set, None, "Journal of metrics, system events, or alarms that were generated during this run's lifetime.\nIn the case of Primary generating the DataSet containing the sts.xml, this RecordedEvent object should be a pointer to the DataSet object generated.")
-
- _ElementMap.update({
- __RecordedEvent.name() : __RecordedEvent
- })
- _AttributeMap.update({
-
- })
-
+ CommonServicesInstanceId = property(__CommonServicesInstanceId.value, __CommonServicesInstanceId.set, None, None)
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_16 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 406, 2)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}CollectionMetadataRef uses Python identifier CollectionMetadataRef
- __CollectionMetadataRef = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadataRef'), 'CollectionMetadataRef', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioDataModel_xsdCollectionMetadataRef', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 408, 4), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}CreatorUserId uses Python identifier CreatorUserId
+ __CreatorUserId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId'), 'CreatorUserId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdCreatorUserId', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 197, 6), )
- CollectionMetadataRef = property(__CollectionMetadataRef.value, __CollectionMetadataRef.set, None, None)
+ CreatorUserId = property(__CreatorUserId.value, __CreatorUserId.set, None, None)
- _ElementMap.update({
- __CollectionMetadataRef.name() : __CollectionMetadataRef
- })
- _AttributeMap.update({
-
- })
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ParentJobId uses Python identifier ParentJobId
+ __ParentJobId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId'), 'ParentJobId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdParentJobId', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 198, 6), )
+
+ ParentJobId = property(__ParentJobId.value, __ParentJobId.set, None, None)
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ParentTool uses Python identifier ParentTool
+ __ParentTool = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ParentTool'), 'ParentTool', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdParentTool', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 199, 6), )
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_17 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 413, 2)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSet uses Python identifier SubreadSet
- __SubreadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbds, 'SubreadSet'), 'SubreadSet', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioDatasets_xsdSubreadSet', True, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDatasets.xsd', 103, 1), )
+ ParentTool = property(__ParentTool.value, __ParentTool.set, None, None)
- SubreadSet = property(__SubreadSet.value, __SubreadSet.set, None, None)
+ # Attribute CreatedBy uses Python identifier CreatedBy
+ __CreatedBy = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'CreatedBy'), 'CreatedBy', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_CreatedBy', STD_ANON, required=True)
+ __CreatedBy._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 201, 5)
+ __CreatedBy._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 201, 5)
+
+ CreatedBy = property(__CreatedBy.value, __CreatedBy.set, None, None)
_ElementMap.update({
- __SubreadSet.name() : __SubreadSet
+ __CommonServicesInstanceId.name() : __CommonServicesInstanceId,
+ __CreatorUserId.name() : __CreatorUserId,
+ __ParentJobId.name() : __ParentJobId,
+ __ParentTool.name() : __ParentTool
})
_AttributeMap.update({
-
+ __CreatedBy.name() : __CreatedBy
})
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_18 (pyxb.binding.basis.complexTypeDefinition):
- """A variable, as a name/value pair, associated with a protocol (one of Collection, Primary, and Secondary)"""
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetMetadataType with content type ELEMENT_ONLY
+class ReadSetMetadataType (DataSetMetadataType):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetMetadataType with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 70, 2)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReadSetMetadataType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 252, 1)
+ _ElementMap = DataSetMetadataType._ElementMap.copy()
+ _AttributeMap = DataSetMetadataType._AttributeMap.copy()
+ # Base type is DataSetMetadataType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Validation uses Python identifier Validation
- __Validation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Validation'), 'Validation', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_18_httppacificbiosciences_comPacBioDataModel_xsdValidation', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1), )
+ # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Collections uses Python identifier Collections
+ __Collections = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections'), 'Collections', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollections', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 20, 1), )
- Validation = property(__Validation.value, __Validation.set, None, '\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ')
+ Collections = property(__Collections.value, __Collections.set, None, 'A set of acquisition definitions')
- # Attribute Name uses Python identifier Name
- __Name = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Name'), 'Name', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_18_Name', STD_ANON, required=True)
- __Name._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 74, 3)
- __Name._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 74, 3)
+ # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
+
+ # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
+
+ # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
- Name = property(__Name.value, __Name.set, None, None)
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}SummaryStats uses Python identifier SummaryStats
+ __SummaryStats = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats'), 'SummaryStats', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdSummaryStats', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 258, 5), )
- # Attribute Value uses Python identifier Value
- __Value = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Value'), 'Value', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_18_Value', pyxb.binding.datatypes.string, required=True)
- __Value._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 91, 3)
- __Value._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 91, 3)
+ SummaryStats = property(__SummaryStats.value, __SummaryStats.set, None, None)
+
+
+ # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamples uses Python identifier BioSamples
+ __BioSamples = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples'), 'BioSamples', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamples', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 134, 1), )
+
- Value = property(__Value.value, __Value.set, None, None)
+ BioSamples = property(__BioSamples.value, __BioSamples.set, None, None)
_ElementMap.update({
- __Validation.name() : __Validation
+ __Collections.name() : __Collections,
+ __SummaryStats.name() : __SummaryStats,
+ __BioSamples.name() : __BioSamples
})
_AttributeMap.update({
- __Name.name() : __Name,
- __Value.name() : __Value
+
})
+Namespace.addCategoryObject('typeBinding', 'ReadSetMetadataType', ReadSetMetadataType)
-
-# Complex type [anonymous] with content type EMPTY
-class CTD_ANON_19 (pyxb.binding.basis.complexTypeDefinition):
- """
- A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.
- """
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetMetadataType with content type ELEMENT_ONLY
+class SubreadSetMetadataType (DataSetMetadataType):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetMetadataType with content type ELEMENT_ONLY"""
_TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_EMPTY
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 161, 2)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubreadSetMetadataType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 292, 1)
+ _ElementMap = DataSetMetadataType._ElementMap.copy()
+ _AttributeMap = DataSetMetadataType._AttributeMap.copy()
+ # Base type is DataSetMetadataType
- # Attribute IsValid uses Python identifier IsValid
- __IsValid = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsValid'), 'IsValid', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_19_IsValid', pyxb.binding.datatypes.boolean, required=True)
- __IsValid._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 162, 3)
- __IsValid._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 162, 3)
+ # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
- IsValid = property(__IsValid.value, __IsValid.set, None, '\n Indicates whether or not the element is valid. The assumption is that the\n Validation element is omitted unless the element is invalid, in which case,\n the Validation element would describe the problem.\n ')
-
+ # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
- # Attribute ID uses Python identifier ID
- __ID = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ID'), 'ID', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_19_ID', pyxb.binding.datatypes.string, required=True)
- __ID._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 171, 3)
- __ID._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 171, 3)
+ # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
- ID = property(__ID.value, __ID.set, None, '\n An identifier which can be used by client applications to translate/map\n to a human decipherable message.\n ')
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AverageSubreadLength uses Python identifier AverageSubreadLength
+ __AverageSubreadLength = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength'), 'AverageSubreadLength', '__httppacificbiosciences_comPacBioDatasets_xsd_SubreadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAverageSubreadLength', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 296, 5), )
- # Attribute Source uses Python identifier Source
- __Source = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Source'), 'Source', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_19_Source', STD_ANON_, required=True)
- __Source._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 179, 3)
- __Source._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 179, 3)
-
- Source = property(__Source.value, __Source.set, None, '\n This is the element which has experienced a validation issue.\n ')
+ AverageSubreadLength = property(__AverageSubreadLength.value, __AverageSubreadLength.set, None, None)
- # Attribute ElementPath uses Python identifier ElementPath
- __ElementPath = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ElementPath'), 'ElementPath', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_19_ElementPath', pyxb.binding.datatypes.string)
- __ElementPath._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 224, 3)
- __ElementPath._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 224, 3)
-
- ElementPath = property(__ElementPath.value, __ElementPath.set, None, '\n An optional string attribute which holds the path to the offending element.\n ')
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AverageSubreadQuality uses Python identifier AverageSubreadQuality
+ __AverageSubreadQuality = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality'), 'AverageSubreadQuality', '__httppacificbiosciences_comPacBioDatasets_xsd_SubreadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAverageSubreadQuality', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 297, 5), )
- # Attribute SupplementalInfo uses Python identifier SupplementalInfo
- __SupplementalInfo = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SupplementalInfo'), 'SupplementalInfo', '__httppacificbiosciences_comPacBioDataModel_xsd_CTD_ANON_19_SupplementalInfo', pyxb.binding.datatypes.string)
- __SupplementalInfo._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 231, 3)
- __SupplementalInfo._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 231, 3)
-
- SupplementalInfo = property(__SupplementalInfo.value, __SupplementalInfo.set, None, '\n An optional string attribute which holds extraneous information.\n ')
+ AverageSubreadQuality = property(__AverageSubreadQuality.value, __AverageSubreadQuality.set, None, None)
_ElementMap.update({
-
+ __AverageSubreadLength.name() : __AverageSubreadLength,
+ __AverageSubreadQuality.name() : __AverageSubreadQuality
})
_AttributeMap.update({
- __IsValid.name() : __IsValid,
- __ID.name() : __ID,
- __Source.name() : __Source,
- __ElementPath.name() : __ElementPath,
- __SupplementalInfo.name() : __SupplementalInfo
+
})
+Namespace.addCategoryObject('typeBinding', 'SubreadSetMetadataType', SubreadSetMetadataType)
-
-# Complex type {http://pacificbiosciences.com/PacBioDataModel.xsd}ExperimentContainerType with content type ELEMENT_ONLY
-class ExperimentContainerType (_ImportedBinding__pbbase.BaseEntityType):
- """A composite object type that can encompass multiple runs, possibly across multiple instruments.
-
-One use case may be that a user may have a large genome they'd like to sequence, and it may take multiple runs on multiple instruments, to get enough data. Another use case may be that a user has multiple samples of the same phenotype which they would like to analyze in a similar fashion/automation, and as such these samples are run as part of one experiment.
-
-The experiment object is intended to be packagable, such that the metadata of all acquisitions within is contained."""
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_6 (_ImportedBinding__pbbase.BaseEntityType):
+ """List of contigs in a ContigSet"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ExperimentContainerType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 249, 1)
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 56, 2)
_ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.BaseEntityType
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}InvestigatorName uses Python identifier InvestigatorName
- __InvestigatorName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InvestigatorName'), 'InvestigatorName', '__httppacificbiosciences_comPacBioDataModel_xsd_ExperimentContainerType_httppacificbiosciences_comPacBioDataModel_xsdInvestigatorName', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 260, 5), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Contig uses Python identifier Contig
+ __Contig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Contig'), 'Contig', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioDatasets_xsdContig', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 60, 6), )
- InvestigatorName = property(__InvestigatorName.value, __InvestigatorName.set, None, 'An optional PI name')
+ Contig = property(__Contig.value, __Contig.set, None, None)
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}CreatedDate uses Python identifier CreatedDate
- __CreatedDate = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CreatedDate'), 'CreatedDate', '__httppacificbiosciences_comPacBioDataModel_xsd_ExperimentContainerType_httppacificbiosciences_comPacBioDataModel_xsdCreatedDate', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 265, 5), )
-
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- CreatedDate = property(__CreatedDate.value, __CreatedDate.set, None, 'Automatically generated creation date')
-
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Runs uses Python identifier Runs
- __Runs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Runs'), 'Runs', '__httppacificbiosciences_comPacBioDataModel_xsd_ExperimentContainerType_httppacificbiosciences_comPacBioDataModel_xsdRuns', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 270, 5), )
-
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- Runs = property(__Runs.value, __Runs.set, None, 'Multiple acquisitions from different instrument runs')
-
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}DataSets uses Python identifier DataSets
- __DataSets = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSets'), 'DataSets', '__httppacificbiosciences_comPacBioDataModel_xsd_ExperimentContainerType_httppacificbiosciences_comPacBioDataModel_xsdDataSets', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 280, 5), )
-
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- DataSets = property(__DataSets.value, __DataSets.set, None, 'Pointers to various data elements associated with the acquisitions')
-
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}RecordedEvents uses Python identifier RecordedEvents
- __RecordedEvents = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvents'), 'RecordedEvents', '__httppacificbiosciences_comPacBioDataModel_xsd_ExperimentContainerType_httppacificbiosciences_comPacBioDataModel_xsdRecordedEvents', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 290, 5), )
-
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- RecordedEvents = property(__RecordedEvents.value, __RecordedEvents.set, None, "Journal of metrics, system events, or alarms that were generated during this container's lifetime")
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+ _ElementMap.update({
+ __Contig.name() : __Contig
+ })
+ _AttributeMap.update({
+
+ })
-
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}BioSamples uses Python identifier BioSamples
- __BioSamples = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), 'BioSamples', '__httppacificbiosciences_comPacBioDataModel_xsd_ExperimentContainerType_httppacificbiosciences_comPacBioDataModel_xsdBioSamples', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 304, 5), )
-
- BioSamples = property(__BioSamples.value, __BioSamples.set, None, None)
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_7 (_ImportedBinding__pbbase.BaseEntityType):
+ """Complex type [anonymous] with content type ELEMENT_ONLY"""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 61, 7)
+ _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
+ _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
+ # Base type is _ImportedBinding__pbbase.BaseEntityType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
@@ -958,59 +784,64 @@ The experiment object is intended to be packagable, such that the metadata of al
# Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Attribute ExperimentId uses Python identifier ExperimentId
- __ExperimentId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ExperimentId'), 'ExperimentId', '__httppacificbiosciences_comPacBioDataModel_xsd_ExperimentContainerType_ExperimentId', pyxb.binding.datatypes.string)
- __ExperimentId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 312, 4)
- __ExperimentId._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 312, 4)
+ # Attribute Length uses Python identifier Length
+ __Length = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Length'), 'Length', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_7_Length', pyxb.binding.datatypes.anySimpleType, required=True)
+ __Length._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 64, 10)
+ __Length._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 64, 10)
- ExperimentId = property(__ExperimentId.value, __ExperimentId.set, None, None)
+ Length = property(__Length.value, __Length.set, None, None)
- # Attribute TimeStampedName uses Python identifier TimeStampedName
- __TimeStampedName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TimeStampedName'), 'TimeStampedName', '__httppacificbiosciences_comPacBioDataModel_xsd_ExperimentContainerType_TimeStampedName', pyxb.binding.datatypes.string)
- __TimeStampedName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 313, 4)
- __TimeStampedName._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 313, 4)
+ # Attribute Digest uses Python identifier Digest
+ __Digest = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Digest'), 'Digest', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_7_Digest', pyxb.binding.datatypes.anySimpleType, required=True)
+ __Digest._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 65, 10)
+ __Digest._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 65, 10)
- TimeStampedName = property(__TimeStampedName.value, __TimeStampedName.set, None, 'This is NOT intended to be used as a unique field. For uniqueness, use UniqueId. In order to not utilize customer provided names, this attribute may be used as an alternative means of Human Readable ID, e.g. instrumentId-Run-150304_231155')
+ Digest = property(__Digest.value, __Digest.set, None, None)
_ElementMap.update({
- __InvestigatorName.name() : __InvestigatorName,
- __CreatedDate.name() : __CreatedDate,
- __Runs.name() : __Runs,
- __DataSets.name() : __DataSets,
- __RecordedEvents.name() : __RecordedEvents,
- __BioSamples.name() : __BioSamples
+
})
_AttributeMap.update({
- __ExperimentId.name() : __ExperimentId,
- __TimeStampedName.name() : __TimeStampedName
+ __Length.name() : __Length,
+ __Digest.name() : __Digest
})
-Namespace.addCategoryObject('typeBinding', 'ExperimentContainerType', ExperimentContainerType)
-# Complex type {http://pacificbiosciences.com/PacBioDataModel.xsd}AssayType with content type ELEMENT_ONLY
-class AssayType (_ImportedBinding__pbbase.DataEntityType):
- """Complex type {http://pacificbiosciences.com/PacBioDataModel.xsd}AssayType with content type ELEMENT_ONLY"""
+
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType with content type ELEMENT_ONLY
+class DataSetType (_ImportedBinding__pbbase.StrictEntityType):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AssayType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 240, 1)
- _ElementMap = _ImportedBinding__pbbase.DataEntityType._ElementMap.copy()
- _AttributeMap = _ImportedBinding__pbbase.DataEntityType._AttributeMap.copy()
- # Base type is _ImportedBinding__pbbase.DataEntityType
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 226, 1)
+ _ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy()
+ _AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy()
+ # Base type is _ImportedBinding__pbbase.StrictEntityType
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Element EncodedValue ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}EncodedValue) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
+ # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources uses Python identifier ExternalResources
+ __ExternalResources = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources'), 'ExternalResources', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResources', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 256, 1), )
+
+
+ ExternalResources = property(__ExternalResources.value, __ExternalResources.set, None, 'Pointers to data that do not reside inside the parent structure')
+
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filters uses Python identifier Filters
+ __Filters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filters'), 'Filters', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioDatasets_xsdFilters', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5), )
+
- # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
+ Filters = property(__Filters.value, __Filters.set, None, 'The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.')
+
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}SubreadSets uses Python identifier SubreadSets
- __SubreadSets = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SubreadSets'), 'SubreadSets', '__httppacificbiosciences_comPacBioDataModel_xsd_AssayType_httppacificbiosciences_comPacBioDataModel_xsdSubreadSets', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 412, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets uses Python identifier DataSets
+ __DataSets = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSets'), 'DataSets', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSets', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5), )
- SubreadSets = property(__SubreadSets.value, __SubreadSets.set, None, None)
+ DataSets = property(__DataSets.value, __DataSets.set, None, None)
# Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
@@ -1029,73 +860,108 @@ class AssayType (_ImportedBinding__pbbase.DataEntityType):
# Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
-
- # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
_ElementMap.update({
- __SubreadSets.name() : __SubreadSets
+ __ExternalResources.name() : __ExternalResources,
+ __Filters.name() : __Filters,
+ __DataSets.name() : __DataSets
})
_AttributeMap.update({
})
-Namespace.addCategoryObject('typeBinding', 'AssayType', AssayType)
+Namespace.addCategoryObject('typeBinding', 'DataSetType', DataSetType)
-# Complex type {http://pacificbiosciences.com/PacBioDataModel.xsd}RunType with content type ELEMENT_ONLY
-class RunType (_ImportedBinding__pbbase.StrictEntityType):
- """A run is defined as a set of one or more data collections acquired in sequence on an instrument. A run specifies the wells and SMRT Cells to include in the sequencing run, along with the collection and analysis automation to use for the selected wells and cells.
-
-"""
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubsetType with content type ELEMENT_ONLY
+class SubsetType (_ImportedBinding__pbbase.StrictEntityType):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubsetType with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'RunType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 321, 1)
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubsetType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 307, 1)
_ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.StrictEntityType
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Assay uses Python identifier Assay
- __Assay = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Assay'), 'Assay', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_httppacificbiosciences_comPacBioDataModel_xsdAssay', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 10, 1), )
+ # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataPointers uses Python identifier DataPointers
+ __DataPointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers'), 'DataPointers', '__httppacificbiosciences_comPacBioDatasets_xsd_SubsetType_httppacificbiosciences_comPacBioBaseDataModel_xsdDataPointers', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 222, 1), )
- Assay = property(__Assay.value, __Assay.set, None, None)
+ DataPointers = property(__DataPointers.value, __DataPointers.set, None, 'Pointer list to UniqueIds in the system')
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}RunResources uses Python identifier RunResources
- __RunResources = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RunResources'), 'RunResources', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_httppacificbiosciences_comPacBioDataModel_xsdRunResources', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 132, 1), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filters uses Python identifier Filters
+ __Filters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filters'), 'Filters', '__httppacificbiosciences_comPacBioDatasets_xsd_SubsetType_httppacificbiosciences_comPacBioDatasets_xsdFilters', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 311, 5), )
- RunResources = property(__RunResources.value, __RunResources.set, None, 'This is an output field specifying the requirements for the run, e.g. number of tips, estimated run time, etc.')
+ Filters = property(__Filters.value, __Filters.set, None, 'The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.')
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Outputs uses Python identifier Outputs
- __Outputs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Outputs'), 'Outputs', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_httppacificbiosciences_comPacBioDataModel_xsdOutputs', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 330, 5), )
-
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- Outputs = property(__Outputs.value, __Outputs.set, None, None)
-
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}Inputs uses Python identifier Inputs
- __Inputs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Inputs'), 'Inputs', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_httppacificbiosciences_comPacBioDataModel_xsdInputs', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 344, 5), )
-
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- Inputs = property(__Inputs.value, __Inputs.set, None, None)
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+ __DataPointers.name() : __DataPointers,
+ __Filters.name() : __Filters
+ })
+ _AttributeMap.update({
+
+ })
+Namespace.addCategoryObject('typeBinding', 'SubsetType', SubsetType)
+
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_8 (DataSetType):
+ """DataSets of CCS reads (typically in unaligned BAM format)."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 42, 2)
+ _ElementMap = DataSetType._ElementMap.copy()
+ _AttributeMap = DataSetType._AttributeMap.copy()
+ # Base type is DataSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
- # Element {http://pacificbiosciences.com/PacBioDataModel.xsd}RecordedEvents uses Python identifier RecordedEvents
- __RecordedEvents = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvents'), 'RecordedEvents', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_httppacificbiosciences_comPacBioDataModel_xsdRecordedEvents', False, pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 357, 5), )
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
+ __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_8_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 46, 6), )
- RecordedEvents = property(__RecordedEvents.value, __RecordedEvents.set, None, "Journal of metrics, system events, or alarms that were generated during this run's lifetime")
+ DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
# Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
@@ -1117,217 +983,1421 @@ class RunType (_ImportedBinding__pbbase.StrictEntityType):
# Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
# Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+ __DataSetMetadata.name() : __DataSetMetadata
+ })
+ _AttributeMap.update({
+
+ })
+
+
+
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType with content type ELEMENT_ONLY
+class AlignmentSetType (DataSetType):
+ """Type for DataSets consisting of aligned subreads and CCS reads."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AlignmentSetType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 130, 1)
+ _ElementMap = DataSetType._ElementMap.copy()
+ _AttributeMap = DataSetType._AttributeMap.copy()
+ # Base type is DataSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Attribute Status uses Python identifier Status
- __Status = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Status'), 'Status', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_Status', _ImportedBinding__pbbase.SupportedRunStates)
- __Status._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 373, 4)
- __Status._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 373, 4)
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
- Status = property(__Status.value, __Status.set, None, None)
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
+ __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_AlignmentSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 137, 5), )
- # Attribute InstrumentId uses Python identifier InstrumentId
- __InstrumentId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InstrumentId'), 'InstrumentId', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_InstrumentId', pyxb.binding.datatypes.string)
- __InstrumentId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 374, 4)
- __InstrumentId._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 374, 4)
-
- InstrumentId = property(__InstrumentId.value, __InstrumentId.set, None, 'World unique id assigned by PacBio. ')
+ DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
- # Attribute InstrumentName uses Python identifier InstrumentName
- __InstrumentName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InstrumentName'), 'InstrumentName', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_InstrumentName', pyxb.binding.datatypes.string)
- __InstrumentName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 379, 4)
- __InstrumentName._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 379, 4)
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
- InstrumentName = property(__InstrumentName.value, __InstrumentName.set, None, 'Friendly name assigned by customer')
-
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
- # Attribute CreatedBy uses Python identifier CreatedBy
- __CreatedBy = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'CreatedBy'), 'CreatedBy', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_CreatedBy', pyxb.binding.datatypes.string)
- __CreatedBy._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 384, 4)
- __CreatedBy._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 384, 4)
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- CreatedBy = property(__CreatedBy.value, __CreatedBy.set, None, 'Who created the run. ')
-
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Attribute StartedBy uses Python identifier StartedBy
- __StartedBy = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'StartedBy'), 'StartedBy', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_StartedBy', pyxb.binding.datatypes.string)
- __StartedBy._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 389, 4)
- __StartedBy._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 389, 4)
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- StartedBy = property(__StartedBy.value, __StartedBy.set, None, 'Who started the run. Could be different from who created it. ')
-
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- # Attribute WhenStarted uses Python identifier WhenStarted
- __WhenStarted = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'WhenStarted'), 'WhenStarted', '__httppacificbiosciences_comPacBioDataModel_xsd_RunType_WhenStarted', STD_ANON_2)
- __WhenStarted._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 394, 4)
- __WhenStarted._UseLocation = pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 394, 4)
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- WhenStarted = property(__WhenStarted.value, __WhenStarted.set, None, 'Date and time of when the overall run was started. ')
-
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
_ElementMap.update({
- __Assay.name() : __Assay,
- __RunResources.name() : __RunResources,
- __Outputs.name() : __Outputs,
- __Inputs.name() : __Inputs,
- __RecordedEvents.name() : __RecordedEvents
+ __DataSetMetadata.name() : __DataSetMetadata
})
_AttributeMap.update({
- __Status.name() : __Status,
- __InstrumentId.name() : __InstrumentId,
- __InstrumentName.name() : __InstrumentName,
- __CreatedBy.name() : __CreatedBy,
- __StartedBy.name() : __StartedBy,
- __WhenStarted.name() : __WhenStarted
+
})
-Namespace.addCategoryObject('typeBinding', 'RunType', RunType)
-
-
-ChipLayout = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), CTD_ANON, documentation='Part of the RunResources; specifies a ChipLayout which is compatible with the collection protocols defined on the plate', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 11, 1))
-Namespace.addCategoryObject('elementBinding', ChipLayout.name().localName(), ChipLayout)
-
-CompatibleChipLayouts = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CompatibleChipLayouts'), CTD_ANON_, documentation='A set of Chip Layouts deemed compatible with the current plate', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 28, 1))
-Namespace.addCategoryObject('elementBinding', CompatibleChipLayouts.name().localName(), CompatibleChipLayouts)
-
-CompatibleSequencingKits = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CompatibleSequencingKits'), CTD_ANON_2, documentation='A set of reagent kits deemed compatible with the current plate', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 39, 1))
-Namespace.addCategoryObject('elementBinding', CompatibleSequencingKits.name().localName(), CompatibleSequencingKits)
+Namespace.addCategoryObject('typeBinding', 'AlignmentSetType', AlignmentSetType)
-EstimatedTotalRunTime = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'EstimatedTotalRunTime'), CTD_ANON_3, documentation='The total amount of time the run is estimated to require. A confidence value (defaulted to 90%) indicates the degree of certainty associated with the estimate', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 51, 1))
-Namespace.addCategoryObject('elementBinding', EstimatedTotalRunTime.name().localName(), EstimatedTotalRunTime)
-PacBioDataModel = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioDataModel'), CTD_ANON_4, documentation='PacBio Data Model root element', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 94, 1))
-Namespace.addCategoryObject('elementBinding', PacBioDataModel.name().localName(), PacBioDataModel)
-
-RequiredSMRTCells = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RequiredSMRTCells'), CTD_ANON_5, documentation='Part of the RunResources; specifies the required number of SMRT cells', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 109, 1))
-Namespace.addCategoryObject('elementBinding', RequiredSMRTCells.name().localName(), RequiredSMRTCells)
-
-RequiredTips = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RequiredTips'), CTD_ANON_6, documentation='Part of the RunResources; specifies the required number of tips via two attributes, Left and Right', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 120, 1))
-Namespace.addCategoryObject('elementBinding', RequiredTips.name().localName(), RequiredTips)
-
-RunResources = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RunResources'), CTD_ANON_7, documentation='This is an output field specifying the requirements for the run, e.g. number of tips, estimated run time, etc.', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 132, 1))
-Namespace.addCategoryObject('elementBinding', RunResources.name().localName(), RunResources)
-
-SampleComment = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleComment'), CTD_ANON_8, documentation='A general sample description', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 144, 1))
-Namespace.addCategoryObject('elementBinding', SampleComment.name().localName(), SampleComment)
-
-CollectionReferences = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionReferences'), CTD_ANON_16, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 405, 1))
-Namespace.addCategoryObject('elementBinding', CollectionReferences.name().localName(), CollectionReferences)
-
-SubreadSets = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSets'), CTD_ANON_17, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 412, 1))
-Namespace.addCategoryObject('elementBinding', SubreadSets.name().localName(), SubreadSets)
-
-Parameter = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Parameter'), CTD_ANON_18, documentation='A variable, as a name/value pair, associated with a protocol (one of Collection, Primary, and Secondary)', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 66, 1))
-Namespace.addCategoryObject('elementBinding', Parameter.name().localName(), Parameter)
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetType with content type ELEMENT_ONLY
+class BarcodeSetType (DataSetType):
+ """Type for the Barcode DataSet."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BarcodeSetType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 151, 1)
+ _ElementMap = DataSetType._ElementMap.copy()
+ _AttributeMap = DataSetType._AttributeMap.copy()
+ # Base type is DataSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
+ __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_BarcodeSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 158, 5), )
-Validation = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1))
-Namespace.addCategoryObject('elementBinding', Validation.name().localName(), Validation)
+
+ DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
-Assay = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Assay'), AssayType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 10, 1))
-Namespace.addCategoryObject('elementBinding', Assay.name().localName(), Assay)
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+ __DataSetMetadata.name() : __DataSetMetadata
+ })
+ _AttributeMap.update({
+
+ })
+Namespace.addCategoryObject('typeBinding', 'BarcodeSetType', BarcodeSetType)
-Events = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Events'), _ImportedBinding__pbbase.RecordedEventType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 63, 1))
-Namespace.addCategoryObject('elementBinding', Events.name().localName(), Events)
-Input = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Input'), _ImportedBinding__pbbase.InputOutputDataType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 64, 1))
-Namespace.addCategoryObject('elementBinding', Input.name().localName(), Input)
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType with content type ELEMENT_ONLY
+class ContigSetType (DataSetType):
+ """Type for a Contig DataSet."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ContigSetType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 174, 1)
+ _ElementMap = DataSetType._ElementMap.copy()
+ _AttributeMap = DataSetType._AttributeMap.copy()
+ # Base type is DataSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
+ __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 181, 5), )
-Output = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Output'), _ImportedBinding__pbbase.InputOutputDataType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 65, 1))
-Namespace.addCategoryObject('elementBinding', Output.name().localName(), Output)
+
+ DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+ __DataSetMetadata.name() : __DataSetMetadata
+ })
+ _AttributeMap.update({
+
+ })
+Namespace.addCategoryObject('typeBinding', 'ContigSetType', ContigSetType)
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, scope=CTD_ANON, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1)))
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType with content type ELEMENT_ONLY
+class ReadSetType (DataSetType):
+ """Type for DataSets consisting of unaligned subreads and CCS reads DataSets"""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReadSetType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 280, 1)
+ _ElementMap = DataSetType._ElementMap.copy()
+ _AttributeMap = DataSetType._AttributeMap.copy()
+ # Base type is DataSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
+ __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5), )
-def _BuildAutomaton ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton
- del _BuildAutomaton
- import pyxb.utils.fac as fac
+
+ DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 17, 4))
- counters.add(cc_0)
- states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Validation')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 17, 4))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON._Automaton = _BuildAutomaton()
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+ __DataSetMetadata.name() : __DataSetMetadata
+ })
+ _AttributeMap.update({
+
+ })
+Namespace.addCategoryObject('typeBinding', 'ReadSetType', ReadSetType)
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_9 (AlignmentSetType):
+ """DataSets for aligned subreads and CCS reads."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 12, 2)
+ _ElementMap = AlignmentSetType._ElementMap.copy()
+ _AttributeMap = AlignmentSetType._AttributeMap.copy()
+ # Base type is AlignmentSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+
+ })
+
+
+
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_10 (BarcodeSetType):
+ """DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 22, 2)
+ _ElementMap = BarcodeSetType._ElementMap.copy()
+ _AttributeMap = BarcodeSetType._AttributeMap.copy()
+ # Base type is BarcodeSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+
+ })
+
+
+
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_11 (AlignmentSetType):
+ """DataSets of aligned CCS reads."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 32, 2)
+ _ElementMap = AlignmentSetType._ElementMap.copy()
+ _AttributeMap = AlignmentSetType._AttributeMap.copy()
+ # Base type is AlignmentSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+
+ })
+
+
+
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_12 (ContigSetType):
+ """DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP)."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 79, 2)
+ _ElementMap = ContigSetType._ElementMap.copy()
+ _AttributeMap = ContigSetType._AttributeMap.copy()
+ # Base type is ContigSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+
+ })
+
+
+
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_13 (ReadSetType):
+ """DataSets of subreads in bax.h5 or bas.h5 format."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 91, 2)
+ _ElementMap = ReadSetType._ElementMap.copy()
+ _AttributeMap = ReadSetType._AttributeMap.copy()
+ # Base type is ReadSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+
+ })
+
+
+
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_14 (ContigSetType):
+ """DataSets of reference sequences. Replaces the reference.info.xml."""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 101, 2)
+ _ElementMap = ContigSetType._ElementMap.copy()
+ _AttributeMap = ContigSetType._AttributeMap.copy()
+ # Base type is ContigSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+
+ })
+
+
+
+# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetType with content type ELEMENT_ONLY
+class SubreadSetType (ReadSetType):
+ """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetType with content type ELEMENT_ONLY"""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubreadSetType')
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 302, 1)
+ _ElementMap = ReadSetType._ElementMap.copy()
+ _AttributeMap = ReadSetType._AttributeMap.copy()
+ # Base type is ReadSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+
+ })
+Namespace.addCategoryObject('typeBinding', 'SubreadSetType', SubreadSetType)
+
+
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_15 (SubreadSetType):
+ """Complex type [anonymous] with content type ELEMENT_ONLY"""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 108, 2)
+ _ElementMap = SubreadSetType._ElementMap.copy()
+ _AttributeMap = SubreadSetType._AttributeMap.copy()
+ # Base type is SubreadSetType
+
+ # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
+
+ # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType
+
+ # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
+
+ # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+
+ # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+
+ })
+
+
+
+DataSetRoot = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetRoot'), DataSetRootType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 86, 1))
+Namespace.addCategoryObject('elementBinding', DataSetRoot.name().localName(), DataSetRoot)
+
+Subsets = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Subsets'), CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 114, 1))
+Namespace.addCategoryObject('elementBinding', Subsets.name().localName(), Subsets)
+
+Contigs = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), CTD_ANON_6, documentation='List of contigs in a ContigSet', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 52, 1))
+Namespace.addCategoryObject('elementBinding', Contigs.name().localName(), Contigs)
+
+DataSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), DataSetType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 85, 1))
+Namespace.addCategoryObject('elementBinding', DataSet.name().localName(), DataSet)
+
+ConsensusReadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), CTD_ANON_8, documentation='DataSets of CCS reads (typically in unaligned BAM format).', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 38, 1))
+Namespace.addCategoryObject('elementBinding', ConsensusReadSet.name().localName(), ConsensusReadSet)
+
+AlignmentSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), CTD_ANON_9, documentation='DataSets for aligned subreads and CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 8, 1))
+Namespace.addCategoryObject('elementBinding', AlignmentSet.name().localName(), AlignmentSet)
+
+BarcodeSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), CTD_ANON_10, documentation='DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 18, 1))
+Namespace.addCategoryObject('elementBinding', BarcodeSet.name().localName(), BarcodeSet)
+
+ConsensusAlignmentSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), CTD_ANON_11, documentation='DataSets of aligned CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 28, 1))
+Namespace.addCategoryObject('elementBinding', ConsensusAlignmentSet.name().localName(), ConsensusAlignmentSet)
+
+ContigSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), CTD_ANON_12, documentation='DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 75, 1))
+Namespace.addCategoryObject('elementBinding', ContigSet.name().localName(), ContigSet)
+
+HdfSubreadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), CTD_ANON_13, documentation='DataSets of subreads in bax.h5 or bas.h5 format.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 87, 1))
+Namespace.addCategoryObject('elementBinding', HdfSubreadSet.name().localName(), HdfSubreadSet)
+
+ReferenceSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), CTD_ANON_14, documentation='DataSets of reference sequences. Replaces the reference.info.xml.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 97, 1))
+Namespace.addCategoryObject('elementBinding', ReferenceSet.name().localName(), ReferenceSet)
+
+SubreadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), CTD_ANON_15, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 107, 1))
+Namespace.addCategoryObject('elementBinding', SubreadSet.name().localName(), SubreadSet)
+
+
+
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Subset'), SubsetType, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 117, 4)))
+
+def _BuildAutomaton ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton
+ del _BuildAutomaton
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ states = []
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Subset')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 117, 4))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ transitions = []
+ transitions.append(fac.Transition(st_0, [
+ ]))
+ st_0._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+CTD_ANON._Automaton = _BuildAutomaton()
+
+
+
+
+DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TotalLength'), pyxb.binding.datatypes.long, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 191, 3)))
+
+DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumRecords'), pyxb.binding.datatypes.int, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 192, 3)))
+
+DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Provenance'), CTD_ANON_5, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3)))
+
+def _BuildAutomaton_ ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_
+ del _BuildAutomaton_
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ counters.add(cc_0)
+ states = []
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 191, 3))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 192, 3))
+ st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_0, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ transitions = []
+ transitions.append(fac.Transition(st_1, [
+ ]))
+ st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ st_2._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+DataSetMetadataType._Automaton = _BuildAutomaton_()
+
+
+
+
+DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), CTD_ANON_9, scope=DataSetRootType, documentation='DataSets for aligned subreads and CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 8, 1)))
+
+DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), CTD_ANON_10, scope=DataSetRootType, documentation='DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 18, 1)))
+
+DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), CTD_ANON_11, scope=DataSetRootType, documentation='DataSets of aligned CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 28, 1)))
+
+DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), CTD_ANON_8, scope=DataSetRootType, documentation='DataSets of CCS reads (typically in unaligned BAM format).', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 38, 1)))
+
+DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), CTD_ANON_12, scope=DataSetRootType, documentation='DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 75, 1)))
+
+DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), CTD_ANON_13, scope=DataSetRootType, documentation='DataSets of subreads in bax.h5 or bas.h5 format.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 87, 1)))
+
+DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), CTD_ANON_14, scope=DataSetRootType, documentation='DataSets of reference sequences. Replaces the reference.info.xml.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 97, 1)))
+
+DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), CTD_ANON_15, scope=DataSetRootType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 107, 1)))
+
+def _BuildAutomaton_2 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_2
+ del _BuildAutomaton_2
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 216, 3))
+ counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 217, 3))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 218, 3))
+ counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 219, 3))
+ counters.add(cc_3)
+ cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 220, 3))
+ counters.add(cc_4)
+ cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 221, 3))
+ counters.add(cc_5)
+ cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 222, 3))
+ counters.add(cc_6)
+ cc_7 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 223, 3))
+ counters.add(cc_7)
+ states = []
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_0, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 216, 3))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 217, 3))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 218, 3))
+ st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 219, 3))
+ st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_4, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ContigSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 220, 3))
+ st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_5, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 221, 3))
+ st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_5)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_6, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 222, 3))
+ st_6 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_6)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_7, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 223, 3))
+ st_7 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_7)
+ transitions = []
+ transitions.append(fac.Transition(st_0, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_4, True) ]))
+ st_4._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_5, [
+ fac.UpdateInstruction(cc_5, True) ]))
+ st_5._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_6, [
+ fac.UpdateInstruction(cc_6, True) ]))
+ st_6._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_7, [
+ fac.UpdateInstruction(cc_7, True) ]))
+ st_7._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, True, containing_state=None)
+DataSetRootType._Automaton = _BuildAutomaton_2()
+
+
+
+
+CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filter'), _ImportedBinding__pbbase.FilterType, scope=CTD_ANON_, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 237, 8)))
+
+def _BuildAutomaton_3 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_3
+ del _BuildAutomaton_3
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ states = []
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filter')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 237, 8))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ transitions = []
+ transitions.append(fac.Transition(st_0, [
+ ]))
+ st_0._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+CTD_ANON_._Automaton = _BuildAutomaton_3()
+
+
+
+
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), DataSetType, scope=CTD_ANON_2, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 85, 1)))
+
+def _BuildAutomaton_4 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_4
+ del _BuildAutomaton_4
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 244, 8))
+ counters.add(cc_0)
+ states = []
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_0, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 244, 8))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ transitions = []
+ transitions.append(fac.Transition(st_0, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ st_0._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, True, containing_state=None)
+CTD_ANON_2._Automaton = _BuildAutomaton_4()
+
+
+
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction'), pyxb.binding.datatypes.float, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 261, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction'), pyxb.binding.datatypes.float, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 262, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws'), pyxb.binding.datatypes.int, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 263, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ProdDist'), _ImportedBinding__pbbase.StatsDiscreteDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 264, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist'), _ImportedBinding__pbbase.StatsDiscreteDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 265, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 266, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 267, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 268, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 269, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 270, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 271, 8)))
+
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 272, 8)))
+
+def _BuildAutomaton_5 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_5
+ del _BuildAutomaton_5
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ states = []
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 261, 8))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 262, 8))
+ st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 263, 8))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ProdDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 264, 8))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 265, 8))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 266, 8))
+ st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_5)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 267, 8))
+ st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_6)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 268, 8))
+ st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_7)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 269, 8))
+ st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_8)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 270, 8))
+ st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_9)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 271, 8))
+ st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_10)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 272, 8))
+ st_11 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_11)
+ transitions = []
+ transitions.append(fac.Transition(st_1, [
+ ]))
+ st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_5, [
+ ]))
+ st_4._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_6, [
+ ]))
+ st_5._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_7, [
+ ]))
+ st_6._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_8, [
+ ]))
+ st_7._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_9, [
+ ]))
+ st_8._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_10, [
+ ]))
+ st_9._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_11, [
+ ]))
+ st_10._set_transitionSet(transitions)
+ transitions = []
+ st_11._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+CTD_ANON_3._Automaton = _BuildAutomaton_5()
+
+
+
+
+CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filter'), _ImportedBinding__pbbase.FilterType, scope=CTD_ANON_4, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 317, 8)))
+
+def _BuildAutomaton_6 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_6
+ del _BuildAutomaton_6
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ states = []
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filter')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 317, 8))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ transitions = []
+ transitions.append(fac.Transition(st_0, [
+ ]))
+ st_0._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+CTD_ANON_4._Automaton = _BuildAutomaton_6()
+
+
+
+
+AlignmentSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Aligner'), pyxb.binding.datatypes.anyType, scope=AlignmentSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 125, 5)))
+
+def _BuildAutomaton_7 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_7
+ del _BuildAutomaton_7
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 125, 5))
+ counters.add(cc_1)
+ states = []
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 191, 3))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 192, 3))
+ st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_0, False))
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Aligner')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 125, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ transitions = []
+ transitions.append(fac.Transition(st_1, [
+ ]))
+ st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ st_3._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+AlignmentSetMetadataType._Automaton = _BuildAutomaton_7()
+
+
+
+
+BarcodeSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction'), pyxb.binding.datatypes.string, scope=BarcodeSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 146, 5)))
+
+def _BuildAutomaton_8 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_8
+ del _BuildAutomaton_8
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ counters.add(cc_0)
+ states = []
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 191, 3))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 192, 3))
+ st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 146, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ transitions = []
+ transitions.append(fac.Transition(st_1, [
+ ]))
+ st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ st_3._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+BarcodeSetMetadataType._Automaton = _BuildAutomaton_8()
+
+
+
+
+ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), CTD_ANON_6, scope=ContigSetMetadataType, documentation='List of contigs in a ContigSet', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 52, 1)))
+
+ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Organism'), pyxb.binding.datatypes.string, scope=ContigSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 167, 5)))
+
+ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Ploidy'), pyxb.binding.datatypes.string, scope=ContigSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 168, 5)))
+
+def _BuildAutomaton_9 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_9
+ del _BuildAutomaton_9
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 167, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 168, 5))
+ counters.add(cc_2)
+ states = []
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 191, 3))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 192, 3))
+ st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Organism')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 167, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Ploidy')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 168, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Contigs')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 169, 5))
+ st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_5)
+ transitions = []
+ transitions.append(fac.Transition(st_1, [
+ ]))
+ st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ transitions.append(fac.Transition(st_5, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ transitions.append(fac.Transition(st_5, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_5, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_5, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_4._set_transitionSet(transitions)
+ transitions = []
+ st_5._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+ContigSetMetadataType._Automaton = _BuildAutomaton_9()
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), CTD_ANON, scope=CTD_ANON_, documentation='Part of the RunResources; specifies a ChipLayout which is compatible with the collection protocols defined on the plate', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 11, 1)))
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, scope=CTD_ANON_, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1)))
-def _BuildAutomaton_ ():
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 196, 6)))
+
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 197, 6)))
+
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 198, 6)))
+
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ParentTool'), _ImportedBinding__pbbase.BaseEntityType, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 199, 6)))
+
+def _BuildAutomaton_10 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_
- del _BuildAutomaton_
+ global _BuildAutomaton_10
+ del _BuildAutomaton_10
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 35, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 196, 6))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 197, 6))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 198, 6))
+ counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 199, 6))
+ counters.add(cc_3)
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 34, 4))
+ final_update.add(fac.UpdateInstruction(cc_0, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 196, 6))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Validation')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 35, 4))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 197, 6))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 198, 6))
+ st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ParentTool')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 199, 6))
+ st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
transitions = []
transitions.append(fac.Transition(st_0, [
- ]))
+ fac.UpdateInstruction(cc_0, True) ]))
transitions.append(fac.Transition(st_1, [
- ]))
+ fac.UpdateInstruction(cc_0, False) ]))
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, True) ]))
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
st_1._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_._Automaton = _BuildAutomaton_()
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_3._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, True, containing_state=None)
+CTD_ANON_5._Automaton = _BuildAutomaton_10()
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'EstimatedTotalRunTime'), CTD_ANON_3, scope=CTD_ANON_2, documentation='The total amount of time the run is estimated to require. A confidence value (defaulted to 90%) indicates the degree of certainty associated with the estimate', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 51, 1)))
+ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections'), _ImportedBinding__pbmeta.CTD_ANON_, scope=ReadSetMetadataType, documentation='A set of acquisition definitions', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 20, 1)))
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RequiredTips'), CTD_ANON_6, scope=CTD_ANON_2, documentation='Part of the RunResources; specifies the required number of tips via two attributes, Left and Right', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 120, 1)))
+ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats'), CTD_ANON_3, scope=ReadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 258, 5)))
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbpn, 'SequencingKit'), _ImportedBinding__pbrk.SupplyKitSequencing, scope=CTD_ANON_2, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioPartNumbers.xsd', 14, 1)))
+ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples'), _ImportedBinding__pbsample.CTD_ANON_3, scope=ReadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 134, 1)))
-def _BuildAutomaton_2 ():
+def _BuildAutomaton_11 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_2
- del _BuildAutomaton_2
+ global _BuildAutomaton_11
+ del _BuildAutomaton_11
import pyxb.utils.fac as fac
counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 256, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 257, 5))
+ counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 258, 5))
+ counters.add(cc_3)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbpn, 'SequencingKit')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 45, 4))
+ symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 191, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RequiredTips')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 46, 4))
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 192, 3))
st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EstimatedTotalRunTime')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 47, 4))
+ final_update.add(fac.UpdateInstruction(cc_0, False))
+ symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 256, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 257, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 258, 5))
+ st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_5)
transitions = []
transitions.append(fac.Transition(st_1, [
]))
@@ -1335,338 +2405,710 @@ def _BuildAutomaton_2 ():
transitions = []
transitions.append(fac.Transition(st_2, [
]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ transitions.append(fac.Transition(st_5, [
+ ]))
st_1._set_transitionSet(transitions)
transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ transitions.append(fac.Transition(st_5, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_5, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_5, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_4._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_5, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_5._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_2._Automaton = _BuildAutomaton_2()
+ReadSetMetadataType._Automaton = _BuildAutomaton_11()
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, scope=CTD_ANON_3, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1)))
+SubreadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength'), pyxb.binding.datatypes.int, scope=SubreadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 296, 5)))
-def _BuildAutomaton_3 ():
+SubreadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality'), pyxb.binding.datatypes.float, scope=SubreadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 297, 5)))
+
+def _BuildAutomaton_12 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_3
- del _BuildAutomaton_3
+ global _BuildAutomaton_12
+ del _BuildAutomaton_12
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 57, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
counters.add(cc_0)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Validation')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 57, 4))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 191, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 192, 3))
+ st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 193, 3))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 296, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 297, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ ]))
st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_3._Automaton = _BuildAutomaton_3()
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ st_4._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+SubreadSetMetadataType._Automaton = _BuildAutomaton_12()
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExperimentContainer'), ExperimentContainerType, scope=CTD_ANON_4, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 100, 4)))
+CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contig'), CTD_ANON_7, scope=CTD_ANON_6, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 60, 6)))
-def _BuildAutomaton_4 ():
+def _BuildAutomaton_13 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_4
- del _BuildAutomaton_4
+ global _BuildAutomaton_13
+ del _BuildAutomaton_13
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 101, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 60, 6))
+ counters.add(cc_1)
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExperimentContainer')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 100, 4))
+ final_update.add(fac.UpdateInstruction(cc_0, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.WildcardUse(pyxb.binding.content.Wildcard(process_contents=pyxb.binding.content.Wildcard.PC_strict, namespace_constraint=pyxb.binding.content.Wildcard.NC_any), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 101, 4))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Contig')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 60, 6))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
+ transitions.append(fac.Transition(st_0, [
+ fac.UpdateInstruction(cc_0, True) ]))
transitions.append(fac.Transition(st_1, [
- ]))
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, True) ]))
+ fac.UpdateInstruction(cc_1, True) ]))
st_1._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_4._Automaton = _BuildAutomaton_4()
-
+ return fac.Automaton(states, counters, True, containing_state=None)
+CTD_ANON_6._Automaton = _BuildAutomaton_13()
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, scope=CTD_ANON_5, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1)))
-def _BuildAutomaton_5 ():
+def _BuildAutomaton_14 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_5
- del _BuildAutomaton_5
+ global _BuildAutomaton_14
+ del _BuildAutomaton_14
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 115, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Validation')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 115, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_0)
+ transitions = []
+ transitions.append(fac.Transition(st_0, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ st_0._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, True, containing_state=None)
+CTD_ANON_7._Automaton = _BuildAutomaton_14()
+
+
+
+
+DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources'), _ImportedBinding__pbbase.CTD_ANON_4, scope=DataSetType, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 256, 1)))
+
+DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filters'), CTD_ANON_, scope=DataSetType, documentation='The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5)))
+
+DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSets'), CTD_ANON_2, scope=DataSetType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5)))
+
+def _BuildAutomaton_15 ():
+ # Remove this helper function from the namespace after it is invoked
+ global _BuildAutomaton_15
+ del _BuildAutomaton_15
+ import pyxb.utils.fac as fac
+
+ counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
+ counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
+ states = []
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ transitions = []
+ transitions.append(fac.Transition(st_0, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_5._Automaton = _BuildAutomaton_5()
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ st_3._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+DataSetType._Automaton = _BuildAutomaton_15()
-CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, scope=CTD_ANON_6, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1)))
+SubsetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers'), _ImportedBinding__pbbase.CTD_ANON_3, scope=SubsetType, documentation='Pointer list to UniqueIds in the system', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 222, 1)))
-def _BuildAutomaton_6 ():
+SubsetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filters'), CTD_ANON_4, scope=SubsetType, documentation='The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 311, 5)))
+
+def _BuildAutomaton_16 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_6
- del _BuildAutomaton_6
+ global _BuildAutomaton_16
+ del _BuildAutomaton_16
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 126, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 311, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 321, 5))
+ counters.add(cc_2)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Validation')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 126, 4))
+ symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 311, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 321, 5))
+ st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ st_2._set_transitionSet(transitions)
return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_6._Automaton = _BuildAutomaton_6()
-
+SubsetType._Automaton = _BuildAutomaton_16()
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CompatibleChipLayouts'), CTD_ANON_, scope=CTD_ANON_7, documentation='A set of Chip Layouts deemed compatible with the current plate', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 28, 1)))
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CompatibleSequencingKits'), CTD_ANON_2, scope=CTD_ANON_7, documentation='A set of reagent kits deemed compatible with the current plate', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 39, 1)))
+CTD_ANON_8._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), DataSetMetadataType, scope=CTD_ANON_8, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 46, 6)))
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, scope=CTD_ANON_7, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1)))
-
-def _BuildAutomaton_7 ():
+def _BuildAutomaton_17 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_7
- del _BuildAutomaton_7
+ global _BuildAutomaton_17
+ del _BuildAutomaton_17
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 140, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CompatibleSequencingKits')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 138, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CompatibleChipLayouts')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 139, 4))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Validation')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 140, 4))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 46, 6))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
- ]))
+ fac.UpdateInstruction(cc_0, True) ]))
transitions.append(fac.Transition(st_1, [
- ]))
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_2, [
]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
st_1._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, True) ]))
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ st_4._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_7._Automaton = _BuildAutomaton_7()
+CTD_ANON_8._Automaton = _BuildAutomaton_17()
-CTD_ANON_8._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, scope=CTD_ANON_8, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1)))
+AlignmentSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), AlignmentSetMetadataType, scope=AlignmentSetType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 137, 5)))
-def _BuildAutomaton_8 ():
+def _BuildAutomaton_18 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_8
- del _BuildAutomaton_8
+ global _BuildAutomaton_18
+ del _BuildAutomaton_18
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 150, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 137, 5))
+ counters.add(cc_3)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Validation')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 150, 4))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 137, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_8._Automaton = _BuildAutomaton_8()
-
-
-
-
-CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Run'), RunType, scope=CTD_ANON_9, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 276, 8)))
-
-def _BuildAutomaton_9 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_9
- del _BuildAutomaton_9
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Run')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 276, 8))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
transitions = []
- transitions.append(fac.Transition(st_0, [
+ transitions.append(fac.Transition(st_2, [
]))
- st_0._set_transitionSet(transitions)
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_4._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_9._Automaton = _BuildAutomaton_9()
+AlignmentSetType._Automaton = _BuildAutomaton_18()
-CTD_ANON_10._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbds, 'DataSet'), _ImportedBinding__pbds.DataSetType, scope=CTD_ANON_10, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDatasets.xsd', 81, 1)))
+BarcodeSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), BarcodeSetMetadataType, scope=BarcodeSetType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 158, 5)))
-def _BuildAutomaton_10 ():
+def _BuildAutomaton_19 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_10
- del _BuildAutomaton_10
+ global _BuildAutomaton_19
+ del _BuildAutomaton_19
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 286, 8))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbds, 'DataSet')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 286, 8))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 158, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_10._Automaton = _BuildAutomaton_10()
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ st_4._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+BarcodeSetType._Automaton = _BuildAutomaton_19()
-CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvent'), _ImportedBinding__pbbase.RecordedEventType, scope=CTD_ANON_11, documentation="Journal of metrics, system events, or alarms that were generated during this container's lifetime", location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 296, 8)))
+ContigSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), ContigSetMetadataType, scope=ContigSetType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 181, 5)))
-def _BuildAutomaton_11 ():
+def _BuildAutomaton_20 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_11
- del _BuildAutomaton_11
+ global _BuildAutomaton_20
+ del _BuildAutomaton_20
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 296, 8))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvent')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 296, 8))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 181, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_11._Automaton = _BuildAutomaton_11()
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ st_4._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+ContigSetType._Automaton = _BuildAutomaton_20()
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), _ImportedBinding__pbsample.BioSampleType, scope=CTD_ANON_12, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 307, 8)))
+ReadSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), ReadSetMetadataType, scope=ReadSetType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5)))
-def _BuildAutomaton_12 ():
+def _BuildAutomaton_21 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_12
- del _BuildAutomaton_12
+ global _BuildAutomaton_21
+ del _BuildAutomaton_21
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 307, 8))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5))
+ counters.add(cc_3)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSample')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 307, 8))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_12._Automaton = _BuildAutomaton_12()
-
-
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_4._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+ReadSetType._Automaton = _BuildAutomaton_21()
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Output'), _ImportedBinding__pbbase.InputOutputDataType, scope=CTD_ANON_13, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 65, 1)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSets'), CTD_ANON_17, scope=CTD_ANON_13, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 412, 1)))
-def _BuildAutomaton_13 ():
+def _BuildAutomaton_22 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_13
- del _BuildAutomaton_13
+ global _BuildAutomaton_22
+ del _BuildAutomaton_22
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 333, 8))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 334, 8))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 137, 5))
+ counters.add(cc_3)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Output')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 333, 8))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SubreadSets')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 334, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 137, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
@@ -1674,441 +3116,549 @@ def _BuildAutomaton_13 ():
fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
st_1._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_13._Automaton = _BuildAutomaton_13()
-
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_4._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+CTD_ANON_9._Automaton = _BuildAutomaton_22()
-CTD_ANON_14._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Input'), _ImportedBinding__pbbase.InputOutputDataType, scope=CTD_ANON_14, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 64, 1)))
-def _BuildAutomaton_14 ():
+def _BuildAutomaton_23 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_14
- del _BuildAutomaton_14
+ global _BuildAutomaton_23
+ del _BuildAutomaton_23
import pyxb.utils.fac as fac
counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
+ counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Input')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 347, 8))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 158, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
- ]))
+ fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ st_4._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_14._Automaton = _BuildAutomaton_14()
-
+CTD_ANON_10._Automaton = _BuildAutomaton_23()
-CTD_ANON_15._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvent'), _ImportedBinding__pbbase.RecordedEventType, scope=CTD_ANON_15, documentation="Journal of metrics, system events, or alarms that were generated during this run's lifetime.\nIn the case of Primary generating the DataSet containing the sts.xml, this RecordedEvent object should be a pointer to the DataSet object generated.", location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacB [...]
-def _BuildAutomaton_15 ():
+def _BuildAutomaton_24 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_15
- del _BuildAutomaton_15
+ global _BuildAutomaton_24
+ del _BuildAutomaton_24
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 363, 8))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 137, 5))
+ counters.add(cc_3)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvent')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 363, 8))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 137, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_15._Automaton = _BuildAutomaton_15()
-
-
-
-
-CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadataRef'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_16, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 408, 4)))
-
-def _BuildAutomaton_16 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_16
- del _BuildAutomaton_16
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadataRef')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 408, 4))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
transitions = []
- transitions.append(fac.Transition(st_0, [
+ transitions.append(fac.Transition(st_2, [
]))
- st_0._set_transitionSet(transitions)
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_4._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_16._Automaton = _BuildAutomaton_16()
-
+CTD_ANON_11._Automaton = _BuildAutomaton_24()
-CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbds, 'SubreadSet'), _ImportedBinding__pbds.CTD_ANON_15, scope=CTD_ANON_17, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDatasets.xsd', 103, 1)))
-def _BuildAutomaton_17 ():
+def _BuildAutomaton_25 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_17
- del _BuildAutomaton_17
+ global _BuildAutomaton_25
+ del _BuildAutomaton_25
import pyxb.utils.fac as fac
counters = set()
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
+ counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbds, 'SubreadSet')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 415, 4))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 181, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
+ fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
+ st_0._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
]))
- st_0._set_transitionSet(transitions)
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ st_4._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_17._Automaton = _BuildAutomaton_17()
+CTD_ANON_12._Automaton = _BuildAutomaton_25()
-CTD_ANON_18._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Validation'), CTD_ANON_19, scope=CTD_ANON_18, documentation='\n A validation type which is an element/part of every other element in the schema. It is used to communicate validation issues as part of the output.\n ', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 155, 1)))
-
-def _BuildAutomaton_18 ():
+def _BuildAutomaton_26 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_18
- del _BuildAutomaton_18
+ global _BuildAutomaton_26
+ del _BuildAutomaton_26
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 72, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ counters.add(cc_1)
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5))
+ counters.add(cc_3)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Validation')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 72, 4))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_1)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_2)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_3)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
+ transitions.append(fac.Transition(st_1, [
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_18._Automaton = _BuildAutomaton_18()
-
-
-
-
-ExperimentContainerType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InvestigatorName'), pyxb.binding.datatypes.string, scope=ExperimentContainerType, documentation='An optional PI name', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 260, 5)))
-
-ExperimentContainerType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CreatedDate'), pyxb.binding.datatypes.date, scope=ExperimentContainerType, documentation='Automatically generated creation date', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 265, 5)))
-
-ExperimentContainerType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Runs'), CTD_ANON_9, scope=ExperimentContainerType, documentation='Multiple acquisitions from different instrument runs', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 270, 5)))
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ ]))
+ transitions.append(fac.Transition(st_3, [
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ st_2._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
+ st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_4._set_transitionSet(transitions)
+ return fac.Automaton(states, counters, False, containing_state=None)
+CTD_ANON_13._Automaton = _BuildAutomaton_26()
-ExperimentContainerType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSets'), CTD_ANON_10, scope=ExperimentContainerType, documentation='Pointers to various data elements associated with the acquisitions', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 280, 5)))
-ExperimentContainerType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvents'), CTD_ANON_11, scope=ExperimentContainerType, documentation="Journal of metrics, system events, or alarms that were generated during this container's lifetime", location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 290, 5)))
-ExperimentContainerType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_12, scope=ExperimentContainerType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 304, 5)))
-def _BuildAutomaton_19 ():
+def _BuildAutomaton_27 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_19
- del _BuildAutomaton_19
+ global _BuildAutomaton_27
+ del _BuildAutomaton_27
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 260, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 270, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 280, 5))
- counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 290, 5))
- counters.add(cc_4)
- cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 304, 5))
- counters.add(cc_5)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(ExperimentContainerType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(ExperimentContainerType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InvestigatorName')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 260, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(ExperimentContainerType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CreatedDate')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 265, 5))
- st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(ExperimentContainerType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Runs')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 270, 5))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(ExperimentContainerType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 280, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 181, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_4, False))
- symbol = pyxb.binding.content.ElementUse(ExperimentContainerType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvents')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 290, 5))
- st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_5)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_5, False))
- symbol = pyxb.binding.content.ElementUse(ExperimentContainerType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 304, 5))
- st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_6)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
transitions.append(fac.Transition(st_1, [
fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True) ]))
transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_1._set_transitionSet(transitions)
- transitions = []
+ ]))
transitions.append(fac.Transition(st_3, [
]))
transitions.append(fac.Transition(st_4, [
]))
- transitions.append(fac.Transition(st_5, [
- ]))
- transitions.append(fac.Transition(st_6, [
- ]))
+ st_1._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_2, [
+ fac.UpdateInstruction(cc_1, True) ]))
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
st_2._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_3, [
fac.UpdateInstruction(cc_2, True) ]))
transitions.append(fac.Transition(st_4, [
fac.UpdateInstruction(cc_2, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_2, False) ]))
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_2, False) ]))
st_3._set_transitionSet(transitions)
transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_3, False) ]))
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_3, False) ]))
st_4._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_4, True) ]))
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_4, False) ]))
- st_5._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_5, True) ]))
- st_6._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-ExperimentContainerType._Automaton = _BuildAutomaton_19()
+CTD_ANON_14._Automaton = _BuildAutomaton_27()
-AssayType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSets'), CTD_ANON_17, scope=AssayType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 412, 1)))
-
-def _BuildAutomaton_20 ():
+def _BuildAutomaton_28 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_20
- del _BuildAutomaton_20
+ global _BuildAutomaton_28
+ del _BuildAutomaton_28
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
counters.add(cc_2)
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5))
+ counters.add(cc_3)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(AssayType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(AssayType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 188, 5))
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(AssayType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 193, 5))
- st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(AssayType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SubreadSets')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 244, 5))
- st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
+ final_update = set()
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_4)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
transitions.append(fac.Transition(st_1, [
fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True) ]))
transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, False) ]))
+ ]))
transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
+ ]))
+ transitions.append(fac.Transition(st_4, [
+ ]))
st_1._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_2, True) ]))
+ fac.UpdateInstruction(cc_1, True) ]))
transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, False) ]))
+ fac.UpdateInstruction(cc_1, False) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_1, False) ]))
st_2._set_transitionSet(transitions)
transitions = []
+ transitions.append(fac.Transition(st_3, [
+ fac.UpdateInstruction(cc_2, True) ]))
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_2, False) ]))
st_3._set_transitionSet(transitions)
+ transitions = []
+ transitions.append(fac.Transition(st_4, [
+ fac.UpdateInstruction(cc_3, True) ]))
+ st_4._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-AssayType._Automaton = _BuildAutomaton_20()
-
-
-
-
-RunType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Assay'), AssayType, scope=RunType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 10, 1)))
-
-RunType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RunResources'), CTD_ANON_7, scope=RunType, documentation='This is an output field specifying the requirements for the run, e.g. number of tips, estimated run time, etc.', location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 132, 1)))
+SubreadSetType._Automaton = _BuildAutomaton_28()
-RunType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Outputs'), CTD_ANON_13, scope=RunType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 330, 5)))
-RunType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Inputs'), CTD_ANON_14, scope=RunType, location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 344, 5)))
-RunType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvents'), CTD_ANON_15, scope=RunType, documentation="Journal of metrics, system events, or alarms that were generated during this run's lifetime", location=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 357, 5)))
-def _BuildAutomaton_21 ():
+def _BuildAutomaton_29 ():
# Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_21
- del _BuildAutomaton_21
+ global _BuildAutomaton_29
+ del _BuildAutomaton_29
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 330, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 344, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 351, 5))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5))
counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 356, 5))
- counters.add(cc_4)
- cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 357, 5))
- counters.add(cc_5)
states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(RunType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioBaseDataModel.xsd', 86, 3))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(RunType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Outputs')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 330, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 230, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(RunType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Inputs')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 344, 5))
- st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ final_update.add(fac.UpdateInstruction(cc_1, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 231, 5))
+ st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(RunType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Assay')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 351, 5))
- st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ final_update.add(fac.UpdateInstruction(cc_2, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 241, 5))
+ st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
- final_update.add(fac.UpdateInstruction(cc_4, False))
- symbol = pyxb.binding.content.ElementUse(RunType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RunResources')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 356, 5))
- st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
+ final_update.add(fac.UpdateInstruction(cc_3, False))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioDatasets.xsd', 287, 5))
+ st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_5, False))
- symbol = pyxb.binding.content.ElementUse(RunType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RecordedEvents')), pyxb.utils.utility.Location('/tmp/tmp0IIPz3xsds/PacBioDataModel.xsd', 357, 5))
- st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_5)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
transitions.append(fac.Transition(st_1, [
fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True) ]))
transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, False) ]))
+ ]))
transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
+ ]))
transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_1, False) ]))
+ ]))
st_1._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_2, True) ]))
+ fac.UpdateInstruction(cc_1, True) ]))
transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, False) ]))
+ fac.UpdateInstruction(cc_1, False) ]))
transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_2, False) ]))
+ fac.UpdateInstruction(cc_1, False) ]))
st_2._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_3, True) ]))
+ fac.UpdateInstruction(cc_2, True) ]))
transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_3, False) ]))
+ fac.UpdateInstruction(cc_2, False) ]))
st_3._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_4, True) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_4, False) ]))
+ fac.UpdateInstruction(cc_3, True) ]))
st_4._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_5, True) ]))
- st_5._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-RunType._Automaton = _BuildAutomaton_21()
+ return fac.Automaton(states, counters, False, containing_state=None)
+CTD_ANON_15._Automaton = _BuildAutomaton_29()
diff --git a/pbcore/io/dataset/EntryPoints.py b/pbcore/io/dataset/EntryPoints.py
index 1f4f36d..c56495e 100755
--- a/pbcore/io/dataset/EntryPoints.py
+++ b/pbcore/io/dataset/EntryPoints.py
@@ -28,7 +28,8 @@ def createXml(args):
dset = dsTypes[args.dsType](*args.infile, strict=args.strict,
skipCounts=args.skipCounts,
generateIndices=args.generateIndices)
- dset.name = args.dsName
+ if args.dsName != '':
+ dset.name = args.dsName
if args.generateIndices:
# we generated the indices with the last open, lets capture them with
# this one:
diff --git a/pbcore/io/dataset/_pbbase.py b/pbcore/io/dataset/_pbbase.py
old mode 100755
new mode 100644
index 007ebdb..d79f080
--- a/pbcore/io/dataset/_pbbase.py
+++ b/pbcore/io/dataset/_pbbase.py
@@ -1,7 +1,7 @@
# ./_pbbase.py
# -*- coding: utf-8 -*-
# PyXB bindings for NM:304355e4be645ec0738f0143f32dd444bf98ad15
-# Generated 2015-10-20 16:54:17.009705 by PyXB version 1.2.4 using Python 2.7.6.final.0
+# Generated 2015-12-08 13:20:39.133886 by PyXB version 1.2.4 using Python 2.7.6.final.0
# Namespace http://pacificbiosciences.com/PacBioBaseDataModel.xsd [xmlns:pbbase]
from __future__ import unicode_literals
@@ -15,7 +15,7 @@ import sys
import pyxb.utils.six as _six
# Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:df41546a-7785-11e5-88f4-001a4acb6b14')
+_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:8749368c-9df1-11e5-86b0-001a4acb6b14')
# Version of PyXB used to generate the bindings
_PyXBVersion = '1.2.4'
@@ -79,7 +79,7 @@ class STD_ANON (pyxb.binding.datatypes.dateTime):
"""An atomic simple type."""
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 128, 3)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 128, 3)
_Documentation = None
STD_ANON._InitializeFacetMap()
@@ -89,7 +89,7 @@ class STD_ANON_ (pyxb.binding.datatypes.dateTime):
"""An atomic simple type."""
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 136, 3)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 136, 3)
_Documentation = None
STD_ANON_._InitializeFacetMap()
@@ -99,7 +99,7 @@ class STD_ANON_2 (pyxb.binding.datatypes.ID):
"""An atomic simple type."""
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 151, 5)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 151, 5)
_Documentation = None
STD_ANON_2._CF_pattern = pyxb.binding.facets.CF_pattern()
STD_ANON_2._CF_pattern.addPattern(pattern='[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}')
@@ -111,7 +111,7 @@ class SupportedAcquisitionStates (pyxb.binding.datatypes.string, pyxb.binding.ba
"""An atomic simple type."""
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedAcquisitionStates')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 630, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 638, 1)
_Documentation = None
SupportedAcquisitionStates._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedAcquisitionStates, enum_prefix=None)
SupportedAcquisitionStates.Ready = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Ready', tag='Ready')
@@ -147,7 +147,7 @@ class SupportedDataTypes (pyxb.binding.datatypes.string, pyxb.binding.basis.enum
"""An atomic simple type."""
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedDataTypes')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 658, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 666, 1)
_Documentation = None
SupportedDataTypes._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedDataTypes, enum_prefix=None)
SupportedDataTypes.Int16 = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int16', tag='Int16')
@@ -194,7 +194,7 @@ class SupportedNucleotides (pyxb.binding.datatypes.string, pyxb.binding.basis.en
"""An atomic simple type."""
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedNucleotides')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 697, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 705, 1)
_Documentation = None
SupportedNucleotides._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedNucleotides, enum_prefix=None)
SupportedNucleotides.A = SupportedNucleotides._CF_enumeration.addEnumeration(unicode_value='A', tag='A')
@@ -210,7 +210,7 @@ class SupportedRunStates (pyxb.binding.datatypes.string, pyxb.binding.basis.enum
"""An atomic simple type."""
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedRunStates')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 705, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 713, 1)
_Documentation = None
SupportedRunStates._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedRunStates, enum_prefix=None)
SupportedRunStates.Ready = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Ready', tag='Ready')
@@ -235,13 +235,13 @@ class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 14, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 14, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Values uses Python identifier Values
- __Values = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Values'), 'Values', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_httppacificbiosciences_comPacBioBaseDataModel_xsdValues', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 16, 8), )
+ __Values = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Values'), 'Values', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_httppacificbiosciences_comPacBioBaseDataModel_xsdValues', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 16, 8), )
Values = property(__Values.value, __Values.set, None, None)
@@ -249,8 +249,8 @@ class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
# Attribute NumberFilterBins uses Python identifier NumberFilterBins
__NumberFilterBins = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'NumberFilterBins'), 'NumberFilterBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_NumberFilterBins', pyxb.binding.datatypes.int, required=True)
- __NumberFilterBins._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 29, 7)
- __NumberFilterBins._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 29, 7)
+ __NumberFilterBins._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 29, 7)
+ __NumberFilterBins._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 29, 7)
NumberFilterBins = property(__NumberFilterBins.value, __NumberFilterBins.set, None, 'number of bins describing the spectrum, green to red')
@@ -270,13 +270,13 @@ class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 17, 9)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 17, 9)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Value uses Python identifier Value
- __Value = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON__httppacificbiosciences_comPacBioBaseDataModel_xsdValue', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 19, 11), )
+ __Value = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON__httppacificbiosciences_comPacBioBaseDataModel_xsdValue', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 19, 11), )
Value = property(__Value.value, __Value.set, None, 'There should be as many values as specified in the Number of Filter Bins attribute.\nEach value is a probability, in the range of [0, 1].')
@@ -297,13 +297,13 @@ class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 87, 4)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 87, 4)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExtensionElement uses Python identifier ExtensionElement
- __ExtensionElement = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), 'ExtensionElement', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioBaseDataModel_xsdExtensionElement', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 728, 1), )
+ __ExtensionElement = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), 'ExtensionElement', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioBaseDataModel_xsdExtensionElement', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 736, 1), )
ExtensionElement = property(__ExtensionElement.value, __ExtensionElement.set, None, 'A generic element whose contents are undefined at the schema level. This is used to extend the data model.')
@@ -324,13 +324,13 @@ class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 226, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 226, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataPointer uses Python identifier DataPointer
- __DataPointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataPointer'), 'DataPointer', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioBaseDataModel_xsdDataPointer', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 228, 4), )
+ __DataPointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataPointer'), 'DataPointer', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioBaseDataModel_xsdDataPointer', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 228, 4), )
DataPointer = property(__DataPointer.value, __DataPointer.set, None, None)
@@ -351,13 +351,13 @@ class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 260, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 260, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResource uses Python identifier ExternalResource
- __ExternalResource = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), 'ExternalResource', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResource', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 750, 1), )
+ __ExternalResource = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), 'ExternalResource', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResource', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 758, 1), )
ExternalResource = property(__ExternalResource.value, __ExternalResource.set, None, 'for example, an output file could be the BAM file, which could be associated with multiple indices into it.')
@@ -378,13 +378,13 @@ class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 276, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 276, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}FileIndex uses Python identifier FileIndex
- __FileIndex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FileIndex'), 'FileIndex', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioBaseDataModel_xsdFileIndex', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 278, 8), )
+ __FileIndex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FileIndex'), 'FileIndex', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioBaseDataModel_xsdFileIndex', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 278, 8), )
FileIndex = property(__FileIndex.value, __FileIndex.set, None, 'e.g. index for output files, allowing one to find information in the output file')
@@ -405,13 +405,13 @@ class CTD_ANON_6 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 296, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 296, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationParameter uses Python identifier AutomationParameter
- __AutomationParameter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), 'AutomationParameter', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomationParameter', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 321, 1), )
+ __AutomationParameter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), 'AutomationParameter', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomationParameter', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 321, 1), )
AutomationParameter = property(__AutomationParameter.value, __AutomationParameter.set, None, 'One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..')
@@ -432,13 +432,13 @@ class CTD_ANON_7 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 407, 11)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 407, 11)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Analog uses Python identifier Analog
- __Analog = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analog'), 'Analog', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalog', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 409, 13), )
+ __Analog = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analog'), 'Analog', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalog', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 409, 13), )
Analog = property(__Analog.value, __Analog.set, None, None)
@@ -459,13 +459,13 @@ class CTD_ANON_8 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 426, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 426, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ChemistryConfig uses Python identifier ChemistryConfig
- __ChemistryConfig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), 'ChemistryConfig', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_8_httppacificbiosciences_comPacBioBaseDataModel_xsdChemistryConfig', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 789, 1), )
+ __ChemistryConfig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), 'ChemistryConfig', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_8_httppacificbiosciences_comPacBioBaseDataModel_xsdChemistryConfig', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 797, 1), )
ChemistryConfig = property(__ChemistryConfig.value, __ChemistryConfig.set, None, None)
@@ -486,13 +486,13 @@ class CTD_ANON_9 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 440, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 440, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Analog uses Python identifier Analog
- __Analog = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analog'), 'Analog', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalog', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 442, 8), )
+ __Analog = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analog'), 'Analog', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalog', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 442, 8), )
Analog = property(__Analog.value, __Analog.set, None, None)
@@ -506,20 +506,75 @@ class CTD_ANON_9 (pyxb.binding.basis.complexTypeDefinition):
-# Complex type [anonymous] with content type ELEMENT_ONLY
+# Complex type [anonymous] with content type EMPTY
class CTD_ANON_10 (pyxb.binding.basis.complexTypeDefinition):
+ """Complex type [anonymous] with content type EMPTY"""
+ _TypeDefinition = None
+ _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_EMPTY
+ _Abstract = False
+ _ExpandedName = None
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 452, 6)
+ _ElementMap = {}
+ _AttributeMap = {}
+ # Base type is pyxb.binding.datatypes.anyType
+
+ # Attribute SNR_A uses Python identifier SNR_A
+ __SNR_A = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SNR_A'), 'SNR_A', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_10_SNR_A', pyxb.binding.datatypes.float, required=True)
+ __SNR_A._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 453, 7)
+ __SNR_A._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 453, 7)
+
+ SNR_A = property(__SNR_A.value, __SNR_A.set, None, None)
+
+
+ # Attribute SNR_C uses Python identifier SNR_C
+ __SNR_C = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SNR_C'), 'SNR_C', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_10_SNR_C', pyxb.binding.datatypes.float, required=True)
+ __SNR_C._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 454, 7)
+ __SNR_C._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 454, 7)
+
+ SNR_C = property(__SNR_C.value, __SNR_C.set, None, None)
+
+
+ # Attribute SNR_G uses Python identifier SNR_G
+ __SNR_G = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SNR_G'), 'SNR_G', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_10_SNR_G', pyxb.binding.datatypes.float, required=True)
+ __SNR_G._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 455, 7)
+ __SNR_G._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 455, 7)
+
+ SNR_G = property(__SNR_G.value, __SNR_G.set, None, None)
+
+
+ # Attribute SNR_T uses Python identifier SNR_T
+ __SNR_T = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SNR_T'), 'SNR_T', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_10_SNR_T', pyxb.binding.datatypes.float, required=True)
+ __SNR_T._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 456, 7)
+ __SNR_T._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 456, 7)
+
+ SNR_T = property(__SNR_T.value, __SNR_T.set, None, None)
+
+ _ElementMap.update({
+
+ })
+ _AttributeMap.update({
+ __SNR_A.name() : __SNR_A,
+ __SNR_C.name() : __SNR_C,
+ __SNR_G.name() : __SNR_G,
+ __SNR_T.name() : __SNR_T
+ })
+
+
+
+# Complex type [anonymous] with content type ELEMENT_ONLY
+class CTD_ANON_11 (pyxb.binding.basis.complexTypeDefinition):
"""Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 469, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 477, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinCount uses Python identifier BinCount
- __BinCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), 'BinCount', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_10_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCount', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 471, 8), )
+ __BinCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), 'BinCount', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCount', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 479, 8), )
BinCount = property(__BinCount.value, __BinCount.set, None, None)
@@ -534,19 +589,19 @@ class CTD_ANON_10 (pyxb.binding.basis.complexTypeDefinition):
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_11 (pyxb.binding.basis.complexTypeDefinition):
+class CTD_ANON_12 (pyxb.binding.basis.complexTypeDefinition):
"""Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 495, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 503, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinCount uses Python identifier BinCount
- __BinCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), 'BinCount', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCount', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 497, 8), )
+ __BinCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), 'BinCount', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCount', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 505, 8), )
BinCount = property(__BinCount.value, __BinCount.set, None, None)
@@ -561,19 +616,19 @@ class CTD_ANON_11 (pyxb.binding.basis.complexTypeDefinition):
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_12 (pyxb.binding.basis.complexTypeDefinition):
+class CTD_ANON_13 (pyxb.binding.basis.complexTypeDefinition):
"""Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 503, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 511, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinLabel uses Python identifier BinLabel
- __BinLabel = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinLabel'), 'BinLabel', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioBaseDataModel_xsdBinLabel', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 505, 8), )
+ __BinLabel = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinLabel'), 'BinLabel', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioBaseDataModel_xsdBinLabel', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 513, 8), )
BinLabel = property(__BinLabel.value, __BinLabel.set, None, None)
@@ -588,19 +643,19 @@ class CTD_ANON_12 (pyxb.binding.basis.complexTypeDefinition):
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_13 (pyxb.binding.basis.complexTypeDefinition):
+class CTD_ANON_14 (pyxb.binding.basis.complexTypeDefinition):
"""Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 525, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 533, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Val uses Python identifier Val
- __Val = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Val'), 'Val', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioBaseDataModel_xsdVal', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 527, 8), )
+ __Val = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Val'), 'Val', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_14_httppacificbiosciences_comPacBioBaseDataModel_xsdVal', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 535, 8), )
Val = property(__Val.value, __Val.set, None, None)
@@ -621,13 +676,13 @@ class UserDefinedFieldsType (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFieldsType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 721, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 729, 1)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntities uses Python identifier DataEntities
- __DataEntities = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataEntities'), 'DataEntities', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_UserDefinedFieldsType_httppacificbiosciences_comPacBioBaseDataModel_xsdDataEntities', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 723, 3), )
+ __DataEntities = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataEntities'), 'DataEntities', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_UserDefinedFieldsType_httppacificbiosciences_comPacBioBaseDataModel_xsdDataEntities', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 731, 3), )
DataEntities = property(__DataEntities.value, __DataEntities.set, None, None)
@@ -648,13 +703,13 @@ class FilterType (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'FilterType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 733, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 741, 1)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Properties uses Python identifier Properties
- __Properties = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Properties'), 'Properties', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_FilterType_httppacificbiosciences_comPacBioBaseDataModel_xsdProperties', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 735, 3), )
+ __Properties = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Properties'), 'Properties', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_FilterType_httppacificbiosciences_comPacBioBaseDataModel_xsdProperties', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 743, 3), )
Properties = property(__Properties.value, __Properties.set, None, None)
@@ -669,19 +724,19 @@ Namespace.addCategoryObject('typeBinding', 'FilterType', FilterType)
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_14 (pyxb.binding.basis.complexTypeDefinition):
+class CTD_ANON_15 (pyxb.binding.basis.complexTypeDefinition):
"""Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 736, 4)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 744, 4)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Property uses Python identifier Property
- __Property = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Property'), 'Property', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_14_httppacificbiosciences_comPacBioBaseDataModel_xsdProperty', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 738, 6), )
+ __Property = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Property'), 'Property', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_15_httppacificbiosciences_comPacBioBaseDataModel_xsdProperty', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 746, 6), )
Property = property(__Property.value, __Property.set, None, None)
@@ -696,37 +751,37 @@ class CTD_ANON_14 (pyxb.binding.basis.complexTypeDefinition):
# Complex type [anonymous] with content type EMPTY
-class CTD_ANON_15 (pyxb.binding.basis.complexTypeDefinition):
+class CTD_ANON_16 (pyxb.binding.basis.complexTypeDefinition):
"""Complex type [anonymous] with content type EMPTY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_EMPTY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 739, 7)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 747, 7)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Attribute Name uses Python identifier Name
- __Name = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Name'), 'Name', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_15_Name', pyxb.binding.datatypes.string, required=True)
- __Name._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 740, 8)
- __Name._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 740, 8)
+ __Name = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Name'), 'Name', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_16_Name', pyxb.binding.datatypes.string, required=True)
+ __Name._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 748, 8)
+ __Name._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 748, 8)
Name = property(__Name.value, __Name.set, None, None)
# Attribute Value uses Python identifier Value
- __Value = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_15_Value', pyxb.binding.datatypes.string, required=True)
- __Value._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 741, 8)
- __Value._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 741, 8)
+ __Value = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_16_Value', pyxb.binding.datatypes.string, required=True)
+ __Value._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 749, 8)
+ __Value._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 749, 8)
Value = property(__Value.value, __Value.set, None, None)
# Attribute Operator uses Python identifier Operator
- __Operator = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Operator'), 'Operator', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_15_Operator', pyxb.binding.datatypes.string, required=True)
- __Operator._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 742, 8)
- __Operator._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 742, 8)
+ __Operator = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Operator'), 'Operator', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_16_Operator', pyxb.binding.datatypes.string, required=True)
+ __Operator._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 750, 8)
+ __Operator._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 750, 8)
Operator = property(__Operator.value, __Operator.set, None, None)
@@ -742,19 +797,19 @@ class CTD_ANON_15 (pyxb.binding.basis.complexTypeDefinition):
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_16 (pyxb.binding.basis.complexTypeDefinition):
+class CTD_ANON_17 (pyxb.binding.basis.complexTypeDefinition):
"""Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 761, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 769, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Items uses Python identifier Items
- __Items = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Items'), 'Items', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioBaseDataModel_xsdItems', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 763, 4), )
+ __Items = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Items'), 'Items', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioBaseDataModel_xsdItems', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 771, 4), )
Items = property(__Items.value, __Items.set, None, None)
@@ -769,19 +824,19 @@ class CTD_ANON_16 (pyxb.binding.basis.complexTypeDefinition):
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_17 (pyxb.binding.basis.complexTypeDefinition):
+class CTD_ANON_18 (pyxb.binding.basis.complexTypeDefinition):
"""Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 764, 5)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 772, 5)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Item uses Python identifier Item
- __Item = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Item'), 'Item', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioBaseDataModel_xsdItem', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 766, 7), )
+ __Item = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Item'), 'Item', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_18_httppacificbiosciences_comPacBioBaseDataModel_xsdItem', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 774, 7), )
Item = property(__Item.value, __Item.set, None, None)
@@ -802,13 +857,13 @@ class MapType (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'MapType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 777, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 785, 1)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}KeyValueMap uses Python identifier KeyValueMap
- __KeyValueMap = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), 'KeyValueMap', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapType_httppacificbiosciences_comPacBioBaseDataModel_xsdKeyValueMap', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 760, 1), )
+ __KeyValueMap = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), 'KeyValueMap', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapType_httppacificbiosciences_comPacBioBaseDataModel_xsdKeyValueMap', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 768, 1), )
KeyValueMap = property(__KeyValueMap.value, __KeyValueMap.set, None, None)
@@ -829,27 +884,27 @@ class MapItemType (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'MapItemType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 782, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 790, 1)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Key uses Python identifier Key
- __Key = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Key'), 'Key', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdKey', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 784, 3), )
+ __Key = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Key'), 'Key', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdKey', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 792, 3), )
Key = property(__Key.value, __Key.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Value uses Python identifier Value
- __Value = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdValue', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 785, 3), )
+ __Value = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdValue', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 793, 3), )
Value = property(__Value.value, __Value.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Description uses Python identifier Description
- __Description = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Description'), 'Description', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdDescription', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 786, 3), )
+ __Description = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Description'), 'Description', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdDescription', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 794, 3), )
Description = property(__Description.value, __Description.set, None, None)
@@ -872,13 +927,13 @@ class BaseEntityType (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BaseEntityType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 81, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 81, 1)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions uses Python identifier Extensions
- __Extensions = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Extensions'), 'Extensions', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_httppacificbiosciences_comPacBioBaseDataModel_xsdExtensions', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3), )
+ __Extensions = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Extensions'), 'Extensions', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_httppacificbiosciences_comPacBioBaseDataModel_xsdExtensions', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3), )
Extensions = property(__Extensions.value, __Extensions.set, None, None)
@@ -886,64 +941,64 @@ class BaseEntityType (pyxb.binding.basis.complexTypeDefinition):
# Attribute Name uses Python identifier Name
__Name = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Name'), 'Name', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Name', pyxb.binding.datatypes.string)
- __Name._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 94, 2)
- __Name._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 94, 2)
+ __Name._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 94, 2)
+ __Name._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 94, 2)
Name = property(__Name.value, __Name.set, None, 'A short text identifier; uniqueness not necessary')
# Attribute Description uses Python identifier Description
__Description = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Description'), 'Description', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Description', pyxb.binding.datatypes.string)
- __Description._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 99, 2)
- __Description._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 99, 2)
+ __Description._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 99, 2)
+ __Description._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 99, 2)
Description = property(__Description.value, __Description.set, None, 'A long text description of the object')
# Attribute Tags uses Python identifier Tags
__Tags = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Tags'), 'Tags', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Tags', pyxb.binding.datatypes.string)
- __Tags._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 104, 2)
- __Tags._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 104, 2)
+ __Tags._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 104, 2)
+ __Tags._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 104, 2)
Tags = property(__Tags.value, __Tags.set, None, 'A set of keywords assigned to the object to help describe it and allow it to be found via search')
# Attribute Format uses Python identifier Format
__Format = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Format'), 'Format', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Format', pyxb.binding.datatypes.string)
- __Format._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 109, 2)
- __Format._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 109, 2)
+ __Format._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 109, 2)
+ __Format._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 109, 2)
Format = property(__Format.value, __Format.set, None, 'Optional, but recommended. The MIME-Type of the referenced file. See http://www.iana.org/assignments/media-types/media-types.xhtml for examples')
# Attribute ResourceId uses Python identifier ResourceId
__ResourceId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ResourceId'), 'ResourceId', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_ResourceId', pyxb.binding.datatypes.anyURI)
- __ResourceId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 114, 2)
- __ResourceId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 114, 2)
+ __ResourceId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 114, 2)
+ __ResourceId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 114, 2)
ResourceId = property(__ResourceId.value, __ResourceId.set, None, 'A uniform resource identifier used to identify a "web" resource. e.g. svc://run/acquisition/alignment/gridding')
# Attribute Version uses Python identifier Version
__Version = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Version'), 'Version', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Version', pyxb.binding.datatypes.string)
- __Version._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 119, 2)
- __Version._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 119, 2)
+ __Version._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 119, 2)
+ __Version._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 119, 2)
Version = property(__Version.value, __Version.set, None, 'An optional identifier denoting the revision of this particular entity')
# Attribute CreatedAt uses Python identifier CreatedAt
__CreatedAt = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'CreatedAt'), 'CreatedAt', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_CreatedAt', STD_ANON)
- __CreatedAt._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 124, 2)
- __CreatedAt._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 124, 2)
+ __CreatedAt._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 124, 2)
+ __CreatedAt._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 124, 2)
CreatedAt = property(__CreatedAt.value, __CreatedAt.set, None, 'Timestamp designating the creation of this object, relative to UTC; millisecond precision is expected.')
# Attribute ModifiedAt uses Python identifier ModifiedAt
__ModifiedAt = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ModifiedAt'), 'ModifiedAt', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_ModifiedAt', STD_ANON_)
- __ModifiedAt._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 132, 2)
- __ModifiedAt._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 132, 2)
+ __ModifiedAt._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 132, 2)
+ __ModifiedAt._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 132, 2)
ModifiedAt = property(__ModifiedAt.value, __ModifiedAt.set, None, 'Timestamp designating the modification of this object, relative to UTC; millisecond precision is expected.')
@@ -970,41 +1025,41 @@ class AnalogType (BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AnalogType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 6, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 6, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Spectrum uses Python identifier Spectrum
- __Spectrum = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Spectrum'), 'Spectrum', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdSpectrum', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 10, 5), )
+ __Spectrum = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Spectrum'), 'Spectrum', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdSpectrum', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 10, 5), )
Spectrum = property(__Spectrum.value, __Spectrum.set, None, 'A vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RelativeAmplitude uses Python identifier RelativeAmplitude
- __RelativeAmplitude = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude'), 'RelativeAmplitude', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdRelativeAmplitude', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 36, 5), )
+ __RelativeAmplitude = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude'), 'RelativeAmplitude', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdRelativeAmplitude', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 36, 5), )
RelativeAmplitude = property(__RelativeAmplitude.value, __RelativeAmplitude.set, None, 'Relative intensity of emission vs. a reference analog using standardized metrology \u2013 e.g., relative to the amplitude of the \u201c542\u201d analog as measured by the mean DWS pkMid on the Astro instrument.')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IntraPulseXsnCV uses Python identifier IntraPulseXsnCV
- __IntraPulseXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV'), 'IntraPulseXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdIntraPulseXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 41, 5), )
+ __IntraPulseXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV'), 'IntraPulseXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdIntraPulseXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 41, 5), )
IntraPulseXsnCV = property(__IntraPulseXsnCV.value, __IntraPulseXsnCV.set, None, 'The 1-sigma fractional variation of the intra-pulse signal, independent of any Shot noise associated with that signal')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}InterPulseXsnCV uses Python identifier InterPulseXsnCV
- __InterPulseXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV'), 'InterPulseXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdInterPulseXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 46, 5), )
+ __InterPulseXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV'), 'InterPulseXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdInterPulseXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 46, 5), )
InterPulseXsnCV = property(__InterPulseXsnCV.value, __InterPulseXsnCV.set, None, 'The 1-sigma fractional variation, pulse-to-pulse, of the mean signal level (i.e., the pkMid).')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DiffusionXsnCV uses Python identifier DiffusionXsnCV
- __DiffusionXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV'), 'DiffusionXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdDiffusionXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 51, 5), )
+ __DiffusionXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV'), 'DiffusionXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdDiffusionXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 51, 5), )
DiffusionXsnCV = property(__DiffusionXsnCV.value, __DiffusionXsnCV.set, None, None)
@@ -1014,40 +1069,40 @@ class AnalogType (BaseEntityType):
# Attribute Base uses Python identifier Base
__Base = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Base'), 'Base', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_Base', SupportedNucleotides)
- __Base._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 53, 4)
- __Base._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 53, 4)
+ __Base._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 53, 4)
+ __Base._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 53, 4)
Base = property(__Base.value, __Base.set, None, 'The base label, A, C, T, or G')
# Attribute Nucleotide uses Python identifier Nucleotide
__Nucleotide = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Nucleotide'), 'Nucleotide', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_Nucleotide', pyxb.binding.datatypes.string)
- __Nucleotide._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 58, 4)
- __Nucleotide._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 58, 4)
+ __Nucleotide._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 58, 4)
+ __Nucleotide._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 58, 4)
Nucleotide = property(__Nucleotide.value, __Nucleotide.set, None, 'The type and number of nucleotides on a given analog. e.g. (dT6P)6')
# Attribute Wavelength uses Python identifier Wavelength
__Wavelength = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Wavelength'), 'Wavelength', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_Wavelength', pyxb.binding.datatypes.float)
- __Wavelength._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 63, 4)
- __Wavelength._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 63, 4)
+ __Wavelength._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 63, 4)
+ __Wavelength._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 63, 4)
Wavelength = property(__Wavelength.value, __Wavelength.set, None, 'The peak emission wavelength associated with the dye label in nm.')
# Attribute CompoundID uses Python identifier CompoundID
__CompoundID = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'CompoundID'), 'CompoundID', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_CompoundID', pyxb.binding.datatypes.string)
- __CompoundID._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 68, 4)
- __CompoundID._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 68, 4)
+ __CompoundID._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 68, 4)
+ __CompoundID._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 68, 4)
CompoundID = property(__CompoundID.value, __CompoundID.set, None, 'Identification code of the final compound. The suffix \u2018N\u2019 should be used to distinguish these values from enzyme identifiers.\te.g. 5031N')
# Attribute LotID uses Python identifier LotID
__LotID = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'LotID'), 'LotID', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_LotID', pyxb.binding.datatypes.string)
- __LotID._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 73, 4)
- __LotID._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 73, 4)
+ __LotID._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 73, 4)
+ __LotID._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 73, 4)
LotID = property(__LotID.value, __LotID.set, None, 'Identification code for the build of the final compound, written as initials/date, where date is written as YYYY-MM-DD.\te.g. js/2014-06-30')
@@ -1091,7 +1146,7 @@ class StrictEntityType (BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'StrictEntityType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 141, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 141, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1116,24 +1171,24 @@ class StrictEntityType (BaseEntityType):
# Attribute UniqueId uses Python identifier UniqueId
__UniqueId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'UniqueId'), 'UniqueId', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StrictEntityType_UniqueId', STD_ANON_2, required=True)
- __UniqueId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 147, 4)
- __UniqueId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 147, 4)
+ __UniqueId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 147, 4)
+ __UniqueId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 147, 4)
UniqueId = property(__UniqueId.value, __UniqueId.set, None, 'A unique identifier, such as a GUID - likely autogenerated')
# Attribute MetaType uses Python identifier MetaType
__MetaType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MetaType'), 'MetaType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StrictEntityType_MetaType', pyxb.binding.datatypes.string, required=True)
- __MetaType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 157, 4)
- __MetaType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 157, 4)
+ __MetaType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 157, 4)
+ __MetaType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 157, 4)
MetaType = property(__MetaType.value, __MetaType.set, None, 'Controlled Vocabulary, meant as a means to group similar entities; the type of the object, e.g. Instrument Run, Secondary Run, Assay, Sample, Barcode, Alignment File, Alarm, Exception, Metric, SystemEvent, etc.')
# Attribute TimeStampedName uses Python identifier TimeStampedName
__TimeStampedName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TimeStampedName'), 'TimeStampedName', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StrictEntityType_TimeStampedName', pyxb.binding.datatypes.string, required=True)
- __TimeStampedName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 162, 4)
- __TimeStampedName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 162, 4)
+ __TimeStampedName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 162, 4)
+ __TimeStampedName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 162, 4)
TimeStampedName = property(__TimeStampedName.value, __TimeStampedName.set, None, 'This is NOT intended to be used as a unique field. For uniqueness, use UniqueId. In order to not utilize customer provided names, this attribute may be used as an alternative means of Human Readable ID, e.g. instrumentId-Run-150304_231155')
@@ -1155,7 +1210,7 @@ class DataEntityType (BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataEntityType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 181, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 181, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1163,14 +1218,14 @@ class DataEntityType (BaseEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}EncodedValue uses Python identifier EncodedValue
- __EncodedValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue'), 'EncodedValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_httppacificbiosciences_comPacBioBaseDataModel_xsdEncodedValue', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5), )
+ __EncodedValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue'), 'EncodedValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_httppacificbiosciences_comPacBioBaseDataModel_xsdEncodedValue', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5), )
EncodedValue = property(__EncodedValue.value, __EncodedValue.set, None, 'A complex data type element, such as an image, file, binary object, etc.')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum uses Python identifier CheckSum
- __CheckSum = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CheckSum'), 'CheckSum', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_httppacificbiosciences_comPacBioBaseDataModel_xsdCheckSum', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5), )
+ __CheckSum = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CheckSum'), 'CheckSum', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_httppacificbiosciences_comPacBioBaseDataModel_xsdCheckSum', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5), )
CheckSum = property(__CheckSum.value, __CheckSum.set, None, 'small-size datum of the attached value for the purpose of detecting errors or modification which may have been introduced during its transmission or storage')
@@ -1194,32 +1249,32 @@ class DataEntityType (BaseEntityType):
# Attribute ValueDataType uses Python identifier ValueDataType
__ValueDataType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ValueDataType'), 'ValueDataType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_ValueDataType', SupportedDataTypes, unicode_default='Object')
- __ValueDataType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 199, 4)
- __ValueDataType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 199, 4)
+ __ValueDataType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 199, 4)
+ __ValueDataType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 199, 4)
ValueDataType = property(__ValueDataType.value, __ValueDataType.set, None, 'The datatype of the simple or encoded value. If not specified, a string is assumed.')
# Attribute SimpleValue uses Python identifier SimpleValue
__SimpleValue = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SimpleValue'), 'SimpleValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_SimpleValue', pyxb.binding.datatypes.anySimpleType)
- __SimpleValue._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 204, 4)
- __SimpleValue._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 204, 4)
+ __SimpleValue._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 204, 4)
+ __SimpleValue._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 204, 4)
SimpleValue = property(__SimpleValue.value, __SimpleValue.set, None, 'A simple data type element, such as a string, int, float, etc.')
# Attribute MetaType uses Python identifier MetaType
__MetaType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MetaType'), 'MetaType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_MetaType', pyxb.binding.datatypes.string)
- __MetaType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 209, 4)
- __MetaType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 209, 4)
+ __MetaType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 209, 4)
+ __MetaType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 209, 4)
MetaType = property(__MetaType.value, __MetaType.set, None, 'Controlled Vocabulary, meant as a means to group similar entities; the type of the object, e.g. Instrument Run, Secondary Run, Assay, Sample, Barcode, Alignment File, Alarm, Exception, Metric, SystemEvent, etc.')
# Attribute TimeStampedName uses Python identifier TimeStampedName
__TimeStampedName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TimeStampedName'), 'TimeStampedName', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_TimeStampedName', pyxb.binding.datatypes.string)
- __TimeStampedName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 214, 4)
- __TimeStampedName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 214, 4)
+ __TimeStampedName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 214, 4)
+ __TimeStampedName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 214, 4)
TimeStampedName = property(__TimeStampedName.value, __TimeStampedName.set, None, 'This is NOT intended to be used as a unique field. For uniqueness, use UniqueId. In order to not utilize customer provided names, this attribute may be used as an alternative means of Human Readable ID, e.g. instrumentId-Run-150304_231155')
@@ -1243,7 +1298,7 @@ class DNABarcode (BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DNABarcode')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 232, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 232, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1268,8 +1323,8 @@ class DNABarcode (BaseEntityType):
# Attribute DNASequence uses Python identifier DNASequence
__DNASequence = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DNASequence'), 'DNASequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DNABarcode_DNASequence', pyxb.binding.datatypes.anySimpleType)
- __DNASequence._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 238, 4)
- __DNASequence._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 238, 4)
+ __DNASequence._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 238, 4)
+ __DNASequence._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 238, 4)
DNASequence = property(__DNASequence.value, __DNASequence.set, None, "This is the sample's DNA barcode")
@@ -1289,7 +1344,7 @@ class AutomationType (BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AutomationType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 291, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 291, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1297,7 +1352,7 @@ class AutomationType (BaseEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationParameters uses Python identifier AutomationParameters
- __AutomationParameters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), 'AutomationParameters', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomationParameters', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 295, 5), )
+ __AutomationParameters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), 'AutomationParameters', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomationParameters', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 295, 5), )
AutomationParameters = property(__AutomationParameters.value, __AutomationParameters.set, None, None)
@@ -1321,24 +1376,24 @@ class AutomationType (BaseEntityType):
# Attribute PartNumber uses Python identifier PartNumber
__PartNumber = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartNumber'), 'PartNumber', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_PartNumber', pyxb.binding.datatypes.string)
- __PartNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 303, 4)
- __PartNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 303, 4)
+ __PartNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 303, 4)
+ __PartNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 303, 4)
PartNumber = property(__PartNumber.value, __PartNumber.set, None, 'Defines a part number, mainly for use in defining incompatibility with other PB kit PNs, if necessary')
# Attribute IsRestricted uses Python identifier IsRestricted
__IsRestricted = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsRestricted'), 'IsRestricted', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_IsRestricted', pyxb.binding.datatypes.boolean, unicode_default='false')
- __IsRestricted._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 308, 4)
- __IsRestricted._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 308, 4)
+ __IsRestricted._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 308, 4)
+ __IsRestricted._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 308, 4)
IsRestricted = property(__IsRestricted.value, __IsRestricted.set, None, 'Allows for an automation to be marked for internal use or by admin users only')
# Attribute IsObsolete uses Python identifier IsObsolete
__IsObsolete = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsObsolete'), 'IsObsolete', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_IsObsolete', pyxb.binding.datatypes.boolean, unicode_default='false')
- __IsObsolete._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 313, 4)
- __IsObsolete._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 313, 4)
+ __IsObsolete._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 313, 4)
+ __IsObsolete._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 313, 4)
IsObsolete = property(__IsObsolete.value, __IsObsolete.set, None, 'Allows for an automation to be marked as obsolete')
@@ -1362,7 +1417,7 @@ By default, any PN is compatible for use with other PNs in the system. In order
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'IncompatiblePairType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 326, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 326, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1387,16 +1442,16 @@ By default, any PN is compatible for use with other PNs in the system. In order
# Attribute PartA uses Python identifier PartA
__PartA = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartA'), 'PartA', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IncompatiblePairType_PartA', pyxb.binding.datatypes.string, required=True)
- __PartA._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 334, 4)
- __PartA._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 334, 4)
+ __PartA._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 334, 4)
+ __PartA._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 334, 4)
PartA = property(__PartA.value, __PartA.set, None, "An automation or kit Part Number that's incompatible with Part Number B")
# Attribute PartB uses Python identifier PartB
__PartB = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartB'), 'PartB', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IncompatiblePairType_PartB', pyxb.binding.datatypes.string, required=True)
- __PartB._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 339, 4)
- __PartB._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 339, 4)
+ __PartB._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 339, 4)
+ __PartB._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 339, 4)
PartB = property(__PartB.value, __PartB.set, None, "An automation or kit Part Number that's incompatible with Part Number A")
@@ -1411,13 +1466,13 @@ Namespace.addCategoryObject('typeBinding', 'IncompatiblePairType', IncompatibleP
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_18 (BaseEntityType):
+class CTD_ANON_19 (BaseEntityType):
"""Complex type [anonymous] with content type ELEMENT_ONLY"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 402, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 402, 6)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1425,7 +1480,7 @@ class CTD_ANON_18 (BaseEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Analogs uses Python identifier Analogs
- __Analogs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), 'Analogs', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_18_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalogs', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 406, 10), )
+ __Analogs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), 'Analogs', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_19_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalogs', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 406, 10), )
Analogs = property(__Analogs.value, __Analogs.set, None, None)
@@ -1462,7 +1517,7 @@ class StatsContinuousDistType (BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'StatsContinuousDistType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 455, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 463, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1470,91 +1525,91 @@ class StatsContinuousDistType (BaseEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleSize uses Python identifier SampleSize
- __SampleSize = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleSize'), 'SampleSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleSize', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 462, 5), )
+ __SampleSize = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleSize'), 'SampleSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleSize', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 470, 5), )
SampleSize = property(__SampleSize.value, __SampleSize.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleMean uses Python identifier SampleMean
- __SampleMean = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleMean'), 'SampleMean', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleMean', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 463, 5), )
+ __SampleMean = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleMean'), 'SampleMean', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleMean', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 471, 5), )
SampleMean = property(__SampleMean.value, __SampleMean.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleMed uses Python identifier SampleMed
- __SampleMed = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleMed'), 'SampleMed', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleMed', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 464, 5), )
+ __SampleMed = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleMed'), 'SampleMed', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleMed', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 472, 5), )
SampleMed = property(__SampleMed.value, __SampleMed.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleStd uses Python identifier SampleStd
- __SampleStd = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleStd'), 'SampleStd', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleStd', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 465, 5), )
+ __SampleStd = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleStd'), 'SampleStd', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleStd', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 473, 5), )
SampleStd = property(__SampleStd.value, __SampleStd.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Sample95thPct uses Python identifier Sample95thPct
- __Sample95thPct = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct'), 'Sample95thPct', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSample95thPct', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 466, 5), )
+ __Sample95thPct = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct'), 'Sample95thPct', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSample95thPct', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 474, 5), )
Sample95thPct = property(__Sample95thPct.value, __Sample95thPct.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}NumBins uses Python identifier NumBins
- __NumBins = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), 'NumBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdNumBins', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 467, 5), )
+ __NumBins = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), 'NumBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdNumBins', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 475, 5), )
NumBins = property(__NumBins.value, __NumBins.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinCounts uses Python identifier BinCounts
- __BinCounts = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), 'BinCounts', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCounts', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 468, 5), )
+ __BinCounts = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), 'BinCounts', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCounts', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 476, 5), )
BinCounts = property(__BinCounts.value, __BinCounts.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinWidth uses Python identifier BinWidth
- __BinWidth = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinWidth'), 'BinWidth', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinWidth', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 475, 5), )
+ __BinWidth = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinWidth'), 'BinWidth', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinWidth', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 483, 5), )
BinWidth = property(__BinWidth.value, __BinWidth.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MinOutlierValue uses Python identifier MinOutlierValue
- __MinOutlierValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue'), 'MinOutlierValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMinOutlierValue', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 476, 5), )
+ __MinOutlierValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue'), 'MinOutlierValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMinOutlierValue', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 484, 5), )
MinOutlierValue = property(__MinOutlierValue.value, __MinOutlierValue.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MinBinValue uses Python identifier MinBinValue
- __MinBinValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue'), 'MinBinValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMinBinValue', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 477, 5), )
+ __MinBinValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue'), 'MinBinValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMinBinValue', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 485, 5), )
MinBinValue = property(__MinBinValue.value, __MinBinValue.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MaxBinValue uses Python identifier MaxBinValue
- __MaxBinValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue'), 'MaxBinValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMaxBinValue', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 478, 5), )
+ __MaxBinValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue'), 'MaxBinValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMaxBinValue', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 486, 5), )
MaxBinValue = property(__MaxBinValue.value, __MaxBinValue.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MaxOutlierValue uses Python identifier MaxOutlierValue
- __MaxOutlierValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue'), 'MaxOutlierValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMaxOutlierValue', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 479, 5), )
+ __MaxOutlierValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue'), 'MaxOutlierValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMaxOutlierValue', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 487, 5), )
MaxOutlierValue = property(__MaxOutlierValue.value, __MaxOutlierValue.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MetricDescription uses Python identifier MetricDescription
- __MetricDescription = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), 'MetricDescription', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMetricDescription', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 480, 5), )
+ __MetricDescription = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), 'MetricDescription', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMetricDescription', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 488, 5), )
MetricDescription = property(__MetricDescription.value, __MetricDescription.set, None, None)
@@ -1578,8 +1633,8 @@ class StatsContinuousDistType (BaseEntityType):
# Attribute Channel uses Python identifier Channel
__Channel = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Channel'), 'Channel', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_Channel', pyxb.binding.datatypes.string)
- __Channel._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 482, 4)
- __Channel._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 482, 4)
+ __Channel._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 490, 4)
+ __Channel._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 490, 4)
Channel = property(__Channel.value, __Channel.set, None, None)
@@ -1611,7 +1666,7 @@ class StatsDiscreteDistType (BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'StatsDiscreteDistType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 486, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 494, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1619,28 +1674,28 @@ class StatsDiscreteDistType (BaseEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}NumBins uses Python identifier NumBins
- __NumBins = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), 'NumBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdNumBins', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 493, 5), )
+ __NumBins = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), 'NumBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdNumBins', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 501, 5), )
NumBins = property(__NumBins.value, __NumBins.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinCounts uses Python identifier BinCounts
- __BinCounts = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), 'BinCounts', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCounts', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 494, 5), )
+ __BinCounts = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), 'BinCounts', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCounts', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 502, 5), )
BinCounts = property(__BinCounts.value, __BinCounts.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MetricDescription uses Python identifier MetricDescription
- __MetricDescription = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), 'MetricDescription', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMetricDescription', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 501, 5), )
+ __MetricDescription = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), 'MetricDescription', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMetricDescription', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 509, 5), )
MetricDescription = property(__MetricDescription.value, __MetricDescription.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinLabels uses Python identifier BinLabels
- __BinLabels = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinLabels'), 'BinLabels', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinLabels', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 502, 5), )
+ __BinLabels = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinLabels'), 'BinLabels', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinLabels', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 510, 5), )
BinLabels = property(__BinLabels.value, __BinLabels.set, None, None)
@@ -1680,7 +1735,7 @@ class StatsTimeSeriesType (BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'StatsTimeSeriesType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 513, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 521, 1)
_ElementMap = BaseEntityType._ElementMap.copy()
_AttributeMap = BaseEntityType._AttributeMap.copy()
# Base type is BaseEntityType
@@ -1688,35 +1743,35 @@ class StatsTimeSeriesType (BaseEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}TimeUnits uses Python identifier TimeUnits
- __TimeUnits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits'), 'TimeUnits', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdTimeUnits', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 520, 5), )
+ __TimeUnits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits'), 'TimeUnits', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdTimeUnits', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 528, 5), )
TimeUnits = property(__TimeUnits.value, __TimeUnits.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ValueUnits uses Python identifier ValueUnits
- __ValueUnits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits'), 'ValueUnits', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdValueUnits', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 521, 5), )
+ __ValueUnits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits'), 'ValueUnits', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdValueUnits', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 529, 5), )
ValueUnits = property(__ValueUnits.value, __ValueUnits.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StartTime uses Python identifier StartTime
- __StartTime = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StartTime'), 'StartTime', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdStartTime', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 522, 5), )
+ __StartTime = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StartTime'), 'StartTime', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdStartTime', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 530, 5), )
StartTime = property(__StartTime.value, __StartTime.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MeasInterval uses Python identifier MeasInterval
- __MeasInterval = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval'), 'MeasInterval', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdMeasInterval', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 523, 5), )
+ __MeasInterval = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval'), 'MeasInterval', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdMeasInterval', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 531, 5), )
MeasInterval = property(__MeasInterval.value, __MeasInterval.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Values uses Python identifier Values
- __Values = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Values'), 'Values', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdValues', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 524, 5), )
+ __Values = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Values'), 'Values', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdValues', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 532, 5), )
Values = property(__Values.value, __Values.set, None, None)
@@ -1751,13 +1806,13 @@ Namespace.addCategoryObject('typeBinding', 'StatsTimeSeriesType', StatsTimeSerie
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_19 (AnalogType):
+class CTD_ANON_20 (AnalogType):
"""An unlimited number of analogs listed for the purposes of hosting in a configuration file. e.g. a list of all possible analogs on the system"""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 174, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 174, 2)
_ElementMap = AnalogType._ElementMap.copy()
_AttributeMap = AnalogType._AttributeMap.copy()
# Base type is AnalogType
@@ -1809,13 +1864,13 @@ class CTD_ANON_19 (AnalogType):
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_20 (AnalogType):
+class CTD_ANON_21 (AnalogType):
"""A set of four analogs, one for each of the nucleotides, grouped together for the purposes of a single experiment."""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 250, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 250, 2)
_ElementMap = AnalogType._ElementMap.copy()
_AttributeMap = AnalogType._AttributeMap.copy()
# Base type is AnalogType
@@ -1873,7 +1928,7 @@ class InputOutputDataType (StrictEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'InputOutputDataType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 266, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 266, 1)
_ElementMap = StrictEntityType._ElementMap.copy()
_AttributeMap = StrictEntityType._AttributeMap.copy()
# Base type is StrictEntityType
@@ -1919,7 +1974,7 @@ If the part number has an NFC associated with it, the contents of the NFC may be
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'PartNumberType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 347, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 347, 1)
_ElementMap = DataEntityType._ElementMap.copy()
_AttributeMap = DataEntityType._AttributeMap.copy()
# Base type is DataEntityType
@@ -1956,48 +2011,48 @@ If the part number has an NFC associated with it, the contents of the NFC may be
# Attribute PartNumber uses Python identifier PartNumber
__PartNumber = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartNumber'), 'PartNumber', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_PartNumber', pyxb.binding.datatypes.string)
- __PartNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 355, 4)
- __PartNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 355, 4)
+ __PartNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 355, 4)
+ __PartNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 355, 4)
PartNumber = property(__PartNumber.value, __PartNumber.set, None, 'The kit part number')
# Attribute LotNumber uses Python identifier LotNumber
__LotNumber = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'LotNumber'), 'LotNumber', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_LotNumber', pyxb.binding.datatypes.string)
- __LotNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 360, 4)
- __LotNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 360, 4)
+ __LotNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 360, 4)
+ __LotNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 360, 4)
LotNumber = property(__LotNumber.value, __LotNumber.set, None, 'The kit lot number')
# Attribute Barcode uses Python identifier Barcode
- __Barcode = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Barcode'), 'Barcode', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_Barcode', pyxb.binding.datatypes.ID)
- __Barcode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 365, 4)
- __Barcode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 365, 4)
+ __Barcode = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Barcode'), 'Barcode', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_Barcode', pyxb.binding.datatypes.string)
+ __Barcode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 365, 4)
+ __Barcode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 365, 4)
Barcode = property(__Barcode.value, __Barcode.set, None, 'The kit barcode; used for tracking purposes.')
# Attribute ExpirationDate uses Python identifier ExpirationDate
__ExpirationDate = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ExpirationDate'), 'ExpirationDate', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_ExpirationDate', pyxb.binding.datatypes.date)
- __ExpirationDate._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 370, 4)
- __ExpirationDate._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 370, 4)
+ __ExpirationDate._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 370, 4)
+ __ExpirationDate._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 370, 4)
ExpirationDate = property(__ExpirationDate.value, __ExpirationDate.set, None, "The kit's shelf life")
# Attribute IsObsolete uses Python identifier IsObsolete
__IsObsolete = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsObsolete'), 'IsObsolete', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_IsObsolete', pyxb.binding.datatypes.boolean, unicode_default='false')
- __IsObsolete._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 375, 4)
- __IsObsolete._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 375, 4)
+ __IsObsolete._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 375, 4)
+ __IsObsolete._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 375, 4)
IsObsolete = property(__IsObsolete.value, __IsObsolete.set, None, None)
# Attribute IsRestricted uses Python identifier IsRestricted
__IsRestricted = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsRestricted'), 'IsRestricted', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_IsRestricted', pyxb.binding.datatypes.boolean, unicode_default='false')
- __IsRestricted._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 376, 4)
- __IsRestricted._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 376, 4)
+ __IsRestricted._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 376, 4)
+ __IsRestricted._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 376, 4)
IsRestricted = property(__IsRestricted.value, __IsRestricted.set, None, None)
@@ -2022,7 +2077,7 @@ class RecordedEventType (DataEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'RecordedEventType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 380, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 380, 1)
_ElementMap = DataEntityType._ElementMap.copy()
_AttributeMap = DataEntityType._AttributeMap.copy()
# Base type is DataEntityType
@@ -2059,8 +2114,8 @@ class RecordedEventType (DataEntityType):
# Attribute Context uses Python identifier Context
__Context = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Context'), 'Context', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_RecordedEventType_Context', pyxb.binding.datatypes.string)
- __Context._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 386, 4)
- __Context._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 386, 4)
+ __Context._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 386, 4)
+ __Context._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 386, 4)
Context = property(__Context.value, __Context.set, None, 'The part of the system in effect when the event was recorded')
@@ -2080,7 +2135,7 @@ class SequencingChemistry (DataEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 394, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 394, 1)
_ElementMap = DataEntityType._ElementMap.copy()
_AttributeMap = DataEntityType._AttributeMap.copy()
# Base type is DataEntityType
@@ -2092,7 +2147,7 @@ class SequencingChemistry (DataEntityType):
# Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DyeSet uses Python identifier DyeSet
- __DyeSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DyeSet'), 'DyeSet', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistry_httppacificbiosciences_comPacBioBaseDataModel_xsdDyeSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 401, 5), )
+ __DyeSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DyeSet'), 'DyeSet', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistry_httppacificbiosciences_comPacBioBaseDataModel_xsdDyeSet', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 401, 5), )
DyeSet = property(__DyeSet.value, __DyeSet.set, None, None)
@@ -2137,7 +2192,7 @@ class SequencingChemistryConfig (DataEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistryConfig')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 432, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 432, 1)
_ElementMap = DataEntityType._ElementMap.copy()
_AttributeMap = DataEntityType._AttributeMap.copy()
# Base type is DataEntityType
@@ -2149,19 +2204,26 @@ class SequencingChemistryConfig (DataEntityType):
# Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Analogs uses Python identifier Analogs
- __Analogs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), 'Analogs', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalogs', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 439, 5), )
+ __Analogs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), 'Analogs', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalogs', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 439, 5), )
Analogs = property(__Analogs.value, __Analogs.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DefaultLaserSetPoint uses Python identifier DefaultLaserSetPoint
- __DefaultLaserSetPoint = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint'), 'DefaultLaserSetPoint', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdDefaultLaserSetPoint', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 446, 5), )
+ __DefaultLaserSetPoint = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint'), 'DefaultLaserSetPoint', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdDefaultLaserSetPoint', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 446, 5), )
DefaultLaserSetPoint = property(__DefaultLaserSetPoint.value, __DefaultLaserSetPoint.set, None, "The laser power at the input couple, needed to achieve predefined performance requirements based on a median 'golden' SMRT Cell.")
+ # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}TargetSNR uses Python identifier TargetSNR
+ __TargetSNR = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TargetSNR'), 'TargetSNR', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdTargetSNR', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 451, 5), )
+
+
+ TargetSNR = property(__TargetSNR.value, __TargetSNR.set, None, None)
+
+
# Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
@@ -2187,7 +2249,8 @@ class SequencingChemistryConfig (DataEntityType):
# Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
_ElementMap.update({
__Analogs.name() : __Analogs,
- __DefaultLaserSetPoint.name() : __DefaultLaserSetPoint
+ __DefaultLaserSetPoint.name() : __DefaultLaserSetPoint,
+ __TargetSNR.name() : __TargetSNR
})
_AttributeMap.update({
@@ -2202,7 +2265,7 @@ class IndexedDataType (InputOutputDataType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'IndexedDataType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 271, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 271, 1)
_ElementMap = InputOutputDataType._ElementMap.copy()
_AttributeMap = InputOutputDataType._AttributeMap.copy()
# Base type is InputOutputDataType
@@ -2210,14 +2273,14 @@ class IndexedDataType (InputOutputDataType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources uses Python identifier ExternalResources
- __ExternalResources = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), 'ExternalResources', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IndexedDataType_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResources', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 256, 1), )
+ __ExternalResources = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), 'ExternalResources', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IndexedDataType_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResources', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 256, 1), )
ExternalResources = property(__ExternalResources.value, __ExternalResources.set, None, 'Pointers to data that do not reside inside the parent structure')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}FileIndices uses Python identifier FileIndices
- __FileIndices = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FileIndices'), 'FileIndices', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IndexedDataType_httppacificbiosciences_comPacBioBaseDataModel_xsdFileIndices', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 275, 5), )
+ __FileIndices = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FileIndices'), 'FileIndices', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IndexedDataType_httppacificbiosciences_comPacBioBaseDataModel_xsdFileIndices', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 275, 5), )
FileIndices = property(__FileIndices.value, __FileIndices.set, None, None)
@@ -2261,7 +2324,7 @@ class SupplyKitBinding (PartNumberType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitBinding')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 535, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 543, 1)
_ElementMap = PartNumberType._ElementMap.copy()
_AttributeMap = PartNumberType._AttributeMap.copy()
# Base type is PartNumberType
@@ -2273,14 +2336,14 @@ class SupplyKitBinding (PartNumberType):
# Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Control uses Python identifier Control
- __Control = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Control'), 'Control', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitBinding_httppacificbiosciences_comPacBioBaseDataModel_xsdControl', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 542, 5), )
+ __Control = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Control'), 'Control', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitBinding_httppacificbiosciences_comPacBioBaseDataModel_xsdControl', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 550, 5), )
Control = property(__Control.value, __Control.set, None, 'Defines the binding kit internal control name. Present when used, otherwise not used if not defined. ')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IsControlUsed uses Python identifier IsControlUsed
- __IsControlUsed = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed'), 'IsControlUsed', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitBinding_httppacificbiosciences_comPacBioBaseDataModel_xsdIsControlUsed', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 547, 5), )
+ __IsControlUsed = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed'), 'IsControlUsed', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitBinding_httppacificbiosciences_comPacBioBaseDataModel_xsdIsControlUsed', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 555, 5), )
IsControlUsed = property(__IsControlUsed.value, __IsControlUsed.set, None, 'True if the control was used during run, otherwise false. ')
@@ -2338,7 +2401,7 @@ class SupplyKitCellPack (PartNumberType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitCellPack')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 556, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 564, 1)
_ElementMap = PartNumberType._ElementMap.copy()
_AttributeMap = PartNumberType._AttributeMap.copy()
# Base type is PartNumberType
@@ -2350,7 +2413,7 @@ class SupplyKitCellPack (PartNumberType):
# Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ChipLayout uses Python identifier ChipLayout
- __ChipLayout = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), 'ChipLayout', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitCellPack_httppacificbiosciences_comPacBioBaseDataModel_xsdChipLayout', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 563, 5), )
+ __ChipLayout = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), 'ChipLayout', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitCellPack_httppacificbiosciences_comPacBioBaseDataModel_xsdChipLayout', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 571, 5), )
ChipLayout = property(__ChipLayout.value, __ChipLayout.set, None, 'Defines the internal chip layout name, if any. ')
@@ -2394,8 +2457,8 @@ class SupplyKitCellPack (PartNumberType):
# Attribute SupportsCellReuse uses Python identifier SupportsCellReuse
__SupportsCellReuse = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SupportsCellReuse'), 'SupportsCellReuse', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitCellPack_SupportsCellReuse', pyxb.binding.datatypes.anySimpleType)
- __SupportsCellReuse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 569, 4)
- __SupportsCellReuse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 569, 4)
+ __SupportsCellReuse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 577, 4)
+ __SupportsCellReuse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 577, 4)
SupportsCellReuse = property(__SupportsCellReuse.value, __SupportsCellReuse.set, None, 'If SupportsCellReuse is true, it can be used for regular sequencing as well as in a reuse scenario.')
@@ -2415,7 +2478,7 @@ class SupplyKitControl (PartNumberType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitControl')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 577, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 585, 1)
_ElementMap = PartNumberType._ElementMap.copy()
_AttributeMap = PartNumberType._AttributeMap.copy()
# Base type is PartNumberType
@@ -2427,7 +2490,7 @@ class SupplyKitControl (PartNumberType):
# Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}InternalControlName uses Python identifier InternalControlName
- __InternalControlName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName'), 'InternalControlName', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitControl_httppacificbiosciences_comPacBioBaseDataModel_xsdInternalControlName', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 584, 5), )
+ __InternalControlName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName'), 'InternalControlName', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitControl_httppacificbiosciences_comPacBioBaseDataModel_xsdInternalControlName', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 592, 5), )
InternalControlName = property(__InternalControlName.value, __InternalControlName.set, None, 'Defines the internal control name, if any. ')
@@ -2484,7 +2547,7 @@ class SupplyKitTemplate (PartNumberType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitTemplate')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 593, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 601, 1)
_ElementMap = PartNumberType._ElementMap.copy()
_AttributeMap = PartNumberType._AttributeMap.copy()
# Base type is PartNumberType
@@ -2496,28 +2559,28 @@ class SupplyKitTemplate (PartNumberType):
# Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}LeftAdaptorSequence uses Python identifier LeftAdaptorSequence
- __LeftAdaptorSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence'), 'LeftAdaptorSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdLeftAdaptorSequence', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 600, 5), )
+ __LeftAdaptorSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence'), 'LeftAdaptorSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdLeftAdaptorSequence', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 608, 5), )
LeftAdaptorSequence = property(__LeftAdaptorSequence.value, __LeftAdaptorSequence.set, None, 'Left adapter DNA sequence.')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}LeftPrimerSequence uses Python identifier LeftPrimerSequence
- __LeftPrimerSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence'), 'LeftPrimerSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdLeftPrimerSequence', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 605, 5), )
+ __LeftPrimerSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence'), 'LeftPrimerSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdLeftPrimerSequence', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 613, 5), )
LeftPrimerSequence = property(__LeftPrimerSequence.value, __LeftPrimerSequence.set, None, None)
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RightAdaptorSequence uses Python identifier RightAdaptorSequence
- __RightAdaptorSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence'), 'RightAdaptorSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdRightAdaptorSequence', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 606, 5), )
+ __RightAdaptorSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence'), 'RightAdaptorSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdRightAdaptorSequence', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 614, 5), )
RightAdaptorSequence = property(__RightAdaptorSequence.value, __RightAdaptorSequence.set, None, 'Right adapter DNA sequence. If not specified, a symmetric adapter model is inferred, where the left adapter sequence is used wherever needed.')
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RightPrimerSequence uses Python identifier RightPrimerSequence
- __RightPrimerSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence'), 'RightPrimerSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdRightPrimerSequence', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 611, 5), )
+ __RightPrimerSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence'), 'RightPrimerSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdRightPrimerSequence', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 619, 5), )
RightPrimerSequence = property(__RightPrimerSequence.value, __RightPrimerSequence.set, None, 'Right primaer sequence. If not specified, a symmetric model is inferred, where the left primer sequence is used wherever needed.')
@@ -2561,16 +2624,16 @@ class SupplyKitTemplate (PartNumberType):
# Attribute MinInsertSize uses Python identifier MinInsertSize
__MinInsertSize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MinInsertSize'), 'MinInsertSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_MinInsertSize', pyxb.binding.datatypes.int)
- __MinInsertSize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 617, 4)
- __MinInsertSize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 617, 4)
+ __MinInsertSize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 625, 4)
+ __MinInsertSize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 625, 4)
MinInsertSize = property(__MinInsertSize.value, __MinInsertSize.set, None, 'Minimum recommended insert size')
# Attribute MaxInsertSize uses Python identifier MaxInsertSize
__MaxInsertSize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxInsertSize'), 'MaxInsertSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_MaxInsertSize', pyxb.binding.datatypes.int)
- __MaxInsertSize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 622, 4)
- __MaxInsertSize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 622, 4)
+ __MaxInsertSize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 630, 4)
+ __MaxInsertSize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 630, 4)
MaxInsertSize = property(__MaxInsertSize.value, __MaxInsertSize.set, None, 'Maximum recommended insert size')
@@ -2588,13 +2651,13 @@ Namespace.addCategoryObject('typeBinding', 'SupplyKitTemplate', SupplyKitTemplat
# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_21 (IndexedDataType):
+class CTD_ANON_22 (IndexedDataType):
"""for example, an output file could be the BAM file, which could be associated with multiple indices into it."""
_TypeDefinition = None
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 754, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 762, 2)
_ElementMap = IndexedDataType._ElementMap.copy()
_AttributeMap = IndexedDataType._AttributeMap.copy()
# Base type is IndexedDataType
@@ -2635,45 +2698,45 @@ class CTD_ANON_21 (IndexedDataType):
-ExtensionElement = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), pyxb.binding.datatypes.anyType, documentation='A generic element whose contents are undefined at the schema level. This is used to extend the data model.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 728, 1))
+ExtensionElement = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), pyxb.binding.datatypes.anyType, documentation='A generic element whose contents are undefined at the schema level. This is used to extend the data model.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 736, 1))
Namespace.addCategoryObject('elementBinding', ExtensionElement.name().localName(), ExtensionElement)
-DataPointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataPointers'), CTD_ANON_3, documentation='Pointer list to UniqueIds in the system', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 222, 1))
+DataPointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataPointers'), CTD_ANON_3, documentation='Pointer list to UniqueIds in the system', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 222, 1))
Namespace.addCategoryObject('elementBinding', DataPointers.name().localName(), DataPointers)
-ExternalResources = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), CTD_ANON_4, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 256, 1))
+ExternalResources = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), CTD_ANON_4, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 256, 1))
Namespace.addCategoryObject('elementBinding', ExternalResources.name().localName(), ExternalResources)
-PacBioSequencingChemistry = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioSequencingChemistry'), CTD_ANON_8, documentation='Root element for document containing the container of analog set, SequencingChemistryConfig', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 422, 1))
+PacBioSequencingChemistry = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioSequencingChemistry'), CTD_ANON_8, documentation='Root element for document containing the container of analog set, SequencingChemistryConfig', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 422, 1))
Namespace.addCategoryObject('elementBinding', PacBioSequencingChemistry.name().localName(), PacBioSequencingChemistry)
-ValueDataType = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ValueDataType'), SupportedDataTypes, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 726, 1))
+ValueDataType = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ValueDataType'), SupportedDataTypes, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 734, 1))
Namespace.addCategoryObject('elementBinding', ValueDataType.name().localName(), ValueDataType)
-KeyValueMap = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), CTD_ANON_16, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 760, 1))
+KeyValueMap = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), CTD_ANON_17, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 768, 1))
Namespace.addCategoryObject('elementBinding', KeyValueMap.name().localName(), KeyValueMap)
-DataEntity = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataEntity'), DataEntityType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 180, 1))
+DataEntity = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataEntity'), DataEntityType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 180, 1))
Namespace.addCategoryObject('elementBinding', DataEntity.name().localName(), DataEntity)
-AutomationParameter = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), DataEntityType, documentation='One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 321, 1))
+AutomationParameter = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), DataEntityType, documentation='One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 321, 1))
Namespace.addCategoryObject('elementBinding', AutomationParameter.name().localName(), AutomationParameter)
-ConfigSetAnalog = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConfigSetAnalog'), CTD_ANON_19, documentation='An unlimited number of analogs listed for the purposes of hosting in a configuration file. e.g. a list of all possible analogs on the system', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 170, 1))
+ConfigSetAnalog = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConfigSetAnalog'), CTD_ANON_20, documentation='An unlimited number of analogs listed for the purposes of hosting in a configuration file. e.g. a list of all possible analogs on the system', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 170, 1))
Namespace.addCategoryObject('elementBinding', ConfigSetAnalog.name().localName(), ConfigSetAnalog)
-DyeSetAnalog = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DyeSetAnalog'), CTD_ANON_20, documentation='A set of four analogs, one for each of the nucleotides, grouped together for the purposes of a single experiment.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 246, 1))
+DyeSetAnalog = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DyeSetAnalog'), CTD_ANON_21, documentation='A set of four analogs, one for each of the nucleotides, grouped together for the purposes of a single experiment.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 246, 1))
Namespace.addCategoryObject('elementBinding', DyeSetAnalog.name().localName(), DyeSetAnalog)
-ChemistryConfig = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), SequencingChemistryConfig, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 789, 1))
+ChemistryConfig = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), SequencingChemistryConfig, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 797, 1))
Namespace.addCategoryObject('elementBinding', ChemistryConfig.name().localName(), ChemistryConfig)
-ExternalResource = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), CTD_ANON_21, documentation='for example, an output file could be the BAM file, which could be associated with multiple indices into it.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 750, 1))
+ExternalResource = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), CTD_ANON_22, documentation='for example, an output file could be the BAM file, which could be associated with multiple indices into it.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 758, 1))
Namespace.addCategoryObject('elementBinding', ExternalResource.name().localName(), ExternalResource)
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Values'), CTD_ANON_, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 16, 8)))
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Values'), CTD_ANON_, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 16, 8)))
def _BuildAutomaton ():
# Remove this helper function from the namespace after it is invoked
@@ -2684,7 +2747,7 @@ def _BuildAutomaton ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Values')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 16, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Values')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 16, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2695,7 +2758,7 @@ CTD_ANON._Automaton = _BuildAutomaton()
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Value'), pyxb.binding.datatypes.float, scope=CTD_ANON_, documentation='There should be as many values as specified in the Number of Filter Bins attribute.\nEach value is a probability, in the range of [0, 1].', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 19, 11)))
+CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Value'), pyxb.binding.datatypes.float, scope=CTD_ANON_, documentation='There should be as many values as specified in the Number of Filter Bins attribute.\nEach value is a probability, in the range of [0, 1].', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 19, 11)))
def _BuildAutomaton_ ():
# Remove this helper function from the namespace after it is invoked
@@ -2706,7 +2769,7 @@ def _BuildAutomaton_ ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Value')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 19, 11))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Value')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 19, 11))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2719,7 +2782,7 @@ CTD_ANON_._Automaton = _BuildAutomaton_()
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), pyxb.binding.datatypes.anyType, scope=CTD_ANON_2, documentation='A generic element whose contents are undefined at the schema level. This is used to extend the data model.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 728, 1)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), pyxb.binding.datatypes.anyType, scope=CTD_ANON_2, documentation='A generic element whose contents are undefined at the schema level. This is used to extend the data model.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 736, 1)))
def _BuildAutomaton_2 ():
# Remove this helper function from the namespace after it is invoked
@@ -2728,12 +2791,12 @@ def _BuildAutomaton_2 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 89, 6))
+ cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 89, 6))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 89, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 89, 6))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2746,7 +2809,7 @@ CTD_ANON_2._Automaton = _BuildAutomaton_2()
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataPointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 228, 4)))
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataPointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 228, 4)))
def _BuildAutomaton_3 ():
# Remove this helper function from the namespace after it is invoked
@@ -2755,12 +2818,12 @@ def _BuildAutomaton_3 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 228, 4))
+ cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 228, 4))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataPointer')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 228, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataPointer')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 228, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2773,7 +2836,7 @@ CTD_ANON_3._Automaton = _BuildAutomaton_3()
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), CTD_ANON_21, scope=CTD_ANON_4, documentation='for example, an output file could be the BAM file, which could be associated with multiple indices into it.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 750, 1)))
+CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), CTD_ANON_22, scope=CTD_ANON_4, documentation='for example, an output file could be the BAM file, which could be associated with multiple indices into it.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 758, 1)))
def _BuildAutomaton_4 ():
# Remove this helper function from the namespace after it is invoked
@@ -2784,7 +2847,7 @@ def _BuildAutomaton_4 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 262, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 262, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2797,7 +2860,7 @@ CTD_ANON_4._Automaton = _BuildAutomaton_4()
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FileIndex'), InputOutputDataType, scope=CTD_ANON_5, documentation='e.g. index for output files, allowing one to find information in the output file', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 278, 8)))
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FileIndex'), InputOutputDataType, scope=CTD_ANON_5, documentation='e.g. index for output files, allowing one to find information in the output file', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 278, 8)))
def _BuildAutomaton_5 ():
# Remove this helper function from the namespace after it is invoked
@@ -2808,7 +2871,7 @@ def _BuildAutomaton_5 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndex')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 278, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndex')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 278, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2821,7 +2884,7 @@ CTD_ANON_5._Automaton = _BuildAutomaton_5()
-CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), DataEntityType, scope=CTD_ANON_6, documentation='One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 321, 1)))
+CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), DataEntityType, scope=CTD_ANON_6, documentation='One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 321, 1)))
def _BuildAutomaton_6 ():
# Remove this helper function from the namespace after it is invoked
@@ -2832,7 +2895,7 @@ def _BuildAutomaton_6 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 298, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 298, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2845,7 +2908,7 @@ CTD_ANON_6._Automaton = _BuildAutomaton_6()
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analog'), AnalogType, scope=CTD_ANON_7, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 409, 13)))
+CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analog'), AnalogType, scope=CTD_ANON_7, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 409, 13)))
def _BuildAutomaton_7 ():
# Remove this helper function from the namespace after it is invoked
@@ -2854,12 +2917,12 @@ def _BuildAutomaton_7 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=1, max=4, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 409, 13))
+ cc_0 = fac.CounterCondition(min=1, max=4, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 409, 13))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analog')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 409, 13))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analog')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 409, 13))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2872,7 +2935,7 @@ CTD_ANON_7._Automaton = _BuildAutomaton_7()
-CTD_ANON_8._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), SequencingChemistryConfig, scope=CTD_ANON_8, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 789, 1)))
+CTD_ANON_8._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), SequencingChemistryConfig, scope=CTD_ANON_8, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 797, 1)))
def _BuildAutomaton_8 ():
# Remove this helper function from the namespace after it is invoked
@@ -2883,7 +2946,7 @@ def _BuildAutomaton_8 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 428, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 428, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2894,7 +2957,7 @@ CTD_ANON_8._Automaton = _BuildAutomaton_8()
-CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analog'), AnalogType, scope=CTD_ANON_9, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 442, 8)))
+CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analog'), AnalogType, scope=CTD_ANON_9, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 442, 8)))
def _BuildAutomaton_9 ():
# Remove this helper function from the namespace after it is invoked
@@ -2903,12 +2966,12 @@ def _BuildAutomaton_9 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=1, max=4, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 442, 8))
+ cc_0 = fac.CounterCondition(min=1, max=4, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 442, 8))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analog')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 442, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analog')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 442, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2921,7 +2984,7 @@ CTD_ANON_9._Automaton = _BuildAutomaton_9()
-CTD_ANON_10._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_10, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 471, 8)))
+CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_11, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 479, 8)))
def _BuildAutomaton_10 ():
# Remove this helper function from the namespace after it is invoked
@@ -2932,7 +2995,7 @@ def _BuildAutomaton_10 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCount')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 471, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCount')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 479, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2940,12 +3003,12 @@ def _BuildAutomaton_10 ():
]))
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_10._Automaton = _BuildAutomaton_10()
+CTD_ANON_11._Automaton = _BuildAutomaton_10()
-CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_11, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 497, 8)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_12, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 505, 8)))
def _BuildAutomaton_11 ():
# Remove this helper function from the namespace after it is invoked
@@ -2956,7 +3019,7 @@ def _BuildAutomaton_11 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCount')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 497, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCount')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 505, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2964,12 +3027,12 @@ def _BuildAutomaton_11 ():
]))
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_11._Automaton = _BuildAutomaton_11()
+CTD_ANON_12._Automaton = _BuildAutomaton_11()
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinLabel'), pyxb.binding.datatypes.string, scope=CTD_ANON_12, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 505, 8)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinLabel'), pyxb.binding.datatypes.string, scope=CTD_ANON_13, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 513, 8)))
def _BuildAutomaton_12 ():
# Remove this helper function from the namespace after it is invoked
@@ -2980,7 +3043,7 @@ def _BuildAutomaton_12 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinLabel')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 505, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinLabel')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 513, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -2988,12 +3051,12 @@ def _BuildAutomaton_12 ():
]))
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_12._Automaton = _BuildAutomaton_12()
+CTD_ANON_13._Automaton = _BuildAutomaton_12()
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Val'), pyxb.binding.datatypes.float, scope=CTD_ANON_13, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 527, 8)))
+CTD_ANON_14._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Val'), pyxb.binding.datatypes.float, scope=CTD_ANON_14, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 535, 8)))
def _BuildAutomaton_13 ():
# Remove this helper function from the namespace after it is invoked
@@ -3002,12 +3065,12 @@ def _BuildAutomaton_13 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 527, 8))
+ cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 535, 8))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Val')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 527, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Val')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 535, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3015,12 +3078,12 @@ def _BuildAutomaton_13 ():
fac.UpdateInstruction(cc_0, True) ]))
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_13._Automaton = _BuildAutomaton_13()
+CTD_ANON_14._Automaton = _BuildAutomaton_13()
-UserDefinedFieldsType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataEntities'), DataEntityType, scope=UserDefinedFieldsType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 723, 3)))
+UserDefinedFieldsType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataEntities'), DataEntityType, scope=UserDefinedFieldsType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 731, 3)))
def _BuildAutomaton_14 ():
# Remove this helper function from the namespace after it is invoked
@@ -3031,7 +3094,7 @@ def _BuildAutomaton_14 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(UserDefinedFieldsType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataEntities')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 723, 3))
+ symbol = pyxb.binding.content.ElementUse(UserDefinedFieldsType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataEntities')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 731, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3044,7 +3107,7 @@ UserDefinedFieldsType._Automaton = _BuildAutomaton_14()
-FilterType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Properties'), CTD_ANON_14, scope=FilterType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 735, 3)))
+FilterType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Properties'), CTD_ANON_15, scope=FilterType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 743, 3)))
def _BuildAutomaton_15 ():
# Remove this helper function from the namespace after it is invoked
@@ -3055,7 +3118,7 @@ def _BuildAutomaton_15 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(FilterType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Properties')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 735, 3))
+ symbol = pyxb.binding.content.ElementUse(FilterType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Properties')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 743, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3066,7 +3129,7 @@ FilterType._Automaton = _BuildAutomaton_15()
-CTD_ANON_14._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Property'), CTD_ANON_15, scope=CTD_ANON_14, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 738, 6)))
+CTD_ANON_15._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Property'), CTD_ANON_16, scope=CTD_ANON_15, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 746, 6)))
def _BuildAutomaton_16 ():
# Remove this helper function from the namespace after it is invoked
@@ -3077,7 +3140,7 @@ def _BuildAutomaton_16 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Property')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 738, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Property')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 746, 6))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3085,12 +3148,12 @@ def _BuildAutomaton_16 ():
]))
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_14._Automaton = _BuildAutomaton_16()
+CTD_ANON_15._Automaton = _BuildAutomaton_16()
-CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Items'), CTD_ANON_17, scope=CTD_ANON_16, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 763, 4)))
+CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Items'), CTD_ANON_18, scope=CTD_ANON_17, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 771, 4)))
def _BuildAutomaton_17 ():
# Remove this helper function from the namespace after it is invoked
@@ -3101,18 +3164,18 @@ def _BuildAutomaton_17 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Items')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 763, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Items')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 771, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_16._Automaton = _BuildAutomaton_17()
+CTD_ANON_17._Automaton = _BuildAutomaton_17()
-CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Item'), MapItemType, scope=CTD_ANON_17, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 766, 7)))
+CTD_ANON_18._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Item'), MapItemType, scope=CTD_ANON_18, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 774, 7)))
def _BuildAutomaton_18 ():
# Remove this helper function from the namespace after it is invoked
@@ -3121,12 +3184,12 @@ def _BuildAutomaton_18 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 766, 7))
+ cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 774, 7))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Item')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 766, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Item')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 774, 7))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3134,12 +3197,12 @@ def _BuildAutomaton_18 ():
fac.UpdateInstruction(cc_0, True) ]))
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_17._Automaton = _BuildAutomaton_18()
+CTD_ANON_18._Automaton = _BuildAutomaton_18()
-MapType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), CTD_ANON_16, scope=MapType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 760, 1)))
+MapType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), CTD_ANON_17, scope=MapType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 768, 1)))
def _BuildAutomaton_19 ():
# Remove this helper function from the namespace after it is invoked
@@ -3150,7 +3213,7 @@ def _BuildAutomaton_19 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(MapType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 779, 3))
+ symbol = pyxb.binding.content.ElementUse(MapType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 787, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3161,11 +3224,11 @@ MapType._Automaton = _BuildAutomaton_19()
-MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Key'), pyxb.binding.datatypes.ID, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 784, 3)))
+MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Key'), pyxb.binding.datatypes.ID, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 792, 3)))
-MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Value'), pyxb.binding.datatypes.anyType, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 785, 3)))
+MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Value'), pyxb.binding.datatypes.anyType, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 793, 3)))
-MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Description'), pyxb.binding.datatypes.string, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 786, 3)))
+MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Description'), pyxb.binding.datatypes.string, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 794, 3)))
def _BuildAutomaton_20 ():
# Remove this helper function from the namespace after it is invoked
@@ -3176,15 +3239,15 @@ def _BuildAutomaton_20 ():
counters = set()
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Key')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 784, 3))
+ symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Key')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 792, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Value')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 785, 3))
+ symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Value')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 793, 3))
st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Description')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 786, 3))
+ symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Description')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 794, 3))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
@@ -3203,7 +3266,7 @@ MapItemType._Automaton = _BuildAutomaton_20()
-BaseEntityType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Extensions'), CTD_ANON_2, scope=BaseEntityType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3)))
+BaseEntityType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Extensions'), CTD_ANON_2, scope=BaseEntityType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3)))
def _BuildAutomaton_21 ():
# Remove this helper function from the namespace after it is invoked
@@ -3212,12 +3275,12 @@ def _BuildAutomaton_21 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(BaseEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(BaseEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3230,15 +3293,15 @@ BaseEntityType._Automaton = _BuildAutomaton_21()
-AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Spectrum'), CTD_ANON, scope=AnalogType, documentation='A vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 10, 5)))
+AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Spectrum'), CTD_ANON, scope=AnalogType, documentation='A vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 10, 5)))
-AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='Relative intensity of emission vs. a reference analog using standardized metrology \u2013 e.g., relative to the amplitude of the \u201c542\u201d analog as measured by the mean DWS pkMid on the Astro instrument.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 36, 5)))
+AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='Relative intensity of emission vs. a reference analog using standardized metrology \u2013 e.g., relative to the amplitude of the \u201c542\u201d analog as measured by the mean DWS pkMid on the Astro instrument.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 36, 5)))
-AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='The 1-sigma fractional variation of the intra-pulse signal, independent of any Shot noise associated with that signal', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 41, 5)))
+AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='The 1-sigma fractional variation of the intra-pulse signal, independent of any Shot noise associated with that signal', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 41, 5)))
-AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='The 1-sigma fractional variation, pulse-to-pulse, of the mean signal level (i.e., the pkMid).', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 46, 5)))
+AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='The 1-sigma fractional variation, pulse-to-pulse, of the mean signal level (i.e., the pkMid).', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 46, 5)))
-AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 51, 5)))
+AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 51, 5)))
def _BuildAutomaton_22 ():
# Remove this helper function from the namespace after it is invoked
@@ -3247,31 +3310,31 @@ def _BuildAutomaton_22 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 10, 5))
+ symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 10, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 36, 5))
+ symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 36, 5))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 41, 5))
+ symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 41, 5))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = None
- symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 46, 5))
+ symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 46, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 51, 5))
+ symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 51, 5))
st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
transitions = []
@@ -3311,12 +3374,12 @@ def _BuildAutomaton_23 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(StrictEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(StrictEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3329,9 +3392,9 @@ StrictEntityType._Automaton = _BuildAutomaton_23()
-DataEntityType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue'), pyxb.binding.datatypes.base64Binary, scope=DataEntityType, documentation='A complex data type element, such as an image, file, binary object, etc.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5)))
+DataEntityType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue'), pyxb.binding.datatypes.base64Binary, scope=DataEntityType, documentation='A complex data type element, such as an image, file, binary object, etc.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5)))
-DataEntityType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CheckSum'), pyxb.binding.datatypes.string, scope=DataEntityType, documentation='small-size datum of the attached value for the purpose of detecting errors or modification which may have been introduced during its transmission or storage', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5)))
+DataEntityType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CheckSum'), pyxb.binding.datatypes.string, scope=DataEntityType, documentation='small-size datum of the attached value for the purpose of detecting errors or modification which may have been introduced during its transmission or storage', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5)))
def _BuildAutomaton_24 ():
# Remove this helper function from the namespace after it is invoked
@@ -3340,26 +3403,26 @@ def _BuildAutomaton_24 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(DataEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(DataEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(DataEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(DataEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(DataEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(DataEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
@@ -3393,12 +3456,12 @@ def _BuildAutomaton_25 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(DNABarcode._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(DNABarcode._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3411,7 +3474,7 @@ DNABarcode._Automaton = _BuildAutomaton_25()
-AutomationType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), CTD_ANON_6, scope=AutomationType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 295, 5)))
+AutomationType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), CTD_ANON_6, scope=AutomationType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 295, 5)))
def _BuildAutomaton_26 ():
# Remove this helper function from the namespace after it is invoked
@@ -3420,19 +3483,19 @@ def _BuildAutomaton_26 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 295, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 295, 5))
counters.add(cc_1)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(AutomationType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(AutomationType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(AutomationType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 295, 5))
+ symbol = pyxb.binding.content.ElementUse(AutomationType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 295, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
@@ -3458,12 +3521,12 @@ def _BuildAutomaton_27 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(IncompatiblePairType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(IncompatiblePairType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3476,7 +3539,7 @@ IncompatiblePairType._Automaton = _BuildAutomaton_27()
-CTD_ANON_18._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), CTD_ANON_7, scope=CTD_ANON_18, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 406, 10)))
+CTD_ANON_19._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), CTD_ANON_7, scope=CTD_ANON_19, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 406, 10)))
def _BuildAutomaton_28 ():
# Remove this helper function from the namespace after it is invoked
@@ -3485,15 +3548,15 @@ def _BuildAutomaton_28 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analogs')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 406, 10))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analogs')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 406, 10))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
@@ -3505,36 +3568,36 @@ def _BuildAutomaton_28 ():
transitions = []
st_1._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_18._Automaton = _BuildAutomaton_28()
+CTD_ANON_19._Automaton = _BuildAutomaton_28()
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleSize'), pyxb.binding.datatypes.int, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 462, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleSize'), pyxb.binding.datatypes.int, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 470, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleMean'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 463, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleMean'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 471, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleMed'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 464, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleMed'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 472, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleStd'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 465, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleStd'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 473, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 466, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 474, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), pyxb.binding.datatypes.int, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 467, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), pyxb.binding.datatypes.int, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 475, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), CTD_ANON_10, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 468, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), CTD_ANON_11, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 476, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinWidth'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 475, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinWidth'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 483, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 476, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 484, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 477, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 485, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 478, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 486, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 479, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 487, 5)))
-StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), pyxb.binding.datatypes.string, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 480, 5)))
+StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), pyxb.binding.datatypes.string, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 488, 5)))
def _BuildAutomaton_29 ():
# Remove this helper function from the namespace after it is invoked
@@ -3543,63 +3606,63 @@ def _BuildAutomaton_29 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleSize')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 462, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleSize')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 470, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleMean')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 463, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleMean')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 471, 5))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleMed')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 464, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleMed')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 472, 5))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleStd')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 465, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleStd')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 473, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 466, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 474, 5))
st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumBins')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 467, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumBins')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 475, 5))
st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_6)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCounts')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 468, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCounts')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 476, 5))
st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_7)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinWidth')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 475, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinWidth')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 483, 5))
st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_8)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 476, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 484, 5))
st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_9)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 477, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 485, 5))
st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_10)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 478, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 486, 5))
st_11 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_11)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 479, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 487, 5))
st_12 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_12)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 480, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 488, 5))
st_13 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_13)
transitions = []
@@ -3664,13 +3727,13 @@ StatsContinuousDistType._Automaton = _BuildAutomaton_29()
-StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), pyxb.binding.datatypes.int, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 493, 5)))
+StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), pyxb.binding.datatypes.int, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 501, 5)))
-StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), CTD_ANON_11, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 494, 5)))
+StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), CTD_ANON_12, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 502, 5)))
-StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), pyxb.binding.datatypes.string, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 501, 5)))
+StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), pyxb.binding.datatypes.string, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 509, 5)))
-StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinLabels'), CTD_ANON_12, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 502, 5)))
+StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinLabels'), CTD_ANON_13, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 510, 5)))
def _BuildAutomaton_30 ():
# Remove this helper function from the namespace after it is invoked
@@ -3679,27 +3742,27 @@ def _BuildAutomaton_30 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumBins')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 493, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumBins')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 501, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCounts')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 494, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCounts')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 502, 5))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 501, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 509, 5))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinLabels')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 502, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinLabels')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 510, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
transitions = []
@@ -3728,15 +3791,15 @@ StatsDiscreteDistType._Automaton = _BuildAutomaton_30()
-StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits'), pyxb.binding.datatypes.string, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 520, 5)))
+StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits'), pyxb.binding.datatypes.string, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 528, 5)))
-StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits'), pyxb.binding.datatypes.string, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 521, 5)))
+StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits'), pyxb.binding.datatypes.string, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 529, 5)))
-StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StartTime'), pyxb.binding.datatypes.float, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 522, 5)))
+StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StartTime'), pyxb.binding.datatypes.float, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 530, 5)))
-StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval'), pyxb.binding.datatypes.float, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 523, 5)))
+StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval'), pyxb.binding.datatypes.float, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 531, 5)))
-StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Values'), CTD_ANON_13, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 524, 5)))
+StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Values'), CTD_ANON_14, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 532, 5)))
def _BuildAutomaton_31 ():
# Remove this helper function from the namespace after it is invoked
@@ -3745,34 +3808,34 @@ def _BuildAutomaton_31 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 524, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 532, 5))
counters.add(cc_1)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 520, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 528, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 521, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 529, 5))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StartTime')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 522, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StartTime')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 530, 5))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 523, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 531, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Values')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 524, 5))
+ symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Values')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 532, 5))
st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
transitions = []
@@ -3814,31 +3877,31 @@ def _BuildAutomaton_32 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 10, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 10, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 36, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 36, 5))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 41, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 41, 5))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 46, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 46, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 51, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 51, 5))
st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
transitions = []
@@ -3866,7 +3929,7 @@ def _BuildAutomaton_32 ():
transitions = []
st_5._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_19._Automaton = _BuildAutomaton_32()
+CTD_ANON_20._Automaton = _BuildAutomaton_32()
@@ -3878,31 +3941,31 @@ def _BuildAutomaton_33 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 10, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 10, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 36, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 36, 5))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 41, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 41, 5))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 46, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 46, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 51, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 51, 5))
st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
transitions = []
@@ -3930,7 +3993,7 @@ def _BuildAutomaton_33 ():
transitions = []
st_5._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_20._Automaton = _BuildAutomaton_33()
+CTD_ANON_21._Automaton = _BuildAutomaton_33()
@@ -3942,12 +4005,12 @@ def _BuildAutomaton_34 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(InputOutputDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(InputOutputDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -3967,26 +4030,26 @@ def _BuildAutomaton_35 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
@@ -4020,26 +4083,26 @@ def _BuildAutomaton_36 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(RecordedEventType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(RecordedEventType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(RecordedEventType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(RecordedEventType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(RecordedEventType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(RecordedEventType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
@@ -4066,7 +4129,7 @@ RecordedEventType._Automaton = _BuildAutomaton_36()
-SequencingChemistry._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DyeSet'), CTD_ANON_18, scope=SequencingChemistry, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 401, 5)))
+SequencingChemistry._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DyeSet'), CTD_ANON_19, scope=SequencingChemistry, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 401, 5)))
def _BuildAutomaton_37 ():
# Remove this helper function from the namespace after it is invoked
@@ -4075,27 +4138,27 @@ def _BuildAutomaton_37 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DyeSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 401, 5))
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DyeSet')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 401, 5))
st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
transitions = []
@@ -4130,9 +4193,11 @@ SequencingChemistry._Automaton = _BuildAutomaton_37()
-SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), CTD_ANON_9, scope=SequencingChemistryConfig, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 439, 5)))
+SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), CTD_ANON_9, scope=SequencingChemistryConfig, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 439, 5)))
+
+SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint'), pyxb.binding.datatypes.float, scope=SequencingChemistryConfig, documentation="The laser power at the input couple, needed to achieve predefined performance requirements based on a median 'golden' SMRT Cell.", location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 446, 5)))
-SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint'), pyxb.binding.datatypes.float, scope=SequencingChemistryConfig, documentation="The laser power at the input couple, needed to achieve predefined performance requirements based on a median 'golden' SMRT Cell.", location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 446, 5)))
+SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TargetSNR'), CTD_ANON_10, scope=SequencingChemistryConfig, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 451, 5)))
def _BuildAutomaton_38 ():
# Remove this helper function from the namespace after it is invoked
@@ -4141,33 +4206,37 @@ def _BuildAutomaton_38 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analogs')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 439, 5))
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analogs')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 439, 5))
st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 446, 5))
+ final_update = None
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 446, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
+ final_update = set()
+ symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TargetSNR')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 451, 5))
+ st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
+ states.append(st_5)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True) ]))
@@ -4197,16 +4266,20 @@ def _BuildAutomaton_38 ():
]))
st_3._set_transitionSet(transitions)
transitions = []
+ transitions.append(fac.Transition(st_5, [
+ ]))
st_4._set_transitionSet(transitions)
+ transitions = []
+ st_5._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
SequencingChemistryConfig._Automaton = _BuildAutomaton_38()
-IndexedDataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), CTD_ANON_4, scope=IndexedDataType, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 256, 1)))
+IndexedDataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), CTD_ANON_4, scope=IndexedDataType, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 256, 1)))
-IndexedDataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FileIndices'), CTD_ANON_5, scope=IndexedDataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 275, 5)))
+IndexedDataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FileIndices'), CTD_ANON_5, scope=IndexedDataType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 275, 5)))
def _BuildAutomaton_39 ():
# Remove this helper function from the namespace after it is invoked
@@ -4215,26 +4288,26 @@ def _BuildAutomaton_39 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 275, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 275, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 286, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 286, 5))
counters.add(cc_2)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndices')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 275, 5))
+ symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndices')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 275, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 286, 5))
+ symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 286, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
@@ -4261,9 +4334,9 @@ IndexedDataType._Automaton = _BuildAutomaton_39()
-SupplyKitBinding._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Control'), SupplyKitControl, scope=SupplyKitBinding, documentation='Defines the binding kit internal control name. Present when used, otherwise not used if not defined. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 542, 5)))
+SupplyKitBinding._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Control'), SupplyKitControl, scope=SupplyKitBinding, documentation='Defines the binding kit internal control name. Present when used, otherwise not used if not defined. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 550, 5)))
-SupplyKitBinding._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed'), pyxb.binding.datatypes.boolean, scope=SupplyKitBinding, documentation='True if the control was used during run, otherwise false. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 547, 5)))
+SupplyKitBinding._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed'), pyxb.binding.datatypes.boolean, scope=SupplyKitBinding, documentation='True if the control was used during run, otherwise false. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 555, 5)))
def _BuildAutomaton_40 ():
# Remove this helper function from the namespace after it is invoked
@@ -4272,40 +4345,40 @@ def _BuildAutomaton_40 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 542, 5))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 550, 5))
counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 547, 5))
+ cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 555, 5))
counters.add(cc_4)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Control')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 542, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Control')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 550, 5))
st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_4, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 547, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 555, 5))
st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
transitions = []
@@ -4354,7 +4427,7 @@ SupplyKitBinding._Automaton = _BuildAutomaton_40()
-SupplyKitCellPack._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), pyxb.binding.datatypes.string, scope=SupplyKitCellPack, documentation='Defines the internal chip layout name, if any. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 563, 5)))
+SupplyKitCellPack._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), pyxb.binding.datatypes.string, scope=SupplyKitCellPack, documentation='Defines the internal chip layout name, if any. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 571, 5)))
def _BuildAutomaton_41 ():
# Remove this helper function from the namespace after it is invoked
@@ -4363,33 +4436,33 @@ def _BuildAutomaton_41 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 563, 5))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 571, 5))
counters.add(cc_3)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 563, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 571, 5))
st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
transitions = []
@@ -4426,7 +4499,7 @@ SupplyKitCellPack._Automaton = _BuildAutomaton_41()
-SupplyKitControl._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName'), pyxb.binding.datatypes.string, scope=SupplyKitControl, documentation='Defines the internal control name, if any. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 584, 5)))
+SupplyKitControl._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName'), pyxb.binding.datatypes.string, scope=SupplyKitControl, documentation='Defines the internal control name, if any. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 592, 5)))
def _BuildAutomaton_42 ():
# Remove this helper function from the namespace after it is invoked
@@ -4435,33 +4508,33 @@ def _BuildAutomaton_42 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 584, 5))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 592, 5))
counters.add(cc_3)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 584, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 592, 5))
st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
transitions = []
@@ -4498,13 +4571,13 @@ SupplyKitControl._Automaton = _BuildAutomaton_42()
-SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Left adapter DNA sequence.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 600, 5)))
+SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Left adapter DNA sequence.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 608, 5)))
-SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 605, 5)))
+SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 613, 5)))
-SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Right adapter DNA sequence. If not specified, a symmetric adapter model is inferred, where the left adapter sequence is used wherever needed.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 606, 5)))
+SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Right adapter DNA sequence. If not specified, a symmetric adapter model is inferred, where the left adapter sequence is used wherever needed.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 614, 5)))
-SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Right primaer sequence. If not specified, a symmetric model is inferred, where the left primer sequence is used wherever needed.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 611, 5)))
+SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Right primaer sequence. If not specified, a symmetric model is inferred, where the left primer sequence is used wherever needed.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 619, 5)))
def _BuildAutomaton_43 ():
# Remove this helper function from the namespace after it is invoked
@@ -4513,54 +4586,54 @@ def _BuildAutomaton_43 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 600, 5))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 608, 5))
counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 605, 5))
+ cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 613, 5))
counters.add(cc_4)
- cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 606, 5))
+ cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 614, 5))
counters.add(cc_5)
- cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 611, 5))
+ cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 619, 5))
counters.add(cc_6)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 600, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 608, 5))
st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_4, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 605, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 613, 5))
st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_5, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 606, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 614, 5))
st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_6, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 611, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 619, 5))
st_6 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_6)
transitions = []
@@ -4646,26 +4719,26 @@ def _BuildAutomaton_44 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 275, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 275, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 286, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 286, 5))
counters.add(cc_2)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_22._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndices')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 275, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_22._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndices')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 275, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 286, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_22._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 286, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
@@ -4687,5 +4760,5 @@ def _BuildAutomaton_44 ():
fac.UpdateInstruction(cc_2, True) ]))
st_2._set_transitionSet(transitions)
return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_21._Automaton = _BuildAutomaton_44()
+CTD_ANON_22._Automaton = _BuildAutomaton_44()
diff --git a/pbcore/io/dataset/_pbds.py b/pbcore/io/dataset/_pbds.py
deleted file mode 100755
index 9c3fbf2..0000000
--- a/pbcore/io/dataset/_pbds.py
+++ /dev/null
@@ -1,3639 +0,0 @@
-# ./_pbds.py
-# -*- coding: utf-8 -*-
-# PyXB bindings for NM:3dc5b3a98cc462befd746fd05a18986be8ba2691
-# Generated 2015-10-20 16:54:17.029537 by PyXB version 1.2.4 using Python 2.7.6.final.0
-# Namespace http://pacificbiosciences.com/PacBioDatasets.xsd [xmlns:pbds]
-
-from __future__ import unicode_literals
-import pyxb
-import pyxb.binding
-import pyxb.binding.saxer
-import io
-import pyxb.utils.utility
-import pyxb.utils.domutils
-import sys
-import pyxb.utils.six as _six
-
-# Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:df41546a-7785-11e5-88f4-001a4acb6b14')
-
-# Version of PyXB used to generate the bindings
-_PyXBVersion = '1.2.4'
-# Generated bindings are not compatible across PyXB versions
-if pyxb.__version__ != _PyXBVersion:
- raise pyxb.PyXBVersionError(_PyXBVersion)
-
-# Import bindings for namespaces imported into schema
-import pyxb.binding.datatypes
-import _pbsample as _ImportedBinding__pbsample
-import _pbmeta as _ImportedBinding__pbmeta
-import _pbbase as _ImportedBinding__pbbase
-
-# NOTE: All namespace declarations are reserved within the binding
-Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioDatasets.xsd', create_if_missing=True)
-Namespace.configureCategories(['typeBinding', 'elementBinding'])
-_Namespace_pbmeta = _ImportedBinding__pbmeta.Namespace
-_Namespace_pbmeta.configureCategories(['typeBinding', 'elementBinding'])
-_Namespace_pbsample = _ImportedBinding__pbsample.Namespace
-_Namespace_pbsample.configureCategories(['typeBinding', 'elementBinding'])
-_Namespace_pbbase = _ImportedBinding__pbbase.Namespace
-_Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding'])
-
-def CreateFromDocument (xml_text, default_namespace=None, location_base=None):
- """Parse the given XML and use the document element to create a
- Python instance.
-
- @param xml_text An XML document. This should be data (Python 2
- str or Python 3 bytes), or a text (Python 2 unicode or Python 3
- str) in the L{pyxb._InputEncoding} encoding.
-
- @keyword default_namespace The L{pyxb.Namespace} instance to use as the
- default namespace where there is no default namespace in scope.
- If unspecified or C{None}, the namespace of the module containing
- this function will be used.
-
- @keyword location_base: An object to be recorded as the base of all
- L{pyxb.utils.utility.Location} instances associated with events and
- objects handled by the parser. You might pass the URI from which
- the document was obtained.
- """
-
- if pyxb.XMLStyle_saxer != pyxb._XMLStyle:
- dom = pyxb.utils.domutils.StringToDOM(xml_text)
- return CreateFromDOM(dom.documentElement, default_namespace=default_namespace)
- if default_namespace is None:
- default_namespace = Namespace.fallbackNamespace()
- saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base)
- handler = saxer.getContentHandler()
- xmld = xml_text
- if isinstance(xmld, _six.text_type):
- xmld = xmld.encode(pyxb._InputEncoding)
- saxer.parse(io.BytesIO(xmld))
- instance = handler.rootObject()
- return instance
-
-def CreateFromDOM (node, default_namespace=None):
- """Create a Python instance from the given DOM node.
- The node tag must correspond to an element declaration in this module.
-
- @deprecated: Forcing use of DOM interface is unnecessary; use L{CreateFromDocument}."""
- if default_namespace is None:
- default_namespace = Namespace.fallbackNamespace()
- return pyxb.binding.basis.element.AnyCreateFromDOM(node, default_namespace)
-
-
-# Atomic simple type: [anonymous]
-class STD_ANON (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin):
-
- """An atomic simple type."""
-
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 198, 6)
- _Documentation = None
-STD_ANON._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON, enum_prefix=None)
-STD_ANON.Instrument = STD_ANON._CF_enumeration.addEnumeration(unicode_value='Instrument', tag='Instrument')
-STD_ANON.User = STD_ANON._CF_enumeration.addEnumeration(unicode_value='User', tag='User')
-STD_ANON.AnalysisJob = STD_ANON._CF_enumeration.addEnumeration(unicode_value='AnalysisJob', tag='AnalysisJob')
-STD_ANON._InitializeFacetMap(STD_ANON._CF_enumeration)
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 111, 2)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Subset uses Python identifier Subset
- __Subset = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Subset'), 'Subset', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_httppacificbiosciences_comPacBioDatasets_xsdSubset', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 113, 4), )
-
-
- Subset = property(__Subset.value, __Subset.set, None, None)
-
- _ElementMap.update({
- __Subset.name() : __Subset
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType with content type ELEMENT_ONLY
-class DataSetMetadataType (pyxb.binding.basis.complexTypeDefinition):
- """Extend this type to provide DataSetMetadata element in each DataSet."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadataType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 182, 1)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength uses Python identifier TotalLength
- __TotalLength = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TotalLength'), 'TotalLength', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdTotalLength', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 187, 3), )
-
-
- TotalLength = property(__TotalLength.value, __TotalLength.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords uses Python identifier NumRecords
- __NumRecords = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumRecords'), 'NumRecords', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdNumRecords', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 188, 3), )
-
-
- NumRecords = property(__NumRecords.value, __NumRecords.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance uses Python identifier Provenance
- __Provenance = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Provenance'), 'Provenance', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdProvenance', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3), )
-
-
- Provenance = property(__Provenance.value, __Provenance.set, None, None)
-
- _ElementMap.update({
- __TotalLength.name() : __TotalLength,
- __NumRecords.name() : __NumRecords,
- __Provenance.name() : __Provenance
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'DataSetMetadataType', DataSetMetadataType)
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetRootType with content type ELEMENT_ONLY
-class DataSetRootType (pyxb.binding.basis.complexTypeDefinition):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetRootType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetRootType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 210, 1)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSet uses Python identifier AlignmentSet
- __AlignmentSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), 'AlignmentSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdAlignmentSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 8, 1), )
-
-
- AlignmentSet = property(__AlignmentSet.value, __AlignmentSet.set, None, 'DataSets for aligned subreads and CCS reads.')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSet uses Python identifier BarcodeSet
- __BarcodeSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), 'BarcodeSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdBarcodeSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 18, 1), )
-
-
- BarcodeSet = property(__BarcodeSet.value, __BarcodeSet.set, None, 'DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ConsensusAlignmentSet uses Python identifier ConsensusAlignmentSet
- __ConsensusAlignmentSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), 'ConsensusAlignmentSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdConsensusAlignmentSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 28, 1), )
-
-
- ConsensusAlignmentSet = property(__ConsensusAlignmentSet.value, __ConsensusAlignmentSet.set, None, 'DataSets of aligned CCS reads.')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ConsensusReadSet uses Python identifier ConsensusReadSet
- __ConsensusReadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), 'ConsensusReadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdConsensusReadSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 38, 1), )
-
-
- ConsensusReadSet = property(__ConsensusReadSet.value, __ConsensusReadSet.set, None, 'DataSets of CCS reads (typically in unaligned BAM format).')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSet uses Python identifier ContigSet
- __ContigSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), 'ContigSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdContigSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 71, 1), )
-
-
- ContigSet = property(__ContigSet.value, __ContigSet.set, None, 'DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}HdfSubreadSet uses Python identifier HdfSubreadSet
- __HdfSubreadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), 'HdfSubreadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdHdfSubreadSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 83, 1), )
-
-
- HdfSubreadSet = property(__HdfSubreadSet.value, __HdfSubreadSet.set, None, 'DataSets of subreads in bax.h5 or bas.h5 format.')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReferenceSet uses Python identifier ReferenceSet
- __ReferenceSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), 'ReferenceSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdReferenceSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 93, 1), )
-
-
- ReferenceSet = property(__ReferenceSet.value, __ReferenceSet.set, None, 'DataSets of reference sequences. Replaces the reference.info.xml.')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSet uses Python identifier SubreadSet
- __SubreadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), 'SubreadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdSubreadSet', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 103, 1), )
-
-
- SubreadSet = property(__SubreadSet.value, __SubreadSet.set, None, None)
-
- _ElementMap.update({
- __AlignmentSet.name() : __AlignmentSet,
- __BarcodeSet.name() : __BarcodeSet,
- __ConsensusAlignmentSet.name() : __ConsensusAlignmentSet,
- __ConsensusReadSet.name() : __ConsensusReadSet,
- __ContigSet.name() : __ContigSet,
- __HdfSubreadSet.name() : __HdfSubreadSet,
- __ReferenceSet.name() : __ReferenceSet,
- __SubreadSet.name() : __SubreadSet
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'DataSetRootType', DataSetRootType)
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
- """The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 231, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filter uses Python identifier Filter
- __Filter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filter'), 'Filter', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON__httppacificbiosciences_comPacBioDatasets_xsdFilter', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 233, 8), )
-
-
- Filter = property(__Filter.value, __Filter.set, None, None)
-
- _ElementMap.update({
- __Filter.name() : __Filter
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 238, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSet uses Python identifier DataSet
- __DataSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), 'DataSet', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioDatasets_xsdDataSet', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 81, 1), )
-
-
- DataSet = property(__DataSet.value, __DataSet.set, None, None)
-
- _ElementMap.update({
- __DataSet.name() : __DataSet
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 255, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AdapterDimerFraction uses Python identifier AdapterDimerFraction
- __AdapterDimerFraction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction'), 'AdapterDimerFraction', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdAdapterDimerFraction', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 257, 8), )
-
-
- AdapterDimerFraction = property(__AdapterDimerFraction.value, __AdapterDimerFraction.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ShortInsertFraction uses Python identifier ShortInsertFraction
- __ShortInsertFraction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction'), 'ShortInsertFraction', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdShortInsertFraction', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 258, 8), )
-
-
- ShortInsertFraction = property(__ShortInsertFraction.value, __ShortInsertFraction.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}NumSequencingZmws uses Python identifier NumSequencingZmws
- __NumSequencingZmws = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws'), 'NumSequencingZmws', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdNumSequencingZmws', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 259, 8), )
-
-
- NumSequencingZmws = property(__NumSequencingZmws.value, __NumSequencingZmws.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ProdDist uses Python identifier ProdDist
- __ProdDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ProdDist'), 'ProdDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdProdDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 260, 8), )
-
-
- ProdDist = property(__ProdDist.value, __ProdDist.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadTypeDist uses Python identifier ReadTypeDist
- __ReadTypeDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist'), 'ReadTypeDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadTypeDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 261, 8), )
-
-
- ReadTypeDist = property(__ReadTypeDist.value, __ReadTypeDist.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadLenDist uses Python identifier ReadLenDist
- __ReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist'), 'ReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 262, 8), )
-
-
- ReadLenDist = property(__ReadLenDist.value, __ReadLenDist.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadQualDist uses Python identifier ReadQualDist
- __ReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist'), 'ReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 263, 8), )
-
-
- ReadQualDist = property(__ReadQualDist.value, __ReadQualDist.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ControlReadLenDist uses Python identifier ControlReadLenDist
- __ControlReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist'), 'ControlReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdControlReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 264, 8), )
-
-
- ControlReadLenDist = property(__ControlReadLenDist.value, __ControlReadLenDist.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ControlReadQualDist uses Python identifier ControlReadQualDist
- __ControlReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist'), 'ControlReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdControlReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 265, 8), )
-
-
- ControlReadQualDist = property(__ControlReadQualDist.value, __ControlReadQualDist.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}MedianInsertDist uses Python identifier MedianInsertDist
- __MedianInsertDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist'), 'MedianInsertDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdMedianInsertDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 266, 8), )
-
-
- MedianInsertDist = property(__MedianInsertDist.value, __MedianInsertDist.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}InsertReadLenDist uses Python identifier InsertReadLenDist
- __InsertReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist'), 'InsertReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdInsertReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 267, 8), )
-
-
- InsertReadLenDist = property(__InsertReadLenDist.value, __InsertReadLenDist.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}InsertReadQualDist uses Python identifier InsertReadQualDist
- __InsertReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist'), 'InsertReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdInsertReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 268, 8), )
-
-
- InsertReadQualDist = property(__InsertReadQualDist.value, __InsertReadQualDist.set, None, None)
-
- _ElementMap.update({
- __AdapterDimerFraction.name() : __AdapterDimerFraction,
- __ShortInsertFraction.name() : __ShortInsertFraction,
- __NumSequencingZmws.name() : __NumSequencingZmws,
- __ProdDist.name() : __ProdDist,
- __ReadTypeDist.name() : __ReadTypeDist,
- __ReadLenDist.name() : __ReadLenDist,
- __ReadQualDist.name() : __ReadQualDist,
- __ControlReadLenDist.name() : __ControlReadLenDist,
- __ControlReadQualDist.name() : __ControlReadQualDist,
- __MedianInsertDist.name() : __MedianInsertDist,
- __InsertReadLenDist.name() : __InsertReadLenDist,
- __InsertReadQualDist.name() : __InsertReadQualDist
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition):
- """The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 311, 6)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filter uses Python identifier Filter
- __Filter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filter'), 'Filter', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioDatasets_xsdFilter', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 313, 8), )
-
-
- Filter = property(__Filter.value, __Filter.set, None, None)
-
- _ElementMap.update({
- __Filter.name() : __Filter
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetMetadataType with content type ELEMENT_ONLY
-class AlignmentSetMetadataType (DataSetMetadataType):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetMetadataType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AlignmentSetMetadataType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 117, 1)
- _ElementMap = DataSetMetadataType._ElementMap.copy()
- _AttributeMap = DataSetMetadataType._AttributeMap.copy()
- # Base type is DataSetMetadataType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Aligner uses Python identifier Aligner
- __Aligner = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Aligner'), 'Aligner', '__httppacificbiosciences_comPacBioDatasets_xsd_AlignmentSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAligner', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 121, 5), )
-
-
- Aligner = property(__Aligner.value, __Aligner.set, None, None)
-
-
- # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
- _ElementMap.update({
- __Aligner.name() : __Aligner
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'AlignmentSetMetadataType', AlignmentSetMetadataType)
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetMetadataType with content type ELEMENT_ONLY
-class BarcodeSetMetadataType (DataSetMetadataType):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetMetadataType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BarcodeSetMetadataType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 138, 1)
- _ElementMap = DataSetMetadataType._ElementMap.copy()
- _AttributeMap = DataSetMetadataType._AttributeMap.copy()
- # Base type is DataSetMetadataType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeConstruction uses Python identifier BarcodeConstruction
- __BarcodeConstruction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction'), 'BarcodeConstruction', '__httppacificbiosciences_comPacBioDatasets_xsd_BarcodeSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdBarcodeConstruction', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 142, 5), )
-
-
- BarcodeConstruction = property(__BarcodeConstruction.value, __BarcodeConstruction.set, None, None)
-
-
- # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
- _ElementMap.update({
- __BarcodeConstruction.name() : __BarcodeConstruction
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'BarcodeSetMetadataType', BarcodeSetMetadataType)
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetMetadataType with content type ELEMENT_ONLY
-class ContigSetMetadataType (DataSetMetadataType):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetMetadataType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ContigSetMetadataType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 159, 1)
- _ElementMap = DataSetMetadataType._ElementMap.copy()
- _AttributeMap = DataSetMetadataType._AttributeMap.copy()
- # Base type is DataSetMetadataType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Contigs uses Python identifier Contigs
- __Contigs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), 'Contigs', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdContigs', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 48, 1), )
-
-
- Contigs = property(__Contigs.value, __Contigs.set, None, 'List of contigs in a ContigSet')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Organism uses Python identifier Organism
- __Organism = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdOrganism', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 163, 5), )
-
-
- Organism = property(__Organism.value, __Organism.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Ploidy uses Python identifier Ploidy
- __Ploidy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Ploidy'), 'Ploidy', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdPloidy', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 164, 5), )
-
-
- Ploidy = property(__Ploidy.value, __Ploidy.set, None, None)
-
-
- # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
- _ElementMap.update({
- __Contigs.name() : __Contigs,
- __Organism.name() : __Organism,
- __Ploidy.name() : __Ploidy
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'ContigSetMetadataType', ContigSetMetadataType)
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 190, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}CommonServicesInstanceId uses Python identifier CommonServicesInstanceId
- __CommonServicesInstanceId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId'), 'CommonServicesInstanceId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdCommonServicesInstanceId', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 192, 6), )
-
-
- CommonServicesInstanceId = property(__CommonServicesInstanceId.value, __CommonServicesInstanceId.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}CreatorUserId uses Python identifier CreatorUserId
- __CreatorUserId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId'), 'CreatorUserId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdCreatorUserId', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 193, 6), )
-
-
- CreatorUserId = property(__CreatorUserId.value, __CreatorUserId.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ParentJobId uses Python identifier ParentJobId
- __ParentJobId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId'), 'ParentJobId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdParentJobId', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 194, 6), )
-
-
- ParentJobId = property(__ParentJobId.value, __ParentJobId.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ParentTool uses Python identifier ParentTool
- __ParentTool = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ParentTool'), 'ParentTool', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdParentTool', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 195, 6), )
-
-
- ParentTool = property(__ParentTool.value, __ParentTool.set, None, None)
-
-
- # Attribute CreatedBy uses Python identifier CreatedBy
- __CreatedBy = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'CreatedBy'), 'CreatedBy', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_CreatedBy', STD_ANON, required=True)
- __CreatedBy._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 197, 5)
- __CreatedBy._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 197, 5)
-
- CreatedBy = property(__CreatedBy.value, __CreatedBy.set, None, None)
-
- _ElementMap.update({
- __CommonServicesInstanceId.name() : __CommonServicesInstanceId,
- __CreatorUserId.name() : __CreatorUserId,
- __ParentJobId.name() : __ParentJobId,
- __ParentTool.name() : __ParentTool
- })
- _AttributeMap.update({
- __CreatedBy.name() : __CreatedBy
- })
-
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetMetadataType with content type ELEMENT_ONLY
-class ReadSetMetadataType (DataSetMetadataType):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetMetadataType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReadSetMetadataType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 248, 1)
- _ElementMap = DataSetMetadataType._ElementMap.copy()
- _AttributeMap = DataSetMetadataType._AttributeMap.copy()
- # Base type is DataSetMetadataType
-
- # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Collections uses Python identifier Collections
- __Collections = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections'), 'Collections', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollections', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 20, 1), )
-
-
- Collections = property(__Collections.value, __Collections.set, None, 'A set of acquisition definitions')
-
-
- # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}SummaryStats uses Python identifier SummaryStats
- __SummaryStats = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats'), 'SummaryStats', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdSummaryStats', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 254, 5), )
-
-
- SummaryStats = property(__SummaryStats.value, __SummaryStats.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamples uses Python identifier BioSamples
- __BioSamples = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples'), 'BioSamples', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamples', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 134, 1), )
-
-
- BioSamples = property(__BioSamples.value, __BioSamples.set, None, None)
-
- _ElementMap.update({
- __Collections.name() : __Collections,
- __SummaryStats.name() : __SummaryStats,
- __BioSamples.name() : __BioSamples
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'ReadSetMetadataType', ReadSetMetadataType)
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetMetadataType with content type ELEMENT_ONLY
-class SubreadSetMetadataType (DataSetMetadataType):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetMetadataType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubreadSetMetadataType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 288, 1)
- _ElementMap = DataSetMetadataType._ElementMap.copy()
- _AttributeMap = DataSetMetadataType._AttributeMap.copy()
- # Base type is DataSetMetadataType
-
- # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AverageSubreadLength uses Python identifier AverageSubreadLength
- __AverageSubreadLength = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength'), 'AverageSubreadLength', '__httppacificbiosciences_comPacBioDatasets_xsd_SubreadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAverageSubreadLength', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 292, 5), )
-
-
- AverageSubreadLength = property(__AverageSubreadLength.value, __AverageSubreadLength.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AverageSubreadQuality uses Python identifier AverageSubreadQuality
- __AverageSubreadQuality = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality'), 'AverageSubreadQuality', '__httppacificbiosciences_comPacBioDatasets_xsd_SubreadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAverageSubreadQuality', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 293, 5), )
-
-
- AverageSubreadQuality = property(__AverageSubreadQuality.value, __AverageSubreadQuality.set, None, None)
-
- _ElementMap.update({
- __AverageSubreadLength.name() : __AverageSubreadLength,
- __AverageSubreadQuality.name() : __AverageSubreadQuality
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'SubreadSetMetadataType', SubreadSetMetadataType)
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_6 (_ImportedBinding__pbbase.BaseEntityType):
- """List of contigs in a ContigSet"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 52, 2)
- _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
- _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
- # Base type is _ImportedBinding__pbbase.BaseEntityType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Contig uses Python identifier Contig
- __Contig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Contig'), 'Contig', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioDatasets_xsdContig', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 56, 6), )
-
-
- Contig = property(__Contig.value, __Contig.set, None, None)
-
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
- _ElementMap.update({
- __Contig.name() : __Contig
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_7 (_ImportedBinding__pbbase.BaseEntityType):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 57, 7)
- _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
- _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
- # Base type is _ImportedBinding__pbbase.BaseEntityType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Length uses Python identifier Length
- __Length = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Length'), 'Length', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_7_Length', pyxb.binding.datatypes.anySimpleType, required=True)
- __Length._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 60, 10)
- __Length._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 60, 10)
-
- Length = property(__Length.value, __Length.set, None, None)
-
-
- # Attribute Digest uses Python identifier Digest
- __Digest = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Digest'), 'Digest', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_7_Digest', pyxb.binding.datatypes.anySimpleType, required=True)
- __Digest._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 61, 10)
- __Digest._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 61, 10)
-
- Digest = property(__Digest.value, __Digest.set, None, None)
-
- _ElementMap.update({
-
- })
- _AttributeMap.update({
- __Length.name() : __Length,
- __Digest.name() : __Digest
- })
-
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType with content type ELEMENT_ONLY
-class DataSetType (_ImportedBinding__pbbase.StrictEntityType):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 222, 1)
- _ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy()
- _AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy()
- # Base type is _ImportedBinding__pbbase.StrictEntityType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources uses Python identifier ExternalResources
- __ExternalResources = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources'), 'ExternalResources', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResources', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 256, 1), )
-
-
- ExternalResources = property(__ExternalResources.value, __ExternalResources.set, None, 'Pointers to data that do not reside inside the parent structure')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filters uses Python identifier Filters
- __Filters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filters'), 'Filters', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioDatasets_xsdFilters', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5), )
-
-
- Filters = property(__Filters.value, __Filters.set, None, 'The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets uses Python identifier DataSets
- __DataSets = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSets'), 'DataSets', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSets', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5), )
-
-
- DataSets = property(__DataSets.value, __DataSets.set, None, None)
-
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
- __ExternalResources.name() : __ExternalResources,
- __Filters.name() : __Filters,
- __DataSets.name() : __DataSets
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'DataSetType', DataSetType)
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubsetType with content type ELEMENT_ONLY
-class SubsetType (_ImportedBinding__pbbase.StrictEntityType):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubsetType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubsetType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 303, 1)
- _ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy()
- _AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy()
- # Base type is _ImportedBinding__pbbase.StrictEntityType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataPointers uses Python identifier DataPointers
- __DataPointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers'), 'DataPointers', '__httppacificbiosciences_comPacBioDatasets_xsd_SubsetType_httppacificbiosciences_comPacBioBaseDataModel_xsdDataPointers', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 222, 1), )
-
-
- DataPointers = property(__DataPointers.value, __DataPointers.set, None, 'Pointer list to UniqueIds in the system')
-
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filters uses Python identifier Filters
- __Filters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filters'), 'Filters', '__httppacificbiosciences_comPacBioDatasets_xsd_SubsetType_httppacificbiosciences_comPacBioDatasets_xsdFilters', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 307, 5), )
-
-
- Filters = property(__Filters.value, __Filters.set, None, 'The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.')
-
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
- __DataPointers.name() : __DataPointers,
- __Filters.name() : __Filters
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'SubsetType', SubsetType)
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_8 (DataSetType):
- """DataSets of CCS reads (typically in unaligned BAM format)."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 42, 2)
- _ElementMap = DataSetType._ElementMap.copy()
- _AttributeMap = DataSetType._AttributeMap.copy()
- # Base type is DataSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType with content type ELEMENT_ONLY
-class AlignmentSetType (DataSetType):
- """Type for DataSets consisting of aligned subreads and CCS reads."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AlignmentSetType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 126, 1)
- _ElementMap = DataSetType._ElementMap.copy()
- _AttributeMap = DataSetType._AttributeMap.copy()
- # Base type is DataSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
- __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_AlignmentSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 133, 5), )
-
-
- DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
-
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
- __DataSetMetadata.name() : __DataSetMetadata
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'AlignmentSetType', AlignmentSetType)
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetType with content type ELEMENT_ONLY
-class BarcodeSetType (DataSetType):
- """Type for the Barcode DataSet."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BarcodeSetType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 147, 1)
- _ElementMap = DataSetType._ElementMap.copy()
- _AttributeMap = DataSetType._AttributeMap.copy()
- # Base type is DataSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
- __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_BarcodeSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 154, 5), )
-
-
- DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
-
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
- __DataSetMetadata.name() : __DataSetMetadata
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'BarcodeSetType', BarcodeSetType)
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType with content type ELEMENT_ONLY
-class ContigSetType (DataSetType):
- """Type for a Contig DataSet."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ContigSetType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 170, 1)
- _ElementMap = DataSetType._ElementMap.copy()
- _AttributeMap = DataSetType._AttributeMap.copy()
- # Base type is DataSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
- __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 177, 5), )
-
-
- DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
-
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
- __DataSetMetadata.name() : __DataSetMetadata
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'ContigSetType', ContigSetType)
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType with content type ELEMENT_ONLY
-class ReadSetType (DataSetType):
- """Type for DataSets consisting of unaligned subreads and CCS reads DataSets"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReadSetType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 276, 1)
- _ElementMap = DataSetType._ElementMap.copy()
- _AttributeMap = DataSetType._AttributeMap.copy()
- # Base type is DataSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata
- __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5), )
-
-
- DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None)
-
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
- __DataSetMetadata.name() : __DataSetMetadata
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'ReadSetType', ReadSetType)
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_9 (AlignmentSetType):
- """DataSets for aligned subreads and CCS reads."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 12, 2)
- _ElementMap = AlignmentSetType._ElementMap.copy()
- _AttributeMap = AlignmentSetType._AttributeMap.copy()
- # Base type is AlignmentSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_10 (BarcodeSetType):
- """DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 22, 2)
- _ElementMap = BarcodeSetType._ElementMap.copy()
- _AttributeMap = BarcodeSetType._AttributeMap.copy()
- # Base type is BarcodeSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_11 (AlignmentSetType):
- """DataSets of aligned CCS reads."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 32, 2)
- _ElementMap = AlignmentSetType._ElementMap.copy()
- _AttributeMap = AlignmentSetType._AttributeMap.copy()
- # Base type is AlignmentSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_12 (ContigSetType):
- """DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP)."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 75, 2)
- _ElementMap = ContigSetType._ElementMap.copy()
- _AttributeMap = ContigSetType._AttributeMap.copy()
- # Base type is ContigSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_13 (ReadSetType):
- """DataSets of subreads in bax.h5 or bas.h5 format."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 87, 2)
- _ElementMap = ReadSetType._ElementMap.copy()
- _AttributeMap = ReadSetType._AttributeMap.copy()
- # Base type is ReadSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_14 (ContigSetType):
- """DataSets of reference sequences. Replaces the reference.info.xml."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 97, 2)
- _ElementMap = ContigSetType._ElementMap.copy()
- _AttributeMap = ContigSetType._AttributeMap.copy()
- # Base type is ContigSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetType with content type ELEMENT_ONLY
-class SubreadSetType (ReadSetType):
- """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubreadSetType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 298, 1)
- _ElementMap = ReadSetType._ElementMap.copy()
- _AttributeMap = ReadSetType._AttributeMap.copy()
- # Base type is ReadSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'SubreadSetType', SubreadSetType)
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_15 (SubreadSetType):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 104, 2)
- _ElementMap = SubreadSetType._ElementMap.copy()
- _AttributeMap = SubreadSetType._AttributeMap.copy()
- # Base type is SubreadSetType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType
-
- # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType
- _ElementMap.update({
-
- })
- _AttributeMap.update({
-
- })
-
-
-
-DataSetRoot = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetRoot'), DataSetRootType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 82, 1))
-Namespace.addCategoryObject('elementBinding', DataSetRoot.name().localName(), DataSetRoot)
-
-Subsets = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Subsets'), CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 110, 1))
-Namespace.addCategoryObject('elementBinding', Subsets.name().localName(), Subsets)
-
-Contigs = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), CTD_ANON_6, documentation='List of contigs in a ContigSet', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 48, 1))
-Namespace.addCategoryObject('elementBinding', Contigs.name().localName(), Contigs)
-
-DataSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), DataSetType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 81, 1))
-Namespace.addCategoryObject('elementBinding', DataSet.name().localName(), DataSet)
-
-ConsensusReadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), CTD_ANON_8, documentation='DataSets of CCS reads (typically in unaligned BAM format).', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 38, 1))
-Namespace.addCategoryObject('elementBinding', ConsensusReadSet.name().localName(), ConsensusReadSet)
-
-AlignmentSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), CTD_ANON_9, documentation='DataSets for aligned subreads and CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 8, 1))
-Namespace.addCategoryObject('elementBinding', AlignmentSet.name().localName(), AlignmentSet)
-
-BarcodeSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), CTD_ANON_10, documentation='DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 18, 1))
-Namespace.addCategoryObject('elementBinding', BarcodeSet.name().localName(), BarcodeSet)
-
-ConsensusAlignmentSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), CTD_ANON_11, documentation='DataSets of aligned CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 28, 1))
-Namespace.addCategoryObject('elementBinding', ConsensusAlignmentSet.name().localName(), ConsensusAlignmentSet)
-
-ContigSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), CTD_ANON_12, documentation='DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 71, 1))
-Namespace.addCategoryObject('elementBinding', ContigSet.name().localName(), ContigSet)
-
-HdfSubreadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), CTD_ANON_13, documentation='DataSets of subreads in bax.h5 or bas.h5 format.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 83, 1))
-Namespace.addCategoryObject('elementBinding', HdfSubreadSet.name().localName(), HdfSubreadSet)
-
-ReferenceSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), CTD_ANON_14, documentation='DataSets of reference sequences. Replaces the reference.info.xml.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 93, 1))
-Namespace.addCategoryObject('elementBinding', ReferenceSet.name().localName(), ReferenceSet)
-
-SubreadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), CTD_ANON_15, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 103, 1))
-Namespace.addCategoryObject('elementBinding', SubreadSet.name().localName(), SubreadSet)
-
-
-
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Subset'), SubsetType, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 113, 4)))
-
-def _BuildAutomaton ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton
- del _BuildAutomaton
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Subset')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 113, 4))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON._Automaton = _BuildAutomaton()
-
-
-
-
-DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TotalLength'), pyxb.binding.datatypes.long, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 187, 3)))
-
-DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumRecords'), pyxb.binding.datatypes.int, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 188, 3)))
-
-DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Provenance'), CTD_ANON_5, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3)))
-
-def _BuildAutomaton_ ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_
- del _BuildAutomaton_
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- counters.add(cc_0)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 187, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 188, 3))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, True) ]))
- st_2._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-DataSetMetadataType._Automaton = _BuildAutomaton_()
-
-
-
-
-DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), CTD_ANON_9, scope=DataSetRootType, documentation='DataSets for aligned subreads and CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 8, 1)))
-
-DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), CTD_ANON_10, scope=DataSetRootType, documentation='DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 18, 1)))
-
-DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), CTD_ANON_11, scope=DataSetRootType, documentation='DataSets of aligned CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 28, 1)))
-
-DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), CTD_ANON_8, scope=DataSetRootType, documentation='DataSets of CCS reads (typically in unaligned BAM format).', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 38, 1)))
-
-DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), CTD_ANON_12, scope=DataSetRootType, documentation='DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 71, 1)))
-
-DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), CTD_ANON_13, scope=DataSetRootType, documentation='DataSets of subreads in bax.h5 or bas.h5 format.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 83, 1)))
-
-DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), CTD_ANON_14, scope=DataSetRootType, documentation='DataSets of reference sequences. Replaces the reference.info.xml.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 93, 1)))
-
-DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), CTD_ANON_15, scope=DataSetRootType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 103, 1)))
-
-def _BuildAutomaton_2 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_2
- del _BuildAutomaton_2
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 212, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 213, 3))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 214, 3))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 215, 3))
- counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 216, 3))
- counters.add(cc_4)
- cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 217, 3))
- counters.add(cc_5)
- cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 218, 3))
- counters.add(cc_6)
- cc_7 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 219, 3))
- counters.add(cc_7)
- states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 212, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 213, 3))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 214, 3))
- st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 215, 3))
- st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_4, False))
- symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ContigSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 216, 3))
- st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_5, False))
- symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 217, 3))
- st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_5)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_6, False))
- symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 218, 3))
- st_6 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_6)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_7, False))
- symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 219, 3))
- st_7 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_7)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True) ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_2, True) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_4, True) ]))
- st_4._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_5, True) ]))
- st_5._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_6, True) ]))
- st_6._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_7, [
- fac.UpdateInstruction(cc_7, True) ]))
- st_7._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-DataSetRootType._Automaton = _BuildAutomaton_2()
-
-
-
-
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filter'), _ImportedBinding__pbbase.FilterType, scope=CTD_ANON_, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 233, 8)))
-
-def _BuildAutomaton_3 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_3
- del _BuildAutomaton_3
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filter')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 233, 8))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_._Automaton = _BuildAutomaton_3()
-
-
-
-
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), DataSetType, scope=CTD_ANON_2, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 81, 1)))
-
-def _BuildAutomaton_4 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_4
- del _BuildAutomaton_4
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 240, 8))
- counters.add(cc_0)
- states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSet')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 240, 8))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_2._Automaton = _BuildAutomaton_4()
-
-
-
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction'), pyxb.binding.datatypes.float, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 257, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction'), pyxb.binding.datatypes.float, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 258, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws'), pyxb.binding.datatypes.int, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 259, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ProdDist'), _ImportedBinding__pbbase.StatsDiscreteDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 260, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist'), _ImportedBinding__pbbase.StatsDiscreteDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 261, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 262, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 263, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 264, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 265, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 266, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 267, 8)))
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 268, 8)))
-
-def _BuildAutomaton_5 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_5
- del _BuildAutomaton_5
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 257, 8))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 258, 8))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 259, 8))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ProdDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 260, 8))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 261, 8))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 262, 8))
- st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_5)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 263, 8))
- st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_6)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 264, 8))
- st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_7)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 265, 8))
- st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_8)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 266, 8))
- st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_9)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 267, 8))
- st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_10)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 268, 8))
- st_11 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_11)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_5, [
- ]))
- st_4._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_6, [
- ]))
- st_5._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_7, [
- ]))
- st_6._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_8, [
- ]))
- st_7._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_9, [
- ]))
- st_8._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_10, [
- ]))
- st_9._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_11, [
- ]))
- st_10._set_transitionSet(transitions)
- transitions = []
- st_11._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_3._Automaton = _BuildAutomaton_5()
-
-
-
-
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filter'), _ImportedBinding__pbbase.FilterType, scope=CTD_ANON_4, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 313, 8)))
-
-def _BuildAutomaton_6 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_6
- del _BuildAutomaton_6
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filter')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 313, 8))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_4._Automaton = _BuildAutomaton_6()
-
-
-
-
-AlignmentSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Aligner'), pyxb.binding.datatypes.anyType, scope=AlignmentSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 121, 5)))
-
-def _BuildAutomaton_7 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_7
- del _BuildAutomaton_7
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 121, 5))
- counters.add(cc_1)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 187, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 188, 3))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Aligner')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 121, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, True) ]))
- st_3._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-AlignmentSetMetadataType._Automaton = _BuildAutomaton_7()
-
-
-
-
-BarcodeSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction'), pyxb.binding.datatypes.string, scope=BarcodeSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 142, 5)))
-
-def _BuildAutomaton_8 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_8
- del _BuildAutomaton_8
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- counters.add(cc_0)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 187, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 188, 3))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 142, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- st_3._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-BarcodeSetMetadataType._Automaton = _BuildAutomaton_8()
-
-
-
-
-ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), CTD_ANON_6, scope=ContigSetMetadataType, documentation='List of contigs in a ContigSet', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 48, 1)))
-
-ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Organism'), pyxb.binding.datatypes.string, scope=ContigSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 163, 5)))
-
-ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Ploidy'), pyxb.binding.datatypes.string, scope=ContigSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 164, 5)))
-
-def _BuildAutomaton_9 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_9
- del _BuildAutomaton_9
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 163, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 164, 5))
- counters.add(cc_2)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 187, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 188, 3))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Organism')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 163, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Ploidy')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 164, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Contigs')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 165, 5))
- st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_5)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- transitions.append(fac.Transition(st_5, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_4._set_transitionSet(transitions)
- transitions = []
- st_5._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-ContigSetMetadataType._Automaton = _BuildAutomaton_9()
-
-
-
-
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 192, 6)))
-
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 193, 6)))
-
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 194, 6)))
-
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ParentTool'), _ImportedBinding__pbbase.BaseEntityType, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 195, 6)))
-
-def _BuildAutomaton_10 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_10
- del _BuildAutomaton_10
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 192, 6))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 193, 6))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 194, 6))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 195, 6))
- counters.add(cc_3)
- states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 192, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 193, 6))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 194, 6))
- st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ParentTool')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 195, 6))
- st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_3._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_5._Automaton = _BuildAutomaton_10()
-
-
-
-
-ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections'), _ImportedBinding__pbmeta.CTD_ANON_, scope=ReadSetMetadataType, documentation='A set of acquisition definitions', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 20, 1)))
-
-ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats'), CTD_ANON_3, scope=ReadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 254, 5)))
-
-ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples'), _ImportedBinding__pbsample.CTD_ANON_3, scope=ReadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 134, 1)))
-
-def _BuildAutomaton_11 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_11
- del _BuildAutomaton_11
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 252, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 253, 5))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 254, 5))
- counters.add(cc_3)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 187, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 188, 3))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 252, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 253, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 254, 5))
- st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_5)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- transitions.append(fac.Transition(st_5, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_4._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_5._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-ReadSetMetadataType._Automaton = _BuildAutomaton_11()
-
-
-
-
-SubreadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength'), pyxb.binding.datatypes.int, scope=SubreadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 292, 5)))
-
-SubreadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality'), pyxb.binding.datatypes.float, scope=SubreadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 293, 5)))
-
-def _BuildAutomaton_12 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_12
- del _BuildAutomaton_12
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- counters.add(cc_0)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 187, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 188, 3))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 189, 3))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 292, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 293, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-SubreadSetMetadataType._Automaton = _BuildAutomaton_12()
-
-
-
-
-CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contig'), CTD_ANON_7, scope=CTD_ANON_6, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 56, 6)))
-
-def _BuildAutomaton_13 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_13
- del _BuildAutomaton_13
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Contig')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 56, 6))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- st_1._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_6._Automaton = _BuildAutomaton_13()
-
-
-
-
-def _BuildAutomaton_14 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_14
- del _BuildAutomaton_14
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_7._Automaton = _BuildAutomaton_14()
-
-
-
-
-DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources'), _ImportedBinding__pbbase.CTD_ANON_4, scope=DataSetType, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 256, 1)))
-
-DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filters'), CTD_ANON_, scope=DataSetType, documentation='The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5)))
-
-DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSets'), CTD_ANON_2, scope=DataSetType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5)))
-
-def _BuildAutomaton_15 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_15
- del _BuildAutomaton_15
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- st_3._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-DataSetType._Automaton = _BuildAutomaton_15()
-
-
-
-
-SubsetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers'), _ImportedBinding__pbbase.CTD_ANON_3, scope=SubsetType, documentation='Pointer list to UniqueIds in the system', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 222, 1)))
-
-SubsetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filters'), CTD_ANON_4, scope=SubsetType, documentation='The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 307, 5)))
-
-def _BuildAutomaton_16 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_16
- del _BuildAutomaton_16
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 307, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 317, 5))
- counters.add(cc_2)
- states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 307, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 317, 5))
- st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_2, True) ]))
- st_2._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-SubsetType._Automaton = _BuildAutomaton_16()
-
-
-
-
-def _BuildAutomaton_17 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_17
- del _BuildAutomaton_17
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- st_3._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_8._Automaton = _BuildAutomaton_17()
-
-
-
-
-AlignmentSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), AlignmentSetMetadataType, scope=AlignmentSetType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 133, 5)))
-
-def _BuildAutomaton_18 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_18
- del _BuildAutomaton_18
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 133, 5))
- counters.add(cc_3)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 133, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-AlignmentSetType._Automaton = _BuildAutomaton_18()
-
-
-
-
-BarcodeSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), BarcodeSetMetadataType, scope=BarcodeSetType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 154, 5)))
-
-def _BuildAutomaton_19 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_19
- del _BuildAutomaton_19
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 154, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-BarcodeSetType._Automaton = _BuildAutomaton_19()
-
-
-
-
-ContigSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), ContigSetMetadataType, scope=ContigSetType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 177, 5)))
-
-def _BuildAutomaton_20 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_20
- del _BuildAutomaton_20
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 177, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-ContigSetType._Automaton = _BuildAutomaton_20()
-
-
-
-
-ReadSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), ReadSetMetadataType, scope=ReadSetType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5)))
-
-def _BuildAutomaton_21 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_21
- del _BuildAutomaton_21
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5))
- counters.add(cc_3)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-ReadSetType._Automaton = _BuildAutomaton_21()
-
-
-
-
-def _BuildAutomaton_22 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_22
- del _BuildAutomaton_22
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 133, 5))
- counters.add(cc_3)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 133, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_9._Automaton = _BuildAutomaton_22()
-
-
-
-
-def _BuildAutomaton_23 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_23
- del _BuildAutomaton_23
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 154, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_10._Automaton = _BuildAutomaton_23()
-
-
-
-
-def _BuildAutomaton_24 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_24
- del _BuildAutomaton_24
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 133, 5))
- counters.add(cc_3)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 133, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_11._Automaton = _BuildAutomaton_24()
-
-
-
-
-def _BuildAutomaton_25 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_25
- del _BuildAutomaton_25
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 177, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_12._Automaton = _BuildAutomaton_25()
-
-
-
-
-def _BuildAutomaton_26 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_26
- del _BuildAutomaton_26
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5))
- counters.add(cc_3)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_13._Automaton = _BuildAutomaton_26()
-
-
-
-
-def _BuildAutomaton_27 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_27
- del _BuildAutomaton_27
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 177, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_14._Automaton = _BuildAutomaton_27()
-
-
-
-
-def _BuildAutomaton_28 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_28
- del _BuildAutomaton_28
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5))
- counters.add(cc_3)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-SubreadSetType._Automaton = _BuildAutomaton_28()
-
-
-
-
-def _BuildAutomaton_29 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_29
- del _BuildAutomaton_29
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5))
- counters.add(cc_3)
- states = []
- final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 226, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 227, 5))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 237, 5))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioDatasets.xsd', 283, 5))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- st_4._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_15._Automaton = _BuildAutomaton_29()
-
diff --git a/pbcore/io/dataset/_pbmeta.py b/pbcore/io/dataset/_pbmeta.py
old mode 100755
new mode 100644
index d3ff1db..e2133e6
--- a/pbcore/io/dataset/_pbmeta.py
+++ b/pbcore/io/dataset/_pbmeta.py
@@ -1,7 +1,7 @@
# ./_pbmeta.py
# -*- coding: utf-8 -*-
# PyXB bindings for NM:9efc6641c22b876b2d5ab7b8523f84c3396b188b
-# Generated 2015-10-20 16:54:17.025633 by PyXB version 1.2.4 using Python 2.7.6.final.0
+# Generated 2015-12-08 13:20:39.145540 by PyXB version 1.2.4 using Python 2.7.6.final.0
# Namespace http://pacificbiosciences.com/PacBioCollectionMetadata.xsd [xmlns:pbmeta]
from __future__ import unicode_literals
@@ -15,7 +15,7 @@ import sys
import pyxb.utils.six as _six
# Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:df41546a-7785-11e5-88f4-001a4acb6b14')
+_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:8749368c-9df1-11e5-86b0-001a4acb6b14')
# Version of PyXB used to generate the bindings
_PyXBVersion = '1.2.4'
@@ -86,7 +86,7 @@ class STD_ANON (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mi
"""An atomic simple type."""
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 387, 8)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 387, 8)
_Documentation = None
STD_ANON._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON, enum_prefix=None)
STD_ANON.Pulses = STD_ANON._CF_enumeration.addEnumeration(unicode_value='Pulses', tag='Pulses')
@@ -99,7 +99,7 @@ class STD_ANON_ (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_m
"""An atomic simple type."""
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 398, 8)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 398, 8)
_Documentation = None
STD_ANON_._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON_, enum_prefix=None)
STD_ANON_.Minimal = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Minimal', tag='Minimal')
@@ -113,17 +113,15 @@ class PapOutputFile (pyxb.binding.datatypes.string, pyxb.binding.basis.enumerati
"""Defines a list of available file output types from primary output that can be copied out to the CollectionPathUri. The types Pulse, Base, Fasta, and Fastq are for legacy use only."""
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'PapOutputFile')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 469, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 469, 1)
_Documentation = 'Defines a list of available file output types from primary output that can be copied out to the CollectionPathUri. The types Pulse, Base, Fasta, and Fastq are for legacy use only.'
PapOutputFile._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=PapOutputFile, enum_prefix=None)
-PapOutputFile.Movie = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Movie', tag='Movie')
+PapOutputFile.None_ = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='None', tag='None_')
PapOutputFile.Trace = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Trace', tag='Trace')
-PapOutputFile.Pulse = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Pulse', tag='Pulse')
-PapOutputFile.Base = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Base', tag='Base')
+PapOutputFile.Fasta = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Fasta', tag='Fasta')
PapOutputFile.Baz = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Baz', tag='Baz')
PapOutputFile.Bam = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Bam', tag='Bam')
-PapOutputFile.Fasta = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Fasta', tag='Fasta')
-PapOutputFile.Bam_ = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Bam', tag='Bam_')
+PapOutputFile.DarkFrame = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='DarkFrame', tag='DarkFrame')
PapOutputFile._InitializeFacetMap(PapOutputFile._CF_enumeration)
Namespace.addCategoryObject('typeBinding', 'PapOutputFile', PapOutputFile)
@@ -134,13 +132,13 @@ class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 14, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 14, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionMetadata uses Python identifier CollectionMetadata
- __CollectionMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), 'CollectionMetadata', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionMetadata', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 30, 1), )
+ __CollectionMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), 'CollectionMetadata', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionMetadata', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 30, 1), )
CollectionMetadata = property(__CollectionMetadata.value, __CollectionMetadata.set, None, 'Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ')
@@ -161,13 +159,13 @@ class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 24, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 24, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionMetadata uses Python identifier CollectionMetadata
- __CollectionMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), 'CollectionMetadata', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON__httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionMetadata', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 30, 1), )
+ __CollectionMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), 'CollectionMetadata', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON__httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionMetadata', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 30, 1), )
CollectionMetadata = property(__CollectionMetadata.value, __CollectionMetadata.set, None, 'Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ')
@@ -188,48 +186,48 @@ class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 150, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 150, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TimeStampedName uses Python identifier TimeStampedName
- __TimeStampedName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName'), 'TimeStampedName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdTimeStampedName', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 152, 4), )
+ __TimeStampedName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName'), 'TimeStampedName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdTimeStampedName', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 152, 4), )
TimeStampedName = property(__TimeStampedName.value, __TimeStampedName.set, None, 'A unique identifier for this run. Format is r[sid]_[iname]_[ts]. Where [id] is a system generated id and [iname] is the instrument name and [ts] is a timestamp YYMMDD Example: r000123_00117_100713 ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Name uses Python identifier Name
- __Name = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Name'), 'Name', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdName', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 157, 4), )
+ __Name = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Name'), 'Name', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdName', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 157, 4), )
Name = property(__Name.value, __Name.set, None, 'Assigned name for a run, which consists of multiple wells. There is no constraint on the uniqueness of this data. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CreatedBy uses Python identifier CreatedBy
- __CreatedBy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy'), 'CreatedBy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdCreatedBy', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 162, 4), )
+ __CreatedBy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy'), 'CreatedBy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdCreatedBy', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 162, 4), )
CreatedBy = property(__CreatedBy.value, __CreatedBy.set, None, 'Who created the run. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WhenCreated uses Python identifier WhenCreated
- __WhenCreated = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated'), 'WhenCreated', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenCreated', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 167, 4), )
+ __WhenCreated = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated'), 'WhenCreated', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenCreated', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 167, 4), )
WhenCreated = property(__WhenCreated.value, __WhenCreated.set, None, 'Date and time of when the overall run was created in the system. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}StartedBy uses Python identifier StartedBy
- __StartedBy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StartedBy'), 'StartedBy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdStartedBy', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 172, 4), )
+ __StartedBy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StartedBy'), 'StartedBy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdStartedBy', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 172, 4), )
StartedBy = property(__StartedBy.value, __StartedBy.set, None, 'Who started the run. Could be different from who created it. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WhenStarted uses Python identifier WhenStarted
- __WhenStarted = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), 'WhenStarted', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenStarted', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 177, 4), )
+ __WhenStarted = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), 'WhenStarted', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenStarted', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 177, 4), )
WhenStarted = property(__WhenStarted.value, __WhenStarted.set, None, 'Date and time of when the overall run was started. ')
@@ -255,27 +253,27 @@ class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 189, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 189, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WhenStarted uses Python identifier WhenStarted
- __WhenStarted = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), 'WhenStarted', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenStarted', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 191, 4), )
+ __WhenStarted = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), 'WhenStarted', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenStarted', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 191, 4), )
WhenStarted = property(__WhenStarted.value, __WhenStarted.set, None, 'Date and time of when this movie acquisition started. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}DurationInSec uses Python identifier DurationInSec
- __DurationInSec = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec'), 'DurationInSec', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdDurationInSec', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 196, 4), )
+ __DurationInSec = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec'), 'DurationInSec', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdDurationInSec', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 196, 4), )
DurationInSec = property(__DurationInSec.value, __DurationInSec.set, None, 'The actual length of the movie acquisition (in seconds), irrespective of the movie duration specified by an automation parameter. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Number uses Python identifier Number
- __Number = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Number'), 'Number', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdNumber', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 201, 4), )
+ __Number = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Number'), 'Number', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdNumber', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 201, 4), )
Number = property(__Number.value, __Number.set, None, "The number of this movie within the set (i.e., look). This is unique when combined with the 'SetNumber'. ")
@@ -298,48 +296,48 @@ class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 213, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 213, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TemplatePrepKitPastExpiration uses Python identifier TemplatePrepKitPastExpiration
- __TemplatePrepKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration'), 'TemplatePrepKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdTemplatePrepKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 215, 4), )
+ __TemplatePrepKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration'), 'TemplatePrepKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdTemplatePrepKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 215, 4), )
TemplatePrepKitPastExpiration = property(__TemplatePrepKitPastExpiration.value, __TemplatePrepKitPastExpiration.set, None, 'Number of days past expiration the template prep kit was (if at all). ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}BindingKitPastExpiration uses Python identifier BindingKitPastExpiration
- __BindingKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration'), 'BindingKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdBindingKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 220, 4), )
+ __BindingKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration'), 'BindingKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdBindingKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 220, 4), )
BindingKitPastExpiration = property(__BindingKitPastExpiration.value, __BindingKitPastExpiration.set, None, 'Number of days past expiration the binding kit was (if at all). ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CellPacPastExpiration uses Python identifier CellPacPastExpiration
- __CellPacPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration'), 'CellPacPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellPacPastExpiration', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 225, 4), )
+ __CellPacPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration'), 'CellPacPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellPacPastExpiration', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 225, 4), )
CellPacPastExpiration = property(__CellPacPastExpiration.value, __CellPacPastExpiration.set, None, 'Number of days past expiration the cell pac was (if at all). ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingKitPastExpiration uses Python identifier SequencingKitPastExpiration
- __SequencingKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration'), 'SequencingKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 235, 4), )
+ __SequencingKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration'), 'SequencingKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 235, 4), )
SequencingKitPastExpiration = property(__SequencingKitPastExpiration.value, __SequencingKitPastExpiration.set, None, 'Number of days past expiration the reagent kit was (if at all). ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingTube0PastExpiration uses Python identifier SequencingTube0PastExpiration
- __SequencingTube0PastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration'), 'SequencingTube0PastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingTube0PastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 240, 4), )
+ __SequencingTube0PastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration'), 'SequencingTube0PastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingTube0PastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 240, 4), )
SequencingTube0PastExpiration = property(__SequencingTube0PastExpiration.value, __SequencingTube0PastExpiration.set, None, 'Number of days past expiration the reagent tube 0 was (if at all). ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingTube1PastExpiration uses Python identifier SequencingTube1PastExpiration
- __SequencingTube1PastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration'), 'SequencingTube1PastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingTube1PastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 245, 4), )
+ __SequencingTube1PastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration'), 'SequencingTube1PastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingTube1PastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 245, 4), )
SequencingTube1PastExpiration = property(__SequencingTube1PastExpiration.value, __SequencingTube1PastExpiration.set, None, 'Number of days past expiration the reagent tube 1 was (if at all). ')
@@ -365,41 +363,41 @@ class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 323, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 323, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SampleTrace uses Python identifier SampleTrace
- __SampleTrace = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace'), 'SampleTrace', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleTrace', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 325, 4), )
+ __SampleTrace = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace'), 'SampleTrace', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleTrace', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 325, 4), )
SampleTrace = property(__SampleTrace.value, __SampleTrace.set, None, 'Tag to indicate that the trace file will be sampled. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}AutomationName uses Python identifier AutomationName
- __AutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), 'AutomationName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 344, 4), )
+ __AutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), 'AutomationName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 344, 4), )
AutomationName = property(__AutomationName.value, __AutomationName.set, None, 'Name of primary analysis protocol. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ConfigFileName uses Python identifier ConfigFileName
- __ConfigFileName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName'), 'ConfigFileName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdConfigFileName', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 349, 4), )
+ __ConfigFileName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName'), 'ConfigFileName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdConfigFileName', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 349, 4), )
ConfigFileName = property(__ConfigFileName.value, __ConfigFileName.set, None, 'Name of primary analysis config file. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingCondition uses Python identifier SequencingCondition
- __SequencingCondition = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition'), 'SequencingCondition', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingCondition', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 354, 4), )
+ __SequencingCondition = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition'), 'SequencingCondition', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingCondition', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 354, 4), )
SequencingCondition = property(__SequencingCondition.value, __SequencingCondition.set, None, 'A sequencing condition tag to be used by primary analysis, e.g., to select basecaller calibration or training parameters. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}OutputOptions uses Python identifier OutputOptions
- __OutputOptions = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions'), 'OutputOptions', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdOutputOptions', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 359, 4), )
+ __OutputOptions = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions'), 'OutputOptions', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdOutputOptions', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 359, 4), )
OutputOptions = property(__OutputOptions.value, __OutputOptions.set, None, None)
@@ -424,20 +422,20 @@ class CTD_ANON_6 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 329, 5)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 329, 5)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TraceSamplingFactor uses Python identifier TraceSamplingFactor
- __TraceSamplingFactor = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor'), 'TraceSamplingFactor', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdTraceSamplingFactor', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 331, 7), )
+ __TraceSamplingFactor = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor'), 'TraceSamplingFactor', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdTraceSamplingFactor', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 331, 7), )
TraceSamplingFactor = property(__TraceSamplingFactor.value, __TraceSamplingFactor.set, None, 'Percentage of traces to sample. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}FullPulseFile uses Python identifier FullPulseFile
- __FullPulseFile = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile'), 'FullPulseFile', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdFullPulseFile', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 336, 7), )
+ __FullPulseFile = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile'), 'FullPulseFile', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdFullPulseFile', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 336, 7), )
FullPulseFile = property(__FullPulseFile.value, __FullPulseFile.set, None, 'Whether full or sampled pulse file is transferred if requested. ')
@@ -459,41 +457,41 @@ class CTD_ANON_7 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 360, 5)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 360, 5)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ResultsFolder uses Python identifier ResultsFolder
- __ResultsFolder = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder'), 'ResultsFolder', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdResultsFolder', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 362, 7), )
+ __ResultsFolder = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder'), 'ResultsFolder', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdResultsFolder', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 362, 7), )
ResultsFolder = property(__ResultsFolder.value, __ResultsFolder.set, None, "NOTE: not for customers. A sub-folder under the CollectionPath created by Primary Analysis. This is a field that will be updated by the primary analysis pipeline. The default (as created by homer) should be set to 'Reports_Sms' for now. Consumers of the data should be aware that they will find collection metadata (and trace files if acquisition is so-configured) at the CollectionPathUri, and all primary ana [...]
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionPathUri uses Python identifier CollectionPathUri
- __CollectionPathUri = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri'), 'CollectionPathUri', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionPathUri', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 367, 7), )
+ __CollectionPathUri = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri'), 'CollectionPathUri', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionPathUri', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 367, 7), )
CollectionPathUri = property(__CollectionPathUri.value, __CollectionPathUri.set, None, 'User-specified location of where the results should be copied after an analysis has been completed. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CopyFiles uses Python identifier CopyFiles
- __CopyFiles = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles'), 'CopyFiles', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdCopyFiles', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 372, 7), )
+ __CopyFiles = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles'), 'CopyFiles', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdCopyFiles', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 372, 7), )
CopyFiles = property(__CopyFiles.value, __CopyFiles.set, None, None)
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Readout uses Python identifier Readout
- __Readout = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Readout'), 'Readout', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdReadout', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 383, 7), )
+ __Readout = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Readout'), 'Readout', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdReadout', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 383, 7), )
Readout = property(__Readout.value, __Readout.set, None, 'BazIO Readout option; valid values are Bases (default) and Pulses')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}MetricsVerbosity uses Python identifier MetricsVerbosity
- __MetricsVerbosity = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity'), 'MetricsVerbosity', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdMetricsVerbosity', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 394, 7), )
+ __MetricsVerbosity = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity'), 'MetricsVerbosity', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdMetricsVerbosity', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 394, 7), )
MetricsVerbosity = property(__MetricsVerbosity.value, __MetricsVerbosity.set, None, 'BazIO MetricsVerbosity option; valid values are Minimal (default), High, and None')
@@ -518,13 +516,13 @@ class CTD_ANON_8 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 373, 8)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 373, 8)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionFileCopy uses Python identifier CollectionFileCopy
- __CollectionFileCopy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy'), 'CollectionFileCopy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_8_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionFileCopy', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 375, 10), )
+ __CollectionFileCopy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy'), 'CollectionFileCopy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_8_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionFileCopy', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 375, 10), )
CollectionFileCopy = property(__CollectionFileCopy.value, __CollectionFileCopy.set, None, 'Defines the set of files to be copied to the CollectionPathUri. 1 or more. ')
@@ -545,27 +543,27 @@ class CTD_ANON_9 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 417, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 417, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}AutomationName uses Python identifier AutomationName
- __AutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), 'AutomationName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 419, 4), )
+ __AutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), 'AutomationName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 419, 4), )
AutomationName = property(__AutomationName.value, __AutomationName.set, None, 'The secondary analysis protocol name specified in the sample sheet. Ignored by secondary. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}AutomationParameters uses Python identifier AutomationParameters
- __AutomationParameters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), 'AutomationParameters', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationParameters', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 424, 4), )
+ __AutomationParameters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), 'AutomationParameters', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationParameters', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 424, 4), )
AutomationParameters = property(__AutomationParameters.value, __AutomationParameters.set, None, 'The parameters for secondary analysis specified in the sample sheet. Ignored by secondary. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CellCountInJob uses Python identifier CellCountInJob
- __CellCountInJob = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob'), 'CellCountInJob', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellCountInJob', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 438, 4), )
+ __CellCountInJob = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob'), 'CellCountInJob', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellCountInJob', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 438, 4), )
CellCountInJob = property(__CellCountInJob.value, __CellCountInJob.set, None, "The number of cells in this secondary analysis job, identified by the secondary analysis parameter 'JobName'. Supports automated secondary analysis. ")
@@ -588,13 +586,13 @@ class CTD_ANON_10 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 428, 5)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 428, 5)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}AutomationParameter uses Python identifier AutomationParameter
- __AutomationParameter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), 'AutomationParameter', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_10_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationParameter', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 430, 7), )
+ __AutomationParameter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), 'AutomationParameter', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_10_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationParameter', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 430, 7), )
AutomationParameter = property(__AutomationParameter.value, __AutomationParameter.set, None, 'One or more secondary analysis parameters, such as JobName, Workflow, etc..')
@@ -615,23 +613,23 @@ class CTD_ANON_11 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_SIMPLE
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 456, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 456, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.string
# Attribute key uses Python identifier key
__key = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'key'), 'key', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_11_key', pyxb.binding.datatypes.string, required=True)
- __key._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 459, 5)
- __key._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 459, 5)
+ __key._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 459, 5)
+ __key._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 459, 5)
key = property(__key.value, __key.set, None, 'Key (attribute) and Value (element content). ')
# Attribute label uses Python identifier label
__label = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'label'), 'label', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_11_label', pyxb.binding.datatypes.string)
- __label._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 464, 5)
- __label._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 464, 5)
+ __label._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 464, 5)
+ __label._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 464, 5)
label = property(__label.value, __label.set, None, None)
@@ -652,7 +650,7 @@ class CTD_ANON_12 (_ImportedBinding__pbbase.BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 257, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 257, 2)
_ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.BaseEntityType
@@ -660,70 +658,70 @@ class CTD_ANON_12 (_ImportedBinding__pbbase.BaseEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WellName uses Python identifier WellName
- __WellName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WellName'), 'WellName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdWellName', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 261, 6), )
+ __WellName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WellName'), 'WellName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdWellName', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 261, 6), )
WellName = property(__WellName.value, __WellName.set, None, 'Identifies which well this sample came from (e.g., coordinate on a plate). ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Concentration uses Python identifier Concentration
- __Concentration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdConcentration', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 266, 6), )
+ __Concentration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdConcentration', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 266, 6), )
Concentration = property(__Concentration.value, __Concentration.set, None, 'Sample input concentration. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}InsertSize uses Python identifier InsertSize
- __InsertSize = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertSize'), 'InsertSize', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdInsertSize', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 271, 6), )
+ __InsertSize = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertSize'), 'InsertSize', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdInsertSize', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 271, 6), )
InsertSize = property(__InsertSize.value, __InsertSize.set, None, 'Length of the sheared template, e.g. 500, 2000, 30000')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SampleReuseEnabled uses Python identifier SampleReuseEnabled
- __SampleReuseEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled'), 'SampleReuseEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleReuseEnabled', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 276, 6), )
+ __SampleReuseEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled'), 'SampleReuseEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleReuseEnabled', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 276, 6), )
SampleReuseEnabled = property(__SampleReuseEnabled.value, __SampleReuseEnabled.set, None, 'Whether or not complex reuse is enabled for this well. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}StageHotstartEnabled uses Python identifier StageHotstartEnabled
- __StageHotstartEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled'), 'StageHotstartEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdStageHotstartEnabled', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 281, 6), )
+ __StageHotstartEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled'), 'StageHotstartEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdStageHotstartEnabled', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 281, 6), )
StageHotstartEnabled = property(__StageHotstartEnabled.value, __StageHotstartEnabled.set, None, 'Whether or not hotstart at the stage is enabled for this well. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SizeSelectionEnabled uses Python identifier SizeSelectionEnabled
- __SizeSelectionEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled'), 'SizeSelectionEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdSizeSelectionEnabled', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 286, 6), )
+ __SizeSelectionEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled'), 'SizeSelectionEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdSizeSelectionEnabled', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 286, 6), )
SizeSelectionEnabled = property(__SizeSelectionEnabled.value, __SizeSelectionEnabled.set, None, 'Whether or not size selection is enabled for this well. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}UseCount uses Python identifier UseCount
- __UseCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'UseCount'), 'UseCount', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdUseCount', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 291, 6), )
+ __UseCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'UseCount'), 'UseCount', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdUseCount', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 291, 6), )
UseCount = property(__UseCount.value, __UseCount.set, None, 'Count of usages for this batch of complex. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}DNAControlComplex uses Python identifier DNAControlComplex
- __DNAControlComplex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex'), 'DNAControlComplex', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdDNAControlComplex', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 296, 6), )
+ __DNAControlComplex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex'), 'DNAControlComplex', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdDNAControlComplex', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 296, 6), )
DNAControlComplex = property(__DNAControlComplex.value, __DNAControlComplex.set, None, 'Indicating what kind (if any) control was used. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SampleBarcodeInfo uses Python identifier SampleBarcodeInfo
- __SampleBarcodeInfo = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleBarcodeInfo'), 'SampleBarcodeInfo', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleBarcodeInfo', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 301, 6), )
+ __SampleBarcodeInfo = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleBarcodeInfo'), 'SampleBarcodeInfo', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleBarcodeInfo', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 301, 6), )
SampleBarcodeInfo = property(__SampleBarcodeInfo.value, __SampleBarcodeInfo.set, None, 'When utilizing DNA barcoding, store the list of smaple barcodes in this element.')
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamplePointers uses Python identifier BioSamplePointers
- __BioSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamplePointers'), 'BioSamplePointers', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 100, 1), )
+ __BioSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamplePointers'), 'BioSamplePointers', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 100, 1), )
BioSamplePointers = property(__BioSamplePointers.value, __BioSamplePointers.set, None, 'Back references to other BarcodedSampleType object UniqueIds which utilize this sample')
@@ -769,7 +767,7 @@ class CTD_ANON_13 (_ImportedBinding__pbbase.StrictEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 34, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 34, 2)
_ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.StrictEntityType
@@ -777,119 +775,119 @@ class CTD_ANON_13 (_ImportedBinding__pbbase.StrictEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}InstCtrlVer uses Python identifier InstCtrlVer
- __InstCtrlVer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer'), 'InstCtrlVer', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdInstCtrlVer', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 38, 6), )
+ __InstCtrlVer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer'), 'InstCtrlVer', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdInstCtrlVer', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 38, 6), )
InstCtrlVer = property(__InstCtrlVer.value, __InstCtrlVer.set, None, 'Instrument control software version. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SigProcVer uses Python identifier SigProcVer
- __SigProcVer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer'), 'SigProcVer', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdSigProcVer', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 43, 6), )
+ __SigProcVer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer'), 'SigProcVer', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdSigProcVer', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 43, 6), )
SigProcVer = property(__SigProcVer.value, __SigProcVer.set, None, 'Signal processing software version. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Automation uses Python identifier Automation
- __Automation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automation'), 'Automation', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomation', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 65, 6), )
+ __Automation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automation'), 'Automation', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomation', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 65, 6), )
Automation = property(__Automation.value, __Automation.set, None, 'Defines the collection workflow (e.g., robotic movement, movie acquisition) for a particular cell. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionNumber uses Python identifier CollectionNumber
- __CollectionNumber = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber'), 'CollectionNumber', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionNumber', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 70, 6), )
+ __CollectionNumber = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber'), 'CollectionNumber', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionNumber', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 70, 6), )
CollectionNumber = property(__CollectionNumber.value, __CollectionNumber.set, None, 'Collection number for this plate well. Sample from one plate well or tube can be distributed to more than one cell. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CellIndex uses Python identifier CellIndex
- __CellIndex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellIndex'), 'CellIndex', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellIndex', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 75, 6), )
+ __CellIndex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellIndex'), 'CellIndex', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellIndex', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 75, 6), )
CellIndex = property(__CellIndex.value, __CellIndex.set, None, 'The zero-based index of this particular cell within the cell tray. Likely to be in the range of [0-3]')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SetNumber uses Python identifier SetNumber
- __SetNumber = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SetNumber'), 'SetNumber', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdSetNumber', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 80, 6), )
+ __SetNumber = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SetNumber'), 'SetNumber', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdSetNumber', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 80, 6), )
SetNumber = property(__SetNumber.value, __SetNumber.set, None, 'Formerly known as the look number. 1 - N. Defaults to 1. 0 if the look is unknown. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CellPac uses Python identifier CellPac
- __CellPac = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellPac'), 'CellPac', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellPac', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 85, 6), )
+ __CellPac = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellPac'), 'CellPac', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellPac', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 85, 6), )
CellPac = property(__CellPac.value, __CellPac.set, None, 'The SMRT cell packaging supply information. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TemplatePrepKit uses Python identifier TemplatePrepKit
- __TemplatePrepKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), 'TemplatePrepKit', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdTemplatePrepKit', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 90, 6), )
+ __TemplatePrepKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), 'TemplatePrepKit', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdTemplatePrepKit', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 90, 6), )
TemplatePrepKit = property(__TemplatePrepKit.value, __TemplatePrepKit.set, None, 'Defines the template (sample) prep kit used for this experiment. Can be used to get back to the primary and adapter used. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}BindingKit uses Python identifier BindingKit
- __BindingKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), 'BindingKit', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdBindingKit', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 95, 6), )
+ __BindingKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), 'BindingKit', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdBindingKit', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 95, 6), )
BindingKit = property(__BindingKit.value, __BindingKit.set, None, 'The binding kit supply information. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingKitPlate uses Python identifier SequencingKitPlate
- __SequencingKitPlate = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate'), 'SequencingKitPlate', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingKitPlate', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 100, 6), )
+ __SequencingKitPlate = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate'), 'SequencingKitPlate', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingKitPlate', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 100, 6), )
SequencingKitPlate = property(__SequencingKitPlate.value, __SequencingKitPlate.set, None, 'The sequencing kit supply information. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}RunDetails uses Python identifier RunDetails
- __RunDetails = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), 'RunDetails', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdRunDetails', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 146, 1), )
+ __RunDetails = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), 'RunDetails', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdRunDetails', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 146, 1), )
RunDetails = property(__RunDetails.value, __RunDetails.set, None, 'Information related to an instrument run. A run can contain multiple chips, wells, and movies. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Movie uses Python identifier Movie
- __Movie = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Movie'), 'Movie', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdMovie', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 185, 1), )
+ __Movie = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Movie'), 'Movie', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdMovie', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 185, 1), )
Movie = property(__Movie.value, __Movie.set, None, 'A movie corresponds to one acquisition for a chip, one set (look) and one strobe. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ExpirationData uses Python identifier ExpirationData
- __ExpirationData = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), 'ExpirationData', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdExpirationData', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 209, 1), )
+ __ExpirationData = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), 'ExpirationData', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdExpirationData', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 209, 1), )
ExpirationData = property(__ExpirationData.value, __ExpirationData.set, None, 'Container for the expired consumable data. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WellSample uses Python identifier WellSample
- __WellSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), 'WellSample', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdWellSample', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 253, 1), )
+ __WellSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), 'WellSample', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdWellSample', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 253, 1), )
WellSample = property(__WellSample.value, __WellSample.set, None, 'Container for the sample related data. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Primary uses Python identifier Primary
- __Primary = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Primary'), 'Primary', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdPrimary', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 319, 1), )
+ __Primary = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Primary'), 'Primary', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdPrimary', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 319, 1), )
Primary = property(__Primary.value, __Primary.set, None, 'Container for the primary analysis related data. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Secondary uses Python identifier Secondary
- __Secondary = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), 'Secondary', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdSecondary', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 413, 1), )
+ __Secondary = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), 'Secondary', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdSecondary', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 413, 1), )
Secondary = property(__Secondary.value, __Secondary.set, None, 'Container for the primary analysis related data. ')
# Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}UserDefinedFields uses Python identifier UserDefinedFields
- __UserDefinedFields = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), 'UserDefinedFields', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdUserDefinedFields', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 447, 1), )
+ __UserDefinedFields = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), 'UserDefinedFields', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdUserDefinedFields', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 447, 1), )
UserDefinedFields = property(__UserDefinedFields.value, __UserDefinedFields.set, None, 'A set of key-value pairs specified by a user via the run input mechanism. Note that uniqueness of keys is not enforced here and so may contain duplicate keys. ')
@@ -919,32 +917,32 @@ class CTD_ANON_13 (_ImportedBinding__pbbase.StrictEntityType):
# Attribute Context uses Python identifier Context
__Context = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Context'), 'Context', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_Context', pyxb.binding.datatypes.string)
- __Context._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 126, 5)
- __Context._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 126, 5)
+ __Context._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 126, 5)
+ __Context._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 126, 5)
Context = property(__Context.value, __Context.set, None, 'Replace with TimeStampedName')
# Attribute Status uses Python identifier Status
__Status = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Status'), 'Status', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_Status', _ImportedBinding__pbbase.SupportedAcquisitionStates)
- __Status._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 131, 5)
- __Status._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 131, 5)
+ __Status._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 131, 5)
+ __Status._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 131, 5)
Status = property(__Status.value, __Status.set, None, None)
# Attribute InstrumentId uses Python identifier InstrumentId
__InstrumentId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InstrumentId'), 'InstrumentId', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_InstrumentId', pyxb.binding.datatypes.string)
- __InstrumentId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 132, 5)
- __InstrumentId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 132, 5)
+ __InstrumentId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 132, 5)
+ __InstrumentId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 132, 5)
InstrumentId = property(__InstrumentId.value, __InstrumentId.set, None, 'World unique id assigned by PacBio. ')
# Attribute InstrumentName uses Python identifier InstrumentName
__InstrumentName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InstrumentName'), 'InstrumentName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_InstrumentName', pyxb.binding.datatypes.string)
- __InstrumentName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 137, 5)
- __InstrumentName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 137, 5)
+ __InstrumentName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 137, 5)
+ __InstrumentName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 137, 5)
InstrumentName = property(__InstrumentName.value, __InstrumentName.set, None, 'Friendly name assigned by customer')
@@ -976,42 +974,42 @@ class CTD_ANON_13 (_ImportedBinding__pbbase.StrictEntityType):
-PacBioCollectionMetadata = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioCollectionMetadata'), CTD_ANON, documentation='Root element of a standalone CollectionMetadata file.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 10, 1))
+PacBioCollectionMetadata = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioCollectionMetadata'), CTD_ANON, documentation='Root element of a standalone CollectionMetadata file.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 10, 1))
Namespace.addCategoryObject('elementBinding', PacBioCollectionMetadata.name().localName(), PacBioCollectionMetadata)
-Collections = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Collections'), CTD_ANON_, documentation='A set of acquisition definitions', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 20, 1))
+Collections = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Collections'), CTD_ANON_, documentation='A set of acquisition definitions', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 20, 1))
Namespace.addCategoryObject('elementBinding', Collections.name().localName(), Collections)
-RunDetails = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), CTD_ANON_2, documentation='Information related to an instrument run. A run can contain multiple chips, wells, and movies. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 146, 1))
+RunDetails = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), CTD_ANON_2, documentation='Information related to an instrument run. A run can contain multiple chips, wells, and movies. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 146, 1))
Namespace.addCategoryObject('elementBinding', RunDetails.name().localName(), RunDetails)
-Movie = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Movie'), CTD_ANON_3, documentation='A movie corresponds to one acquisition for a chip, one set (look) and one strobe. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 185, 1))
+Movie = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Movie'), CTD_ANON_3, documentation='A movie corresponds to one acquisition for a chip, one set (look) and one strobe. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 185, 1))
Namespace.addCategoryObject('elementBinding', Movie.name().localName(), Movie)
-ExpirationData = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), CTD_ANON_4, documentation='Container for the expired consumable data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 209, 1))
+ExpirationData = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), CTD_ANON_4, documentation='Container for the expired consumable data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 209, 1))
Namespace.addCategoryObject('elementBinding', ExpirationData.name().localName(), ExpirationData)
-Primary = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Primary'), CTD_ANON_5, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 319, 1))
+Primary = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Primary'), CTD_ANON_5, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 319, 1))
Namespace.addCategoryObject('elementBinding', Primary.name().localName(), Primary)
-Secondary = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), CTD_ANON_9, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 413, 1))
+Secondary = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), CTD_ANON_9, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 413, 1))
Namespace.addCategoryObject('elementBinding', Secondary.name().localName(), Secondary)
-UserDefinedFields = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), _ImportedBinding__pbbase.UserDefinedFieldsType, documentation='A set of key-value pairs specified by a user via the run input mechanism. Note that uniqueness of keys is not enforced here and so may contain duplicate keys. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 447, 1))
+UserDefinedFields = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), _ImportedBinding__pbbase.UserDefinedFieldsType, documentation='A set of key-value pairs specified by a user via the run input mechanism. Note that uniqueness of keys is not enforced here and so may contain duplicate keys. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 447, 1))
Namespace.addCategoryObject('elementBinding', UserDefinedFields.name().localName(), UserDefinedFields)
-KeyValue = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValue'), CTD_ANON_11, documentation='One custom, possibly non-unique, key-value pair. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 452, 1))
+KeyValue = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValue'), CTD_ANON_11, documentation='One custom, possibly non-unique, key-value pair. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 452, 1))
Namespace.addCategoryObject('elementBinding', KeyValue.name().localName(), KeyValue)
-WellSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), CTD_ANON_12, documentation='Container for the sample related data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 253, 1))
+WellSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), CTD_ANON_12, documentation='Container for the sample related data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 253, 1))
Namespace.addCategoryObject('elementBinding', WellSample.name().localName(), WellSample)
-CollectionMetadata = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_13, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils.utility.Location(' [...]
+CollectionMetadata = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_13, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils.utility.Location(' [...]
Namespace.addCategoryObject('elementBinding', CollectionMetadata.name().localName(), CollectionMetadata)
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_13, scope=CTD_ANON, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils.ut [...]
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_13, scope=CTD_ANON, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils.ut [...]
def _BuildAutomaton ():
# Remove this helper function from the namespace after it is invoked
@@ -1022,7 +1020,7 @@ def _BuildAutomaton ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 16, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 16, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -1033,7 +1031,7 @@ CTD_ANON._Automaton = _BuildAutomaton()
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_13, scope=CTD_ANON_, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils. [...]
+CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_13, scope=CTD_ANON_, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils. [...]
def _BuildAutomaton_ ():
# Remove this helper function from the namespace after it is invoked
@@ -1044,7 +1042,7 @@ def _BuildAutomaton_ ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 26, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 26, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -1057,17 +1055,17 @@ CTD_ANON_._Automaton = _BuildAutomaton_()
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName'), pyxb.binding.datatypes.string, scope=CTD_ANON_2, documentation='A unique identifier for this run. Format is r[sid]_[iname]_[ts]. Where [id] is a system generated id and [iname] is the instrument name and [ts] is a timestamp YYMMDD Example: r000123_00117_100713 ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 152, 4)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName'), pyxb.binding.datatypes.string, scope=CTD_ANON_2, documentation='A unique identifier for this run. Format is r[sid]_[iname]_[ts]. Where [id] is a system generated id and [iname] is the instrument name and [ts] is a timestamp YYMMDD Example: r000123_00117_100713 ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 152, 4)))
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Name'), pyxb.binding.datatypes.string, scope=CTD_ANON_2, documentation='Assigned name for a run, which consists of multiple wells. There is no constraint on the uniqueness of this data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 157, 4)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Name'), pyxb.binding.datatypes.string, scope=CTD_ANON_2, documentation='Assigned name for a run, which consists of multiple wells. There is no constraint on the uniqueness of this data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 157, 4)))
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy'), pyxb.binding.datatypes.string, scope=CTD_ANON_2, documentation='Who created the run. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 162, 4)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy'), pyxb.binding.datatypes.string, scope=CTD_ANON_2, documentation='Who created the run. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 162, 4)))
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_2, documentation='Date and time of when the overall run was created in the system. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 167, 4)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_2, documentation='Date and time of when the overall run was created in the system. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 167, 4)))
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StartedBy'), pyxb.binding.datatypes.string, scope=CTD_ANON_2, documentation='Who started the run. Could be different from who created it. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 172, 4)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StartedBy'), pyxb.binding.datatypes.string, scope=CTD_ANON_2, documentation='Who started the run. Could be different from who created it. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 172, 4)))
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_2, documentation='Date and time of when the overall run was started. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 177, 4)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_2, documentation='Date and time of when the overall run was started. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 177, 4)))
def _BuildAutomaton_2 ():
# Remove this helper function from the namespace after it is invoked
@@ -1076,44 +1074,44 @@ def _BuildAutomaton_2 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 157, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 157, 4))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 162, 4))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 162, 4))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 167, 4))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 167, 4))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 172, 4))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 172, 4))
counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 177, 4))
+ cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 177, 4))
counters.add(cc_4)
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 152, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 152, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Name')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 157, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Name')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 157, 4))
st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 162, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 162, 4))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 167, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 167, 4))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StartedBy')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 172, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StartedBy')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 172, 4))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_4, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 177, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 177, 4))
st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
transitions = []
@@ -1174,11 +1172,11 @@ CTD_ANON_2._Automaton = _BuildAutomaton_2()
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_3, documentation='Date and time of when this movie acquisition started. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 191, 4)))
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_3, documentation='Date and time of when this movie acquisition started. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 191, 4)))
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec'), pyxb.binding.datatypes.int, scope=CTD_ANON_3, documentation='The actual length of the movie acquisition (in seconds), irrespective of the movie duration specified by an automation parameter. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 196, 4), unicode_default='0'))
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec'), pyxb.binding.datatypes.int, scope=CTD_ANON_3, documentation='The actual length of the movie acquisition (in seconds), irrespective of the movie duration specified by an automation parameter. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 196, 4), unicode_default='0'))
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Number'), pyxb.binding.datatypes.int, scope=CTD_ANON_3, documentation="The number of this movie within the set (i.e., look). This is unique when combined with the 'SetNumber'. ", location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 201, 4), unicode_default='0'))
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Number'), pyxb.binding.datatypes.int, scope=CTD_ANON_3, documentation="The number of this movie within the set (i.e., look). This is unique when combined with the 'SetNumber'. ", location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 201, 4), unicode_default='0'))
def _BuildAutomaton_3 ():
# Remove this helper function from the namespace after it is invoked
@@ -1189,15 +1187,15 @@ def _BuildAutomaton_3 ():
counters = set()
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 191, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 191, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 196, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 196, 4))
st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Number')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 201, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Number')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 201, 4))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
@@ -1216,17 +1214,17 @@ CTD_ANON_3._Automaton = _BuildAutomaton_3()
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the template prep kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 215, 4)))
+CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the template prep kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 215, 4)))
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the binding kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 220, 4)))
+CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the binding kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 220, 4)))
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the cell pac was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 225, 4)))
+CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the cell pac was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 225, 4)))
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the reagent kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 235, 4)))
+CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the reagent kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 235, 4)))
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the reagent tube 0 was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 240, 4)))
+CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the reagent tube 0 was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 240, 4)))
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the reagent tube 1 was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 245, 4)))
+CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='Number of days past expiration the reagent tube 1 was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 245, 4)))
def _BuildAutomaton_4 ():
# Remove this helper function from the namespace after it is invoked
@@ -1237,31 +1235,31 @@ def _BuildAutomaton_4 ():
counters = set()
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 215, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 215, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 220, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 220, 4))
st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 225, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 225, 4))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 230, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 230, 4))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 235, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 235, 4))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 240, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 240, 4))
st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 245, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 245, 4))
st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_6)
transitions = []
@@ -1296,15 +1294,15 @@ CTD_ANON_4._Automaton = _BuildAutomaton_4()
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace'), CTD_ANON_6, scope=CTD_ANON_5, documentation='Tag to indicate that the trace file will be sampled. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 325, 4)))
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace'), CTD_ANON_6, scope=CTD_ANON_5, documentation='Tag to indicate that the trace file will be sampled. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 325, 4)))
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), pyxb.binding.datatypes.string, scope=CTD_ANON_5, documentation='Name of primary analysis protocol. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 344, 4)))
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), pyxb.binding.datatypes.string, scope=CTD_ANON_5, documentation='Name of primary analysis protocol. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 344, 4)))
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName'), pyxb.binding.datatypes.string, scope=CTD_ANON_5, documentation='Name of primary analysis config file. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 349, 4)))
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName'), pyxb.binding.datatypes.string, scope=CTD_ANON_5, documentation='Name of primary analysis config file. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 349, 4)))
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition'), pyxb.binding.datatypes.string, scope=CTD_ANON_5, documentation='A sequencing condition tag to be used by primary analysis, e.g., to select basecaller calibration or training parameters. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 354, 4)))
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition'), pyxb.binding.datatypes.string, scope=CTD_ANON_5, documentation='A sequencing condition tag to be used by primary analysis, e.g., to select basecaller calibration or training parameters. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 354, 4)))
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions'), CTD_ANON_7, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 359, 4)))
+CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions'), CTD_ANON_7, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 359, 4)))
def _BuildAutomaton_5 ():
# Remove this helper function from the namespace after it is invoked
@@ -1313,27 +1311,27 @@ def _BuildAutomaton_5 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 325, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 325, 4))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 325, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 325, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationName')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 344, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationName')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 344, 4))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 349, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 349, 4))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 354, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 354, 4))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 359, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 359, 4))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
transitions = []
@@ -1362,9 +1360,9 @@ CTD_ANON_5._Automaton = _BuildAutomaton_5()
-CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor'), pyxb.binding.datatypes.float, scope=CTD_ANON_6, documentation='Percentage of traces to sample. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 331, 7)))
+CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor'), pyxb.binding.datatypes.float, scope=CTD_ANON_6, documentation='Percentage of traces to sample. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 331, 7)))
-CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_6, documentation='Whether full or sampled pulse file is transferred if requested. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 336, 7)))
+CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_6, documentation='Whether full or sampled pulse file is transferred if requested. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 336, 7)))
def _BuildAutomaton_6 ():
# Remove this helper function from the namespace after it is invoked
@@ -1375,11 +1373,11 @@ def _BuildAutomaton_6 ():
counters = set()
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 331, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 331, 7))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 336, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 336, 7))
st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
@@ -1394,15 +1392,15 @@ CTD_ANON_6._Automaton = _BuildAutomaton_6()
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder'), pyxb.binding.datatypes.string, scope=CTD_ANON_7, documentation="NOTE: not for customers. A sub-folder under the CollectionPath created by Primary Analysis. This is a field that will be updated by the primary analysis pipeline. The default (as created by homer) should be set to 'Reports_Sms' for now. Consumers of the data should be aware that they will find collection metadata (and [...]
+CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder'), pyxb.binding.datatypes.string, scope=CTD_ANON_7, documentation="NOTE: not for customers. A sub-folder under the CollectionPath created by Primary Analysis. This is a field that will be updated by the primary analysis pipeline. The default (as created by homer) should be set to 'Reports_Sms' for now. Consumers of the data should be aware that they will find collection metadata (and [...]
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri'), pyxb.binding.datatypes.anyURI, scope=CTD_ANON_7, documentation='User-specified location of where the results should be copied after an analysis has been completed. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 367, 7)))
+CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri'), pyxb.binding.datatypes.anyURI, scope=CTD_ANON_7, documentation='User-specified location of where the results should be copied after an analysis has been completed. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 367, 7)))
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles'), CTD_ANON_8, scope=CTD_ANON_7, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 372, 7)))
+CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles'), CTD_ANON_8, scope=CTD_ANON_7, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 372, 7)))
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Readout'), STD_ANON, scope=CTD_ANON_7, documentation='BazIO Readout option; valid values are Bases (default) and Pulses', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 383, 7), unicode_default='Bases'))
+CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Readout'), STD_ANON, scope=CTD_ANON_7, documentation='BazIO Readout option; valid values are Bases (default) and Pulses', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 383, 7), unicode_default='Bases'))
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity'), STD_ANON_, scope=CTD_ANON_7, documentation='BazIO MetricsVerbosity option; valid values are Minimal (default), High, and None', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 394, 7), unicode_default='Minimal'))
+CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity'), STD_ANON_, scope=CTD_ANON_7, documentation='BazIO MetricsVerbosity option; valid values are Minimal (default), High, and None', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 394, 7), unicode_default='Minimal'))
def _BuildAutomaton_7 ():
# Remove this helper function from the namespace after it is invoked
@@ -1413,23 +1411,23 @@ def _BuildAutomaton_7 ():
counters = set()
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 362, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 362, 7))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 367, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 367, 7))
st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 372, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 372, 7))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Readout')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 383, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Readout')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 383, 7))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 394, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 394, 7))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
transitions = []
@@ -1456,7 +1454,7 @@ CTD_ANON_7._Automaton = _BuildAutomaton_7()
-CTD_ANON_8._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy'), PapOutputFile, scope=CTD_ANON_8, documentation='Defines the set of files to be copied to the CollectionPathUri. 1 or more. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 375, 10)))
+CTD_ANON_8._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy'), PapOutputFile, scope=CTD_ANON_8, documentation='Defines the set of files to be copied to the CollectionPathUri. 1 or more. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 375, 10)))
def _BuildAutomaton_8 ():
# Remove this helper function from the namespace after it is invoked
@@ -1467,7 +1465,7 @@ def _BuildAutomaton_8 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 375, 10))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 375, 10))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -1480,11 +1478,11 @@ CTD_ANON_8._Automaton = _BuildAutomaton_8()
-CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), pyxb.binding.datatypes.string, scope=CTD_ANON_9, documentation='The secondary analysis protocol name specified in the sample sheet. Ignored by secondary. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 419, 4)))
+CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), pyxb.binding.datatypes.string, scope=CTD_ANON_9, documentation='The secondary analysis protocol name specified in the sample sheet. Ignored by secondary. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 419, 4)))
-CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), CTD_ANON_10, scope=CTD_ANON_9, documentation='The parameters for secondary analysis specified in the sample sheet. Ignored by secondary. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 424, 4)))
+CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), CTD_ANON_10, scope=CTD_ANON_9, documentation='The parameters for secondary analysis specified in the sample sheet. Ignored by secondary. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 424, 4)))
-CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob'), pyxb.binding.datatypes.int, scope=CTD_ANON_9, documentation="The number of cells in this secondary analysis job, identified by the secondary analysis parameter 'JobName'. Supports automated secondary analysis. ", location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 438, 4)))
+CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob'), pyxb.binding.datatypes.int, scope=CTD_ANON_9, documentation="The number of cells in this secondary analysis job, identified by the secondary analysis parameter 'JobName'. Supports automated secondary analysis. ", location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 438, 4)))
def _BuildAutomaton_9 ():
# Remove this helper function from the namespace after it is invoked
@@ -1493,19 +1491,19 @@ def _BuildAutomaton_9 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 424, 4))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 424, 4))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationName')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 419, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationName')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 419, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 424, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 424, 4))
st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 438, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 438, 4))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
@@ -1528,7 +1526,7 @@ CTD_ANON_9._Automaton = _BuildAutomaton_9()
-CTD_ANON_10._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), _ImportedBinding__pbbase.DataEntityType, scope=CTD_ANON_10, documentation='One or more secondary analysis parameters, such as JobName, Workflow, etc..', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 430, 7)))
+CTD_ANON_10._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), _ImportedBinding__pbbase.DataEntityType, scope=CTD_ANON_10, documentation='One or more secondary analysis parameters, such as JobName, Workflow, etc..', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 430, 7)))
def _BuildAutomaton_10 ():
# Remove this helper function from the namespace after it is invoked
@@ -1537,12 +1535,12 @@ def _BuildAutomaton_10 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 430, 7))
+ cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 430, 7))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 430, 7))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 430, 7))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -1555,25 +1553,25 @@ CTD_ANON_10._Automaton = _BuildAutomaton_10()
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellName'), pyxb.binding.datatypes.string, scope=CTD_ANON_12, documentation='Identifies which well this sample came from (e.g., coordinate on a plate). ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 261, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellName'), pyxb.binding.datatypes.string, scope=CTD_ANON_12, documentation='Identifies which well this sample came from (e.g., coordinate on a plate). ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 261, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Concentration'), pyxb.binding.datatypes.double, scope=CTD_ANON_12, documentation='Sample input concentration. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 266, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Concentration'), pyxb.binding.datatypes.double, scope=CTD_ANON_12, documentation='Sample input concentration. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 266, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertSize'), pyxb.binding.datatypes.int, scope=CTD_ANON_12, documentation='Length of the sheared template, e.g. 500, 2000, 30000', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 271, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertSize'), pyxb.binding.datatypes.int, scope=CTD_ANON_12, documentation='Length of the sheared template, e.g. 500, 2000, 30000', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 271, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_12, documentation='Whether or not complex reuse is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 276, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_12, documentation='Whether or not complex reuse is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 276, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_12, documentation='Whether or not hotstart at the stage is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 281, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_12, documentation='Whether or not hotstart at the stage is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 281, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_12, documentation='Whether or not size selection is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 286, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_12, documentation='Whether or not size selection is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 286, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UseCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_12, documentation='Count of usages for this batch of complex. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 291, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UseCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_12, documentation='Count of usages for this batch of complex. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 291, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex'), pyxb.binding.datatypes.string, scope=CTD_ANON_12, documentation='Indicating what kind (if any) control was used. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 296, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex'), pyxb.binding.datatypes.string, scope=CTD_ANON_12, documentation='Indicating what kind (if any) control was used. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 296, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleBarcodeInfo'), _ImportedBinding__pbbase.DataEntityType, scope=CTD_ANON_12, documentation='When utilizing DNA barcoding, store the list of smaple barcodes in this element.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 301, 6)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleBarcodeInfo'), _ImportedBinding__pbbase.DataEntityType, scope=CTD_ANON_12, documentation='When utilizing DNA barcoding, store the list of smaple barcodes in this element.', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 301, 6)))
-CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamplePointers'), _ImportedBinding__pbsample.CTD_ANON_, scope=CTD_ANON_12, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 100, 1)))
+CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamplePointers'), _ImportedBinding__pbsample.CTD_ANON_, scope=CTD_ANON_12, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 100, 1)))
def _BuildAutomaton_11 ():
# Remove this helper function from the namespace after it is invoked
@@ -1582,60 +1580,60 @@ def _BuildAutomaton_11 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 296, 6))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 296, 6))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 301, 6))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 301, 6))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 306, 6))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 306, 6))
counters.add(cc_3)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WellName')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 261, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WellName')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 261, 6))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Concentration')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 266, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Concentration')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 266, 6))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertSize')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 271, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertSize')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 271, 6))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 276, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 276, 6))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 281, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 281, 6))
st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 286, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 286, 6))
st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_6)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'UseCount')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 291, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'UseCount')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 291, 6))
st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_7)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 296, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 296, 6))
st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_8)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleBarcodeInfo')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 301, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleBarcodeInfo')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 301, 6))
st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_9)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamplePointers')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 306, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamplePointers')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 306, 6))
st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_10)
transitions = []
@@ -1700,39 +1698,39 @@ CTD_ANON_12._Automaton = _BuildAutomaton_11()
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer'), pyxb.binding.datatypes.string, scope=CTD_ANON_13, documentation='Instrument control software version. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 38, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer'), pyxb.binding.datatypes.string, scope=CTD_ANON_13, documentation='Instrument control software version. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 38, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer'), pyxb.binding.datatypes.string, scope=CTD_ANON_13, documentation='Signal processing software version. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 43, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer'), pyxb.binding.datatypes.string, scope=CTD_ANON_13, documentation='Signal processing software version. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 43, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automation'), _ImportedBinding__pbbase.AutomationType, scope=CTD_ANON_13, documentation='Defines the collection workflow (e.g., robotic movement, movie acquisition) for a particular cell. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 65, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automation'), _ImportedBinding__pbbase.AutomationType, scope=CTD_ANON_13, documentation='Defines the collection workflow (e.g., robotic movement, movie acquisition) for a particular cell. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 65, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber'), pyxb.binding.datatypes.int, scope=CTD_ANON_13, documentation='Collection number for this plate well. Sample from one plate well or tube can be distributed to more than one cell. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 70, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber'), pyxb.binding.datatypes.int, scope=CTD_ANON_13, documentation='Collection number for this plate well. Sample from one plate well or tube can be distributed to more than one cell. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 70, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellIndex'), pyxb.binding.datatypes.int, scope=CTD_ANON_13, documentation='The zero-based index of this particular cell within the cell tray. Likely to be in the range of [0-3]', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 75, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellIndex'), pyxb.binding.datatypes.int, scope=CTD_ANON_13, documentation='The zero-based index of this particular cell within the cell tray. Likely to be in the range of [0-3]', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 75, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SetNumber'), pyxb.binding.datatypes.unsignedShort, scope=CTD_ANON_13, documentation='Formerly known as the look number. 1 - N. Defaults to 1. 0 if the look is unknown. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 80, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SetNumber'), pyxb.binding.datatypes.unsignedShort, scope=CTD_ANON_13, documentation='Formerly known as the look number. 1 - N. Defaults to 1. 0 if the look is unknown. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 80, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPac'), _ImportedBinding__pbbase.SupplyKitCellPack, scope=CTD_ANON_13, documentation='The SMRT cell packaging supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 85, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPac'), _ImportedBinding__pbbase.SupplyKitCellPack, scope=CTD_ANON_13, documentation='The SMRT cell packaging supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 85, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), _ImportedBinding__pbbase.SupplyKitTemplate, scope=CTD_ANON_13, documentation='Defines the template (sample) prep kit used for this experiment. Can be used to get back to the primary and adapter used. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 90, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), _ImportedBinding__pbbase.SupplyKitTemplate, scope=CTD_ANON_13, documentation='Defines the template (sample) prep kit used for this experiment. Can be used to get back to the primary and adapter used. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 90, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), _ImportedBinding__pbbase.SupplyKitBinding, scope=CTD_ANON_13, documentation='The binding kit supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 95, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), _ImportedBinding__pbbase.SupplyKitBinding, scope=CTD_ANON_13, documentation='The binding kit supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 95, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate'), _ImportedBinding__pbrk.SupplyKitSequencing, scope=CTD_ANON_13, documentation='The sequencing kit supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 100, 6)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate'), _ImportedBinding__pbrk.SupplyKitSequencing, scope=CTD_ANON_13, documentation='The sequencing kit supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 100, 6)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), CTD_ANON_2, scope=CTD_ANON_13, documentation='Information related to an instrument run. A run can contain multiple chips, wells, and movies. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 146, 1)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), CTD_ANON_2, scope=CTD_ANON_13, documentation='Information related to an instrument run. A run can contain multiple chips, wells, and movies. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 146, 1)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Movie'), CTD_ANON_3, scope=CTD_ANON_13, documentation='A movie corresponds to one acquisition for a chip, one set (look) and one strobe. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 185, 1)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Movie'), CTD_ANON_3, scope=CTD_ANON_13, documentation='A movie corresponds to one acquisition for a chip, one set (look) and one strobe. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 185, 1)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), CTD_ANON_4, scope=CTD_ANON_13, documentation='Container for the expired consumable data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 209, 1)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), CTD_ANON_4, scope=CTD_ANON_13, documentation='Container for the expired consumable data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 209, 1)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), CTD_ANON_12, scope=CTD_ANON_13, documentation='Container for the sample related data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 253, 1)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), CTD_ANON_12, scope=CTD_ANON_13, documentation='Container for the sample related data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 253, 1)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Primary'), CTD_ANON_5, scope=CTD_ANON_13, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 319, 1)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Primary'), CTD_ANON_5, scope=CTD_ANON_13, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 319, 1)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), CTD_ANON_9, scope=CTD_ANON_13, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 413, 1)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), CTD_ANON_9, scope=CTD_ANON_13, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 413, 1)))
-CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), _ImportedBinding__pbbase.UserDefinedFieldsType, scope=CTD_ANON_13, documentation='A set of key-value pairs specified by a user via the run input mechanism. Note that uniqueness of keys is not enforced here and so may contain duplicate keys. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 447, 1)))
+CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), _ImportedBinding__pbbase.UserDefinedFieldsType, scope=CTD_ANON_13, documentation='A set of key-value pairs specified by a user via the run input mechanism. Note that uniqueness of keys is not enforced here and so may contain duplicate keys. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 447, 1)))
def _BuildAutomaton_12 ():
# Remove this helper function from the namespace after it is invoked
@@ -1741,120 +1739,120 @@ def _BuildAutomaton_12 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 38, 6))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 38, 6))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 43, 6))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 43, 6))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 48, 6))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 48, 6))
counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 53, 6))
+ cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 53, 6))
counters.add(cc_4)
- cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 70, 6))
+ cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 70, 6))
counters.add(cc_5)
- cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 75, 6))
+ cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 75, 6))
counters.add(cc_6)
- cc_7 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 80, 6))
+ cc_7 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 80, 6))
counters.add(cc_7)
- cc_8 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 85, 6))
+ cc_8 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 85, 6))
counters.add(cc_8)
- cc_9 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 90, 6))
+ cc_9 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 90, 6))
counters.add(cc_9)
- cc_10 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 95, 6))
+ cc_10 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 95, 6))
counters.add(cc_10)
- cc_11 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 100, 6))
+ cc_11 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 100, 6))
counters.add(cc_11)
- cc_12 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 105, 6))
+ cc_12 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 105, 6))
counters.add(cc_12)
- cc_13 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 110, 6))
+ cc_13 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 110, 6))
counters.add(cc_13)
- cc_14 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 115, 6))
+ cc_14 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 115, 6))
counters.add(cc_14)
- cc_15 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 120, 6))
+ cc_15 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 120, 6))
counters.add(cc_15)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 38, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 38, 6))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 43, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 43, 6))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RunDetails')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 48, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RunDetails')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 48, 6))
st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Movie')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 53, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Movie')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 53, 6))
st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = None
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WellSample')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 58, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WellSample')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 58, 6))
st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automation')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 65, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automation')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 65, 6))
st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_6)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_5, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 70, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 70, 6))
st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_7)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_6, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellIndex')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 75, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellIndex')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 75, 6))
st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_8)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_7, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SetNumber')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 80, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SetNumber')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 80, 6))
st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_9)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_8, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPac')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 85, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPac')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 85, 6))
st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_10)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_9, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 90, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 90, 6))
st_11 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_11)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_10, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BindingKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 95, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BindingKit')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 95, 6))
st_12 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_12)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_11, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 100, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 100, 6))
st_13 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_13)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_12, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Primary')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 105, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Primary')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 105, 6))
st_14 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_14)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_13, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Secondary')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 110, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Secondary')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 110, 6))
st_15 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_15)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_14, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 115, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 115, 6))
st_16 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_16)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_15, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioCollectionMetadata.xsd', 120, 6))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioCollectionMetadata.xsd', 120, 6))
st_17 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_17)
transitions = []
diff --git a/pbcore/io/dataset/_pbpn.py b/pbcore/io/dataset/_pbpn.py
deleted file mode 100755
index b1d584a..0000000
--- a/pbcore/io/dataset/_pbpn.py
+++ /dev/null
@@ -1,939 +0,0 @@
-# ./_pbpn.py
-# -*- coding: utf-8 -*-
-# PyXB bindings for NM:20ebb32585e5dee1a245d71277cd3ba8c5a400aa
-# Generated 2015-10-20 16:54:17.039919 by PyXB version 1.2.4 using Python 2.7.6.final.0
-# Namespace http://pacificbiosciences.com/PacBioPartNumbers.xsd [xmlns:pbpn]
-
-from __future__ import unicode_literals
-import pyxb
-import pyxb.binding
-import pyxb.binding.saxer
-import io
-import pyxb.utils.utility
-import pyxb.utils.domutils
-import sys
-import pyxb.utils.six as _six
-
-# Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:df41546a-7785-11e5-88f4-001a4acb6b14')
-
-# Version of PyXB used to generate the bindings
-_PyXBVersion = '1.2.4'
-# Generated bindings are not compatible across PyXB versions
-if pyxb.__version__ != _PyXBVersion:
- raise pyxb.PyXBVersionError(_PyXBVersion)
-
-# Import bindings for namespaces imported into schema
-import pyxb.binding.datatypes
-import _pbrk as _ImportedBinding__pbrk
-import _pbbase as _ImportedBinding__pbbase
-
-# NOTE: All namespace declarations are reserved within the binding
-Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioPartNumbers.xsd', create_if_missing=True)
-Namespace.configureCategories(['typeBinding', 'elementBinding'])
-_Namespace_pbbase = _ImportedBinding__pbbase.Namespace
-_Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding'])
-
-def CreateFromDocument (xml_text, default_namespace=None, location_base=None):
- """Parse the given XML and use the document element to create a
- Python instance.
-
- @param xml_text An XML document. This should be data (Python 2
- str or Python 3 bytes), or a text (Python 2 unicode or Python 3
- str) in the L{pyxb._InputEncoding} encoding.
-
- @keyword default_namespace The L{pyxb.Namespace} instance to use as the
- default namespace where there is no default namespace in scope.
- If unspecified or C{None}, the namespace of the module containing
- this function will be used.
-
- @keyword location_base: An object to be recorded as the base of all
- L{pyxb.utils.utility.Location} instances associated with events and
- objects handled by the parser. You might pass the URI from which
- the document was obtained.
- """
-
- if pyxb.XMLStyle_saxer != pyxb._XMLStyle:
- dom = pyxb.utils.domutils.StringToDOM(xml_text)
- return CreateFromDOM(dom.documentElement, default_namespace=default_namespace)
- if default_namespace is None:
- default_namespace = Namespace.fallbackNamespace()
- saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base)
- handler = saxer.getContentHandler()
- xmld = xml_text
- if isinstance(xmld, _six.text_type):
- xmld = xmld.encode(pyxb._InputEncoding)
- saxer.parse(io.BytesIO(xmld))
- instance = handler.rootObject()
- return instance
-
-def CreateFromDOM (node, default_namespace=None):
- """Create a Python instance from the given DOM node.
- The node tag must correspond to an element declaration in this module.
-
- @deprecated: Forcing use of DOM interface is unnecessary; use L{CreateFromDocument}."""
- if default_namespace is None:
- default_namespace = Namespace.fallbackNamespace()
- return pyxb.binding.basis.element.AnyCreateFromDOM(node, default_namespace)
-
-
-# Atomic simple type: {http://pacificbiosciences.com/PacBioPartNumbers.xsd}PartTypes
-class PartTypes (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin):
-
- """An atomic simple type."""
-
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'PartTypes')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 28, 1)
- _Documentation = None
-PartTypes._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=PartTypes, enum_prefix=None)
-PartTypes.WFA = PartTypes._CF_enumeration.addEnumeration(unicode_value='WFA', tag='WFA')
-PartTypes.BDK = PartTypes._CF_enumeration.addEnumeration(unicode_value='BDK', tag='BDK')
-PartTypes.TPK = PartTypes._CF_enumeration.addEnumeration(unicode_value='TPK', tag='TPK')
-PartTypes.SQK = PartTypes._CF_enumeration.addEnumeration(unicode_value='SQK', tag='SQK')
-PartTypes.CPK = PartTypes._CF_enumeration.addEnumeration(unicode_value='CPK', tag='CPK')
-PartTypes.OSE = PartTypes._CF_enumeration.addEnumeration(unicode_value='OSE', tag='OSE')
-PartTypes.CMO = PartTypes._CF_enumeration.addEnumeration(unicode_value='CMO', tag='CMO')
-PartTypes.Other = PartTypes._CF_enumeration.addEnumeration(unicode_value='Other', tag='Other')
-PartTypes._InitializeFacetMap(PartTypes._CF_enumeration)
-Namespace.addCategoryObject('typeBinding', 'PartTypes', PartTypes)
-
-# Complex type {http://pacificbiosciences.com/PacBioPartNumbers.xsd}PacBioPartNumbersType with content type ELEMENT_ONLY
-class PacBioPartNumbersType (pyxb.binding.basis.complexTypeDefinition):
- """Complex type {http://pacificbiosciences.com/PacBioPartNumbers.xsd}PacBioPartNumbersType with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'PacBioPartNumbersType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 40, 1)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}KeyValueMap uses Python identifier KeyValueMap
- __KeyValueMap = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'KeyValueMap'), 'KeyValueMap', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioBaseDataModel_xsdKeyValueMap', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 760, 1), )
-
-
- KeyValueMap = property(__KeyValueMap.value, __KeyValueMap.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}Automations uses Python identifier Automations
- __Automations = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automations'), 'Automations', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioPartNumbers_xsdAutomations', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 43, 3), )
-
-
- Automations = property(__Automations.value, __Automations.set, None, None)
-
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}BindingKits uses Python identifier BindingKits
- __BindingKits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BindingKits'), 'BindingKits', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioPartNumbers_xsdBindingKits', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 50, 3), )
-
-
- BindingKits = property(__BindingKits.value, __BindingKits.set, None, 'List the binding kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.')
-
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}TemplatePrepKits uses Python identifier TemplatePrepKits
- __TemplatePrepKits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKits'), 'TemplatePrepKits', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioPartNumbers_xsdTemplatePrepKits', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 60, 3), )
-
-
- TemplatePrepKits = property(__TemplatePrepKits.value, __TemplatePrepKits.set, None, 'List the sample prep kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.')
-
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}SequencingKits uses Python identifier SequencingKits
- __SequencingKits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKits'), 'SequencingKits', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioPartNumbers_xsdSequencingKits', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 70, 3), )
-
-
- SequencingKits = property(__SequencingKits.value, __SequencingKits.set, None, 'List the sequencing kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.')
-
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}ControlKits uses Python identifier ControlKits
- __ControlKits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlKits'), 'ControlKits', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioPartNumbers_xsdControlKits', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 80, 3), )
-
-
- ControlKits = property(__ControlKits.value, __ControlKits.set, None, 'List the DNA control complex part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.')
-
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}CellPackKits uses Python identifier CellPackKits
- __CellPackKits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellPackKits'), 'CellPackKits', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioPartNumbers_xsdCellPackKits', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 90, 3), )
-
-
- CellPackKits = property(__CellPackKits.value, __CellPackKits.set, None, 'List the cell tray part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.')
-
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}OtherKits uses Python identifier OtherKits
- __OtherKits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'OtherKits'), 'OtherKits', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioPartNumbers_xsdOtherKits', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 100, 3), )
-
-
- OtherKits = property(__OtherKits.value, __OtherKits.set, None, 'A placeholder for miscellaneous parts, such as OS Enzyme tubes')
-
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}IncompatibleParts uses Python identifier IncompatibleParts
- __IncompatibleParts = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IncompatibleParts'), 'IncompatibleParts', '__httppacificbiosciences_comPacBioPartNumbers_xsd_PacBioPartNumbersType_httppacificbiosciences_comPacBioPartNumbers_xsdIncompatibleParts', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 110, 3), )
-
-
- IncompatibleParts = property(__IncompatibleParts.value, __IncompatibleParts.set, None, None)
-
- _ElementMap.update({
- __KeyValueMap.name() : __KeyValueMap,
- __Automations.name() : __Automations,
- __BindingKits.name() : __BindingKits,
- __TemplatePrepKits.name() : __TemplatePrepKits,
- __SequencingKits.name() : __SequencingKits,
- __ControlKits.name() : __ControlKits,
- __CellPackKits.name() : __CellPackKits,
- __OtherKits.name() : __OtherKits,
- __IncompatibleParts.name() : __IncompatibleParts
- })
- _AttributeMap.update({
-
- })
-Namespace.addCategoryObject('typeBinding', 'PacBioPartNumbersType', PacBioPartNumbersType)
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 44, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}Automation uses Python identifier Automation
- __Automation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automation'), 'Automation', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON_httppacificbiosciences_comPacBioPartNumbers_xsdAutomation', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 46, 6), )
-
-
- Automation = property(__Automation.value, __Automation.set, None, None)
-
- _ElementMap.update({
- __Automation.name() : __Automation
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
- """List the binding kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 54, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}BindingKit uses Python identifier BindingKit
- __BindingKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), 'BindingKit', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON__httppacificbiosciences_comPacBioPartNumbers_xsdBindingKit', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 15, 1), )
-
-
- BindingKit = property(__BindingKit.value, __BindingKit.set, None, None)
-
- _ElementMap.update({
- __BindingKit.name() : __BindingKit
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
- """List the sample prep kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 64, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}TemplatePrepKit uses Python identifier TemplatePrepKit
- __TemplatePrepKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), 'TemplatePrepKit', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioPartNumbers_xsdTemplatePrepKit', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 16, 1), )
-
-
- TemplatePrepKit = property(__TemplatePrepKit.value, __TemplatePrepKit.set, None, None)
-
- _ElementMap.update({
- __TemplatePrepKit.name() : __TemplatePrepKit
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition):
- """List the sequencing kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 74, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}SequencingKit uses Python identifier SequencingKit
- __SequencingKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKit'), 'SequencingKit', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioPartNumbers_xsdSequencingKit', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 14, 1), )
-
-
- SequencingKit = property(__SequencingKit.value, __SequencingKit.set, None, None)
-
- _ElementMap.update({
- __SequencingKit.name() : __SequencingKit
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition):
- """List the DNA control complex part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 84, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}ControlKit uses Python identifier ControlKit
- __ControlKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlKit'), 'ControlKit', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioPartNumbers_xsdControlKit', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 17, 1), )
-
-
- ControlKit = property(__ControlKit.value, __ControlKit.set, None, None)
-
- _ElementMap.update({
- __ControlKit.name() : __ControlKit
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition):
- """List the cell tray part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype."""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 94, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}CellPackKit uses Python identifier CellPackKit
- __CellPackKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellPackKit'), 'CellPackKit', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioPartNumbers_xsdCellPackKit', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 18, 1), )
-
-
- CellPackKit = property(__CellPackKit.value, __CellPackKit.set, None, None)
-
- _ElementMap.update({
- __CellPackKit.name() : __CellPackKit
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_6 (pyxb.binding.basis.complexTypeDefinition):
- """A placeholder for miscellaneous parts, such as OS Enzyme tubes"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 104, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}OtherKit uses Python identifier OtherKit
- __OtherKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'OtherKit'), 'OtherKit', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioPartNumbers_xsdOtherKit', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 19, 1), )
-
-
- OtherKit = property(__OtherKit.value, __OtherKit.set, None, None)
-
- _ElementMap.update({
- __OtherKit.name() : __OtherKit
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_7 (pyxb.binding.basis.complexTypeDefinition):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 111, 4)
- _ElementMap = {}
- _AttributeMap = {}
- # Base type is pyxb.binding.datatypes.anyType
-
- # Element {http://pacificbiosciences.com/PacBioPartNumbers.xsd}IncompatiblePart uses Python identifier IncompatiblePart
- __IncompatiblePart = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IncompatiblePart'), 'IncompatiblePart', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioPartNumbers_xsdIncompatiblePart', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 113, 6), )
-
-
- IncompatiblePart = property(__IncompatiblePart.value, __IncompatiblePart.set, None, None)
-
- _ElementMap.update({
- __IncompatiblePart.name() : __IncompatiblePart
- })
- _AttributeMap.update({
-
- })
-
-
-
-# Complex type [anonymous] with content type ELEMENT_ONLY
-class CTD_ANON_8 (_ImportedBinding__pbbase.PartNumberType):
- """Complex type [anonymous] with content type ELEMENT_ONLY"""
- _TypeDefinition = None
- _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
- _Abstract = False
- _ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 20, 2)
- _ElementMap = _ImportedBinding__pbbase.PartNumberType._ElementMap.copy()
- _AttributeMap = _ImportedBinding__pbbase.PartNumberType._AttributeMap.copy()
- # Base type is _ImportedBinding__pbbase.PartNumberType
-
- # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Element EncodedValue ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}EncodedValue) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
-
- # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
-
- # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
- # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
-
- # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
-
- # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
-
- # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
-
- # Attribute PartNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType
-
- # Attribute LotNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType
-
- # Attribute Barcode inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType
-
- # Attribute ExpirationDate inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType
-
- # Attribute IsObsolete inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType
-
- # Attribute IsRestricted inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType
-
- # Attribute MaxCollections uses Python identifier MaxCollections
- __MaxCollections = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxCollections'), 'MaxCollections', '__httppacificbiosciences_comPacBioPartNumbers_xsd_CTD_ANON_8_MaxCollections', pyxb.binding.datatypes.int)
- __MaxCollections._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 23, 5)
- __MaxCollections._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 23, 5)
-
- MaxCollections = property(__MaxCollections.value, __MaxCollections.set, None, None)
-
- _ElementMap.update({
-
- })
- _AttributeMap.update({
- __MaxCollections.name() : __MaxCollections
- })
-
-
-
-PacBioPartNumbers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioPartNumbers'), PacBioPartNumbersType, documentation='The root element of the Part Numbers ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 9, 1))
-Namespace.addCategoryObject('elementBinding', PacBioPartNumbers.name().localName(), PacBioPartNumbers)
-
-SequencingKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKit'), _ImportedBinding__pbrk.SupplyKitSequencing, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 14, 1))
-Namespace.addCategoryObject('elementBinding', SequencingKit.name().localName(), SequencingKit)
-
-BindingKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), _ImportedBinding__pbbase.SupplyKitBinding, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 15, 1))
-Namespace.addCategoryObject('elementBinding', BindingKit.name().localName(), BindingKit)
-
-TemplatePrepKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), _ImportedBinding__pbbase.SupplyKitTemplate, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 16, 1))
-Namespace.addCategoryObject('elementBinding', TemplatePrepKit.name().localName(), TemplatePrepKit)
-
-ControlKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlKit'), _ImportedBinding__pbbase.SupplyKitControl, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 17, 1))
-Namespace.addCategoryObject('elementBinding', ControlKit.name().localName(), ControlKit)
-
-CellPackKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPackKit'), _ImportedBinding__pbbase.SupplyKitCellPack, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 18, 1))
-Namespace.addCategoryObject('elementBinding', CellPackKit.name().localName(), CellPackKit)
-
-OtherKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'OtherKit'), CTD_ANON_8, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 19, 1))
-Namespace.addCategoryObject('elementBinding', OtherKit.name().localName(), OtherKit)
-
-
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'KeyValueMap'), _ImportedBinding__pbbase.CTD_ANON_16, scope=PacBioPartNumbersType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 760, 1)))
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automations'), CTD_ANON, scope=PacBioPartNumbersType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 43, 3)))
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKits'), CTD_ANON_, scope=PacBioPartNumbersType, documentation='List the binding kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 50, 3)))
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKits'), CTD_ANON_2, scope=PacBioPartNumbersType, documentation='List the sample prep kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 60, 3)))
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKits'), CTD_ANON_3, scope=PacBioPartNumbersType, documentation='List the sequencing kit part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 70, 3)))
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlKits'), CTD_ANON_4, scope=PacBioPartNumbersType, documentation='List the DNA control complex part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 80, 3)))
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPackKits'), CTD_ANON_5, scope=PacBioPartNumbersType, documentation='List the cell tray part numbers. A list of incompatible part numbers and automations is available to specify in the PartNumber subtype.', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 90, 3)))
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'OtherKits'), CTD_ANON_6, scope=PacBioPartNumbersType, documentation='A placeholder for miscellaneous parts, such as OS Enzyme tubes', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 100, 3)))
-
-PacBioPartNumbersType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IncompatibleParts'), CTD_ANON_7, scope=PacBioPartNumbersType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 110, 3)))
-
-def _BuildAutomaton ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton
- del _BuildAutomaton
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 43, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 50, 3))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 60, 3))
- counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 70, 3))
- counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 80, 3))
- counters.add(cc_4)
- cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 90, 3))
- counters.add(cc_5)
- cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 100, 3))
- counters.add(cc_6)
- cc_7 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 110, 3))
- counters.add(cc_7)
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'KeyValueMap')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 42, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automations')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 43, 3))
- st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BindingKits')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 50, 3))
- st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKits')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 60, 3))
- st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_3)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKits')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 70, 3))
- st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_4)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_4, False))
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlKits')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 80, 3))
- st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_5)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_5, False))
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPackKits')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 90, 3))
- st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_6)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_6, False))
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'OtherKits')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 100, 3))
- st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_7)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_7, False))
- symbol = pyxb.binding.content.ElementUse(PacBioPartNumbersType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IncompatibleParts')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 110, 3))
- st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
- states.append(st_8)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- ]))
- transitions.append(fac.Transition(st_2, [
- ]))
- transitions.append(fac.Transition(st_3, [
- ]))
- transitions.append(fac.Transition(st_4, [
- ]))
- transitions.append(fac.Transition(st_5, [
- ]))
- transitions.append(fac.Transition(st_6, [
- ]))
- transitions.append(fac.Transition(st_7, [
- ]))
- transitions.append(fac.Transition(st_8, [
- ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_7, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_8, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_7, [
- fac.UpdateInstruction(cc_1, False) ]))
- transitions.append(fac.Transition(st_8, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_2._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_3, [
- fac.UpdateInstruction(cc_2, True) ]))
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_2, False) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_2, False) ]))
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_2, False) ]))
- transitions.append(fac.Transition(st_7, [
- fac.UpdateInstruction(cc_2, False) ]))
- transitions.append(fac.Transition(st_8, [
- fac.UpdateInstruction(cc_2, False) ]))
- st_3._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_4, [
- fac.UpdateInstruction(cc_3, True) ]))
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_3, False) ]))
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_3, False) ]))
- transitions.append(fac.Transition(st_7, [
- fac.UpdateInstruction(cc_3, False) ]))
- transitions.append(fac.Transition(st_8, [
- fac.UpdateInstruction(cc_3, False) ]))
- st_4._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_5, [
- fac.UpdateInstruction(cc_4, True) ]))
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_4, False) ]))
- transitions.append(fac.Transition(st_7, [
- fac.UpdateInstruction(cc_4, False) ]))
- transitions.append(fac.Transition(st_8, [
- fac.UpdateInstruction(cc_4, False) ]))
- st_5._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_6, [
- fac.UpdateInstruction(cc_5, True) ]))
- transitions.append(fac.Transition(st_7, [
- fac.UpdateInstruction(cc_5, False) ]))
- transitions.append(fac.Transition(st_8, [
- fac.UpdateInstruction(cc_5, False) ]))
- st_6._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_7, [
- fac.UpdateInstruction(cc_6, True) ]))
- transitions.append(fac.Transition(st_8, [
- fac.UpdateInstruction(cc_6, False) ]))
- st_7._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_8, [
- fac.UpdateInstruction(cc_7, True) ]))
- st_8._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-PacBioPartNumbersType._Automaton = _BuildAutomaton()
-
-
-
-
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automation'), _ImportedBinding__pbbase.AutomationType, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 46, 6)))
-
-def _BuildAutomaton_ ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_
- del _BuildAutomaton_
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automation')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 46, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON._Automaton = _BuildAutomaton_()
-
-
-
-
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), _ImportedBinding__pbbase.SupplyKitBinding, scope=CTD_ANON_, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 15, 1)))
-
-def _BuildAutomaton_2 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_2
- del _BuildAutomaton_2
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BindingKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 56, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_._Automaton = _BuildAutomaton_2()
-
-
-
-
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), _ImportedBinding__pbbase.SupplyKitTemplate, scope=CTD_ANON_2, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 16, 1)))
-
-def _BuildAutomaton_3 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_3
- del _BuildAutomaton_3
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 66, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_2._Automaton = _BuildAutomaton_3()
-
-
-
-
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKit'), _ImportedBinding__pbrk.SupplyKitSequencing, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 14, 1)))
-
-def _BuildAutomaton_4 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_4
- del _BuildAutomaton_4
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 76, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_3._Automaton = _BuildAutomaton_4()
-
-
-
-
-CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlKit'), _ImportedBinding__pbbase.SupplyKitControl, scope=CTD_ANON_4, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 17, 1)))
-
-def _BuildAutomaton_5 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_5
- del _BuildAutomaton_5
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 86, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_4._Automaton = _BuildAutomaton_5()
-
-
-
-
-CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPackKit'), _ImportedBinding__pbbase.SupplyKitCellPack, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 18, 1)))
-
-def _BuildAutomaton_6 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_6
- del _BuildAutomaton_6
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPackKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 96, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_5._Automaton = _BuildAutomaton_6()
-
-
-
-
-CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'OtherKit'), CTD_ANON_8, scope=CTD_ANON_6, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 19, 1)))
-
-def _BuildAutomaton_7 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_7
- del _BuildAutomaton_7
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'OtherKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 106, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_6._Automaton = _BuildAutomaton_7()
-
-
-
-
-CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IncompatiblePart'), _ImportedBinding__pbbase.IncompatiblePairType, scope=CTD_ANON_7, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 113, 6)))
-
-def _BuildAutomaton_8 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_8
- del _BuildAutomaton_8
- import pyxb.utils.fac as fac
-
- counters = set()
- states = []
- final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IncompatiblePart')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioPartNumbers.xsd', 113, 6))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- ]))
- st_0._set_transitionSet(transitions)
- return fac.Automaton(states, counters, False, containing_state=None)
-CTD_ANON_7._Automaton = _BuildAutomaton_8()
-
-
-
-
-def _BuildAutomaton_9 ():
- # Remove this helper function from the namespace after it is invoked
- global _BuildAutomaton_9
- del _BuildAutomaton_9
- import pyxb.utils.fac as fac
-
- counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
- counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
- counters.add(cc_2)
- states = []
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
- st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_0)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
- st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_1)
- final_update = set()
- final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
- st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
- states.append(st_2)
- transitions = []
- transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True) ]))
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_0, False) ]))
- st_0._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True) ]))
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_1, False) ]))
- st_1._set_transitionSet(transitions)
- transitions = []
- transitions.append(fac.Transition(st_2, [
- fac.UpdateInstruction(cc_2, True) ]))
- st_2._set_transitionSet(transitions)
- return fac.Automaton(states, counters, True, containing_state=None)
-CTD_ANON_8._Automaton = _BuildAutomaton_9()
-
diff --git a/pbcore/io/dataset/_pbrk.py b/pbcore/io/dataset/_pbrk.py
old mode 100755
new mode 100644
index f78f39a..ec6009c
--- a/pbcore/io/dataset/_pbrk.py
+++ b/pbcore/io/dataset/_pbrk.py
@@ -1,7 +1,7 @@
# ./_pbrk.py
# -*- coding: utf-8 -*-
# PyXB bindings for NM:82fd17ff8c81a0cc423cbd13a9167bcda5f96419
-# Generated 2015-10-20 16:54:17.019441 by PyXB version 1.2.4 using Python 2.7.6.final.0
+# Generated 2015-12-08 13:20:39.138291 by PyXB version 1.2.4 using Python 2.7.6.final.0
# Namespace http://pacificbiosciences.com/PacBioReagentKit.xsd [xmlns:pbrk]
from __future__ import unicode_literals
@@ -15,7 +15,7 @@ import sys
import pyxb.utils.six as _six
# Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:df41546a-7785-11e5-88f4-001a4acb6b14')
+_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:8749368c-9df1-11e5-86b0-001a4acb6b14')
# Version of PyXB used to generate the bindings
_PyXBVersion = '1.2.4'
@@ -82,7 +82,7 @@ class TubeLocation (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeratio
"""An atomic simple type."""
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'TubeLocation')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 122, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 122, 1)
_Documentation = None
TubeLocation._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=TubeLocation, enum_prefix=None)
TubeLocation.ReagentTube0 = TubeLocation._CF_enumeration.addEnumeration(unicode_value='ReagentTube0', tag='ReagentTube0')
@@ -96,7 +96,7 @@ class TubeSize (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mi
"""An atomic simple type."""
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'TubeSize')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 128, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 128, 1)
_Documentation = None
TubeSize._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=TubeSize, enum_prefix=None)
TubeSize.DeepTube = TubeSize._CF_enumeration.addEnumeration(unicode_value='DeepTube', tag='DeepTube')
@@ -110,7 +110,7 @@ class ReagentKey (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_
"""An atomic simple type."""
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentKey')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 134, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 134, 1)
_Documentation = None
ReagentKey._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=ReagentKey, enum_prefix=None)
ReagentKey.Base = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Base', tag='Base')
@@ -146,13 +146,13 @@ class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 11, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 11, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentKit uses Python identifier ReagentKit
- __ReagentKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), 'ReagentKit', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_httppacificbiosciences_comPacBioReagentKit_xsdReagentKit', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 18, 1), )
+ __ReagentKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), 'ReagentKit', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_httppacificbiosciences_comPacBioReagentKit_xsdReagentKit', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 18, 1), )
ReagentKit = property(__ReagentKit.value, __ReagentKit.set, None, None)
@@ -173,13 +173,13 @@ class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 70, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 70, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}Reagent uses Python identifier Reagent
- __Reagent = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), 'Reagent', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON__httppacificbiosciences_comPacBioReagentKit_xsdReagent', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 17, 1), )
+ __Reagent = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), 'Reagent', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON__httppacificbiosciences_comPacBioReagentKit_xsdReagent', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 17, 1), )
Reagent = property(__Reagent.value, __Reagent.set, None, None)
@@ -200,13 +200,13 @@ class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 77, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 77, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentTube uses Python identifier ReagentTube
- __ReagentTube = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), 'ReagentTube', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioReagentKit_xsdReagentTube', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 19, 1), )
+ __ReagentTube = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), 'ReagentTube', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioReagentKit_xsdReagentTube', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 19, 1), )
ReagentTube = property(__ReagentTube.value, __ReagentTube.set, None, None)
@@ -227,13 +227,13 @@ class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 84, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 84, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentPlateRow uses Python identifier ReagentPlateRow
- __ReagentPlateRow = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), 'ReagentPlateRow', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioReagentKit_xsdReagentPlateRow', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 20, 1), )
+ __ReagentPlateRow = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), 'ReagentPlateRow', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioReagentKit_xsdReagentPlateRow', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 20, 1), )
ReagentPlateRow = property(__ReagentPlateRow.value, __ReagentPlateRow.set, None, None)
@@ -254,7 +254,7 @@ class ReagentType (_ImportedBinding__pbbase.BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 54, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 54, 1)
_ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.BaseEntityType
@@ -279,40 +279,40 @@ class ReagentType (_ImportedBinding__pbbase.BaseEntityType):
# Attribute ReagentKey uses Python identifier ReagentKey
__ReagentKey = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ReagentKey'), 'ReagentKey', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_ReagentKey', ReagentKey, required=True)
- __ReagentKey._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 57, 4)
- __ReagentKey._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 57, 4)
+ __ReagentKey._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 57, 4)
+ __ReagentKey._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 57, 4)
ReagentKey = property(__ReagentKey.value, __ReagentKey.set, None, None)
# Attribute PlateColumn uses Python identifier PlateColumn
__PlateColumn = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PlateColumn'), 'PlateColumn', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_PlateColumn', pyxb.binding.datatypes.string, required=True)
- __PlateColumn._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 58, 4)
- __PlateColumn._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 58, 4)
+ __PlateColumn._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 58, 4)
+ __PlateColumn._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 58, 4)
PlateColumn = property(__PlateColumn.value, __PlateColumn.set, None, None)
# Attribute Volume uses Python identifier Volume
__Volume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Volume'), 'Volume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_Volume', pyxb.binding.datatypes.int, required=True)
- __Volume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 59, 4)
- __Volume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 59, 4)
+ __Volume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 59, 4)
+ __Volume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 59, 4)
Volume = property(__Volume.value, __Volume.set, None, None)
# Attribute DeadVolume uses Python identifier DeadVolume
__DeadVolume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DeadVolume'), 'DeadVolume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_DeadVolume', pyxb.binding.datatypes.int, required=True)
- __DeadVolume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 60, 4)
- __DeadVolume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 60, 4)
+ __DeadVolume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 60, 4)
+ __DeadVolume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 60, 4)
DeadVolume = property(__DeadVolume.value, __DeadVolume.set, None, None)
# Attribute ActiveInHour uses Python identifier ActiveInHour
__ActiveInHour = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ActiveInHour'), 'ActiveInHour', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_ActiveInHour', pyxb.binding.datatypes.int, required=True)
- __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 61, 4)
- __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 61, 4)
+ __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 61, 4)
+ __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 61, 4)
ActiveInHour = property(__ActiveInHour.value, __ActiveInHour.set, None, None)
@@ -336,7 +336,7 @@ class ReagentKitType (_ImportedBinding__pbbase.BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentKitType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 65, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 65, 1)
_ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.BaseEntityType
@@ -344,28 +344,28 @@ class ReagentKitType (_ImportedBinding__pbbase.BaseEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ChemistryConfig uses Python identifier ChemistryConfig
- __ChemistryConfig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig'), 'ChemistryConfig', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioBaseDataModel_xsdChemistryConfig', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 789, 1), )
+ __ChemistryConfig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig'), 'ChemistryConfig', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioBaseDataModel_xsdChemistryConfig', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 797, 1), )
ChemistryConfig = property(__ChemistryConfig.value, __ChemistryConfig.set, None, None)
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}Reagents uses Python identifier Reagents
- __Reagents = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Reagents'), 'Reagents', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagents', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 69, 5), )
+ __Reagents = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Reagents'), 'Reagents', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagents', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 69, 5), )
Reagents = property(__Reagents.value, __Reagents.set, None, None)
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentTubes uses Python identifier ReagentTubes
- __ReagentTubes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), 'ReagentTubes', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagentTubes', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 76, 5), )
+ __ReagentTubes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), 'ReagentTubes', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagentTubes', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 76, 5), )
ReagentTubes = property(__ReagentTubes.value, __ReagentTubes.set, None, None)
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentPlateRows uses Python identifier ReagentPlateRows
- __ReagentPlateRows = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows'), 'ReagentPlateRows', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagentPlateRows', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 83, 5), )
+ __ReagentPlateRows = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows'), 'ReagentPlateRows', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagentPlateRows', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 83, 5), )
ReagentPlateRows = property(__ReagentPlateRows.value, __ReagentPlateRows.set, None, None)
@@ -389,40 +389,40 @@ class ReagentKitType (_ImportedBinding__pbbase.BaseEntityType):
# Attribute ProductCode uses Python identifier ProductCode
__ProductCode = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ProductCode'), 'ProductCode', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_ProductCode', pyxb.binding.datatypes.string)
- __ProductCode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 92, 4)
- __ProductCode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 92, 4)
+ __ProductCode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 92, 4)
+ __ProductCode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 92, 4)
ProductCode = property(__ProductCode.value, __ProductCode.set, None, None)
# Attribute PlateType uses Python identifier PlateType
__PlateType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PlateType'), 'PlateType', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_PlateType', pyxb.binding.datatypes.string)
- __PlateType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 93, 4)
- __PlateType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 93, 4)
+ __PlateType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 93, 4)
+ __PlateType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 93, 4)
PlateType = property(__PlateType.value, __PlateType.set, None, None)
# Attribute ActiveInHour uses Python identifier ActiveInHour
__ActiveInHour = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ActiveInHour'), 'ActiveInHour', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_ActiveInHour', pyxb.binding.datatypes.int)
- __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 94, 4)
- __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 94, 4)
+ __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 94, 4)
+ __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 94, 4)
ActiveInHour = property(__ActiveInHour.value, __ActiveInHour.set, None, None)
# Attribute BasesPerSecond uses Python identifier BasesPerSecond
__BasesPerSecond = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'BasesPerSecond'), 'BasesPerSecond', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_BasesPerSecond', pyxb.binding.datatypes.decimal)
- __BasesPerSecond._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 95, 4)
- __BasesPerSecond._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 95, 4)
+ __BasesPerSecond._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 95, 4)
+ __BasesPerSecond._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 95, 4)
BasesPerSecond = property(__BasesPerSecond.value, __BasesPerSecond.set, None, None)
# Attribute AcquisitionCount uses Python identifier AcquisitionCount
__AcquisitionCount = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'AcquisitionCount'), 'AcquisitionCount', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_AcquisitionCount', pyxb.binding.datatypes.int)
- __AcquisitionCount._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 96, 4)
- __AcquisitionCount._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 96, 4)
+ __AcquisitionCount._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 96, 4)
+ __AcquisitionCount._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 96, 4)
AcquisitionCount = property(__AcquisitionCount.value, __AcquisitionCount.set, None, None)
@@ -449,7 +449,7 @@ class ReagentTubeType (_ImportedBinding__pbbase.BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentTubeType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 100, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 100, 1)
_ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.BaseEntityType
@@ -474,64 +474,64 @@ class ReagentTubeType (_ImportedBinding__pbbase.BaseEntityType):
# Attribute ProductCode uses Python identifier ProductCode
__ProductCode = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ProductCode'), 'ProductCode', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_ProductCode', pyxb.binding.datatypes.string, required=True)
- __ProductCode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 103, 4)
- __ProductCode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 103, 4)
+ __ProductCode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 103, 4)
+ __ProductCode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 103, 4)
ProductCode = property(__ProductCode.value, __ProductCode.set, None, None)
# Attribute ReagentKey uses Python identifier ReagentKey
__ReagentKey = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ReagentKey'), 'ReagentKey', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_ReagentKey', ReagentKey, required=True)
- __ReagentKey._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 104, 4)
- __ReagentKey._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 104, 4)
+ __ReagentKey._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 104, 4)
+ __ReagentKey._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 104, 4)
ReagentKey = property(__ReagentKey.value, __ReagentKey.set, None, None)
# Attribute Volume uses Python identifier Volume
__Volume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Volume'), 'Volume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_Volume', pyxb.binding.datatypes.short, required=True)
- __Volume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 105, 4)
- __Volume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 105, 4)
+ __Volume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 105, 4)
+ __Volume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 105, 4)
Volume = property(__Volume.value, __Volume.set, None, None)
# Attribute DeadVolume uses Python identifier DeadVolume
__DeadVolume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DeadVolume'), 'DeadVolume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_DeadVolume', pyxb.binding.datatypes.short, required=True)
- __DeadVolume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 106, 4)
- __DeadVolume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 106, 4)
+ __DeadVolume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 106, 4)
+ __DeadVolume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 106, 4)
DeadVolume = property(__DeadVolume.value, __DeadVolume.set, None, None)
# Attribute ActiveInHour uses Python identifier ActiveInHour
__ActiveInHour = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ActiveInHour'), 'ActiveInHour', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_ActiveInHour', pyxb.binding.datatypes.int, required=True)
- __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 107, 4)
- __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 107, 4)
+ __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 107, 4)
+ __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 107, 4)
ActiveInHour = property(__ActiveInHour.value, __ActiveInHour.set, None, None)
# Attribute TubeWellType uses Python identifier TubeWellType
__TubeWellType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TubeWellType'), 'TubeWellType', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_TubeWellType', TubeSize, required=True)
- __TubeWellType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 108, 4)
- __TubeWellType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 108, 4)
+ __TubeWellType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 108, 4)
+ __TubeWellType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 108, 4)
TubeWellType = property(__TubeWellType.value, __TubeWellType.set, None, None)
# Attribute ReagentTubeType uses Python identifier ReagentTubeType
__ReagentTubeType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ReagentTubeType'), 'ReagentTubeType', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_ReagentTubeType', TubeLocation, required=True)
- __ReagentTubeType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 109, 4)
- __ReagentTubeType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 109, 4)
+ __ReagentTubeType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 109, 4)
+ __ReagentTubeType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 109, 4)
ReagentTubeType = property(__ReagentTubeType.value, __ReagentTubeType.set, None, None)
# Attribute InitialUse uses Python identifier InitialUse
__InitialUse = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InitialUse'), 'InitialUse', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_InitialUse', pyxb.binding.datatypes.dateTime)
- __InitialUse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 110, 4)
- __InitialUse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 110, 4)
+ __InitialUse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 110, 4)
+ __InitialUse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 110, 4)
InitialUse = property(__InitialUse.value, __InitialUse.set, None, None)
@@ -558,7 +558,7 @@ class ReagentPlateRowType (_ImportedBinding__pbbase.BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRowType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 114, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 114, 1)
_ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.BaseEntityType
@@ -583,16 +583,16 @@ class ReagentPlateRowType (_ImportedBinding__pbbase.BaseEntityType):
# Attribute PlateRow uses Python identifier PlateRow
__PlateRow = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PlateRow'), 'PlateRow', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentPlateRowType_PlateRow', pyxb.binding.datatypes.string, required=True)
- __PlateRow._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 117, 4)
- __PlateRow._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 117, 4)
+ __PlateRow._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 117, 4)
+ __PlateRow._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 117, 4)
PlateRow = property(__PlateRow.value, __PlateRow.set, None, None)
# Attribute InitialUse uses Python identifier InitialUse
__InitialUse = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InitialUse'), 'InitialUse', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentPlateRowType_InitialUse', pyxb.binding.datatypes.dateTime)
- __InitialUse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 118, 4)
- __InitialUse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 118, 4)
+ __InitialUse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 118, 4)
+ __InitialUse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 118, 4)
InitialUse = property(__InitialUse.value, __InitialUse.set, None, None)
@@ -613,7 +613,7 @@ class SupplyKitSequencing (_ImportedBinding__pbbase.PartNumberType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitSequencing')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 21, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 21, 1)
_ElementMap = _ImportedBinding__pbbase.PartNumberType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.PartNumberType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.PartNumberType
@@ -625,28 +625,28 @@ class SupplyKitSequencing (_ImportedBinding__pbbase.PartNumberType):
# Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentAutomationName uses Python identifier ReagentAutomationName
- __ReagentAutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName'), 'ReagentAutomationName', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdReagentAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 28, 5), )
+ __ReagentAutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName'), 'ReagentAutomationName', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdReagentAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 28, 5), )
ReagentAutomationName = property(__ReagentAutomationName.value, __ReagentAutomationName.set, None, 'The reagent-mixing protocol used. ')
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentTubes uses Python identifier ReagentTubes
- __ReagentTubes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), 'ReagentTubes', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdReagentTubes', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 33, 5), )
+ __ReagentTubes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), 'ReagentTubes', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdReagentTubes', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 33, 5), )
ReagentTubes = property(__ReagentTubes.value, __ReagentTubes.set, None, "Tubes associated with the reagent kit - can have up to two; don't forget to set the location, 0 or 1")
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}SequencingChemistry uses Python identifier SequencingChemistry
- __SequencingChemistry = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry'), 'SequencingChemistry', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdSequencingChemistry', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 38, 5), )
+ __SequencingChemistry = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry'), 'SequencingChemistry', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdSequencingChemistry', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 38, 5), )
SequencingChemistry = property(__SequencingChemistry.value, __SequencingChemistry.set, None, None)
# Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}SequencingKitDefinition uses Python identifier SequencingKitDefinition
- __SequencingKitDefinition = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition'), 'SequencingKitDefinition', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdSequencingKitDefinition', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 39, 5), )
+ __SequencingKitDefinition = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition'), 'SequencingKitDefinition', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdSequencingKitDefinition', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 39, 5), )
SequencingKitDefinition = property(__SequencingKitDefinition.value, __SequencingKitDefinition.set, None, None)
@@ -690,16 +690,16 @@ class SupplyKitSequencing (_ImportedBinding__pbbase.PartNumberType):
# Attribute Location uses Python identifier Location
__Location = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Location'), 'Location', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_Location', pyxb.binding.datatypes.int, unicode_default='0')
- __Location._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 41, 4)
- __Location._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 41, 4)
+ __Location._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 41, 4)
+ __Location._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 41, 4)
Location = property(__Location.value, __Location.set, None, 'The location of the supply kit - for a reagent plate, it could be 0 or 1, and for a tube it could be 0 or 1')
# Attribute MaxCollections uses Python identifier MaxCollections
__MaxCollections = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxCollections'), 'MaxCollections', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_MaxCollections', pyxb.binding.datatypes.int, unicode_default='8')
- __MaxCollections._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 46, 4)
- __MaxCollections._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 46, 4)
+ __MaxCollections._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 46, 4)
+ __MaxCollections._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 46, 4)
MaxCollections = property(__MaxCollections.value, __MaxCollections.set, None, 'The number of collections this supply kit is capable of')
@@ -716,24 +716,24 @@ class SupplyKitSequencing (_ImportedBinding__pbbase.PartNumberType):
Namespace.addCategoryObject('typeBinding', 'SupplyKitSequencing', SupplyKitSequencing)
-PacBioReagentKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioReagentKit'), CTD_ANON, documentation='The root element of the reagent kit standalone file', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 7, 1))
+PacBioReagentKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioReagentKit'), CTD_ANON, documentation='The root element of the reagent kit standalone file', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 7, 1))
Namespace.addCategoryObject('elementBinding', PacBioReagentKit.name().localName(), PacBioReagentKit)
-Reagent = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), ReagentType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 17, 1))
+Reagent = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), ReagentType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 17, 1))
Namespace.addCategoryObject('elementBinding', Reagent.name().localName(), Reagent)
-ReagentKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 18, 1))
+ReagentKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 18, 1))
Namespace.addCategoryObject('elementBinding', ReagentKit.name().localName(), ReagentKit)
-ReagentTube = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), ReagentTubeType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 19, 1))
+ReagentTube = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), ReagentTubeType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 19, 1))
Namespace.addCategoryObject('elementBinding', ReagentTube.name().localName(), ReagentTube)
-ReagentPlateRow = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), ReagentPlateRowType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 20, 1))
+ReagentPlateRow = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), ReagentPlateRowType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 20, 1))
Namespace.addCategoryObject('elementBinding', ReagentPlateRow.name().localName(), ReagentPlateRow)
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), ReagentKitType, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 18, 1)))
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), ReagentKitType, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 18, 1)))
def _BuildAutomaton ():
# Remove this helper function from the namespace after it is invoked
@@ -744,7 +744,7 @@ def _BuildAutomaton ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 13, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 13, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -755,7 +755,7 @@ CTD_ANON._Automaton = _BuildAutomaton()
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), ReagentType, scope=CTD_ANON_, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 17, 1)))
+CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), ReagentType, scope=CTD_ANON_, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 17, 1)))
def _BuildAutomaton_ ():
# Remove this helper function from the namespace after it is invoked
@@ -766,7 +766,7 @@ def _BuildAutomaton_ ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Reagent')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 72, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Reagent')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 72, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -779,7 +779,7 @@ CTD_ANON_._Automaton = _BuildAutomaton_()
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), ReagentTubeType, scope=CTD_ANON_2, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 19, 1)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), ReagentTubeType, scope=CTD_ANON_2, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 19, 1)))
def _BuildAutomaton_2 ():
# Remove this helper function from the namespace after it is invoked
@@ -790,7 +790,7 @@ def _BuildAutomaton_2 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 79, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 79, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -803,7 +803,7 @@ CTD_ANON_2._Automaton = _BuildAutomaton_2()
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), ReagentPlateRowType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 20, 1)))
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), ReagentPlateRowType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 20, 1)))
def _BuildAutomaton_3 ():
# Remove this helper function from the namespace after it is invoked
@@ -814,7 +814,7 @@ def _BuildAutomaton_3 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 86, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 86, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -834,12 +834,12 @@ def _BuildAutomaton_4 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(ReagentType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(ReagentType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -852,13 +852,13 @@ ReagentType._Automaton = _BuildAutomaton_4()
-ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig'), _ImportedBinding__pbbase.SequencingChemistryConfig, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 789, 1)))
+ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig'), _ImportedBinding__pbbase.SequencingChemistryConfig, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 797, 1)))
-ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagents'), CTD_ANON_, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 69, 5)))
+ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagents'), CTD_ANON_, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 69, 5)))
-ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), CTD_ANON_2, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 76, 5)))
+ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), CTD_ANON_2, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 76, 5)))
-ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows'), CTD_ANON_3, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 83, 5)))
+ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows'), CTD_ANON_3, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 83, 5)))
def _BuildAutomaton_5 ():
# Remove this helper function from the namespace after it is invoked
@@ -867,27 +867,27 @@ def _BuildAutomaton_5 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = None
- symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = None
- symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Reagents')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 69, 5))
+ symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Reagents')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 69, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = None
- symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 76, 5))
+ symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 76, 5))
st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = None
- symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 83, 5))
+ symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 83, 5))
st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 90, 5))
+ symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 90, 5))
st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
transitions = []
@@ -923,12 +923,12 @@ def _BuildAutomaton_6 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(ReagentTubeType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(ReagentTubeType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -948,12 +948,12 @@ def _BuildAutomaton_7 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(ReagentPlateRowType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(ReagentPlateRowType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -966,13 +966,13 @@ ReagentPlateRowType._Automaton = _BuildAutomaton_7()
-SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName'), pyxb.binding.datatypes.string, scope=SupplyKitSequencing, documentation='The reagent-mixing protocol used. ', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 28, 5)))
+SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName'), pyxb.binding.datatypes.string, scope=SupplyKitSequencing, documentation='The reagent-mixing protocol used. ', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 28, 5)))
-SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), SupplyKitSequencing, scope=SupplyKitSequencing, documentation="Tubes associated with the reagent kit - can have up to two; don't forget to set the location, 0 or 1", location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 33, 5)))
+SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), SupplyKitSequencing, scope=SupplyKitSequencing, documentation="Tubes associated with the reagent kit - can have up to two; don't forget to set the location, 0 or 1", location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 33, 5)))
-SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry'), _ImportedBinding__pbbase.SequencingChemistry, scope=SupplyKitSequencing, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 38, 5)))
+SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry'), _ImportedBinding__pbbase.SequencingChemistry, scope=SupplyKitSequencing, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 38, 5)))
-SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition'), ReagentKitType, scope=SupplyKitSequencing, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 39, 5)))
+SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition'), ReagentKitType, scope=SupplyKitSequencing, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 39, 5)))
def _BuildAutomaton_8 ():
# Remove this helper function from the namespace after it is invoked
@@ -981,54 +981,54 @@ def _BuildAutomaton_8 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
counters.add(cc_2)
- cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 28, 5))
+ cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 28, 5))
counters.add(cc_3)
- cc_4 = fac.CounterCondition(min=0, max=2, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 33, 5))
+ cc_4 = fac.CounterCondition(min=0, max=2, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 33, 5))
counters.add(cc_4)
- cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 38, 5))
+ cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 38, 5))
counters.add(cc_5)
- cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 39, 5))
+ cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 39, 5))
counters.add(cc_6)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 188, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'EncodedValue')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 188, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 193, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 193, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_3, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 28, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 28, 5))
st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_3)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_4, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 33, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 33, 5))
st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_4)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_5, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 38, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 38, 5))
st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_5)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_6, False))
- symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioReagentKit.xsd', 39, 5))
+ symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioReagentKit.xsd', 39, 5))
st_6 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_6)
transitions = []
diff --git a/pbcore/io/dataset/_pbsample.py b/pbcore/io/dataset/_pbsample.py
old mode 100755
new mode 100644
index 4061f2e..00a3f68
--- a/pbcore/io/dataset/_pbsample.py
+++ b/pbcore/io/dataset/_pbsample.py
@@ -1,7 +1,7 @@
# ./_pbsample.py
# -*- coding: utf-8 -*-
# PyXB bindings for NM:a7c0866985dba806fe3112e9fbc4707c9f978443
-# Generated 2015-10-20 16:54:17.015326 by PyXB version 1.2.4 using Python 2.7.6.final.0
+# Generated 2015-12-08 13:20:39.140813 by PyXB version 1.2.4 using Python 2.7.6.final.0
# Namespace http://pacificbiosciences.com/PacBioSampleInfo.xsd [xmlns:pbsample]
from __future__ import unicode_literals
@@ -15,7 +15,7 @@ import sys
import pyxb.utils.six as _six
# Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:df41546a-7785-11e5-88f4-001a4acb6b14')
+_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:8749368c-9df1-11e5-86b0-001a4acb6b14')
# Version of PyXB used to generate the bindings
_PyXBVersion = '1.2.4'
@@ -83,13 +83,13 @@ class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 19, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 19, 6)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}Barcode uses Python identifier Barcode
- __Barcode = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Barcode'), 'Barcode', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBarcode', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 21, 8), )
+ __Barcode = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Barcode'), 'Barcode', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBarcode', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 21, 8), )
Barcode = property(__Barcode.value, __Barcode.set, None, 'A sequence of barcodes associated with the biological sample')
@@ -110,20 +110,20 @@ class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 104, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 104, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamplePointer uses Python identifier BioSamplePointer
- __BioSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), 'BioSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointer', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 111, 5), )
+ __BioSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), 'BioSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointer', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 111, 5), )
BioSamplePointer = property(__BioSamplePointer.value, __BioSamplePointer.set, None, 'Pointer to a single biological sample')
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BarcodedSamplePointers uses Python identifier BarcodedSamplePointers
- __BarcodedSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), 'BarcodedSamplePointers', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 120, 1), )
+ __BarcodedSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), 'BarcodedSamplePointers', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 120, 1), )
BarcodedSamplePointers = property(__BarcodedSamplePointers.value, __BarcodedSamplePointers.set, None, 'Back references to other BarcodedSampleType object UniqueIds which utilize this sample')
@@ -145,13 +145,13 @@ class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 124, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 124, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BarcodedSamplePointer uses Python identifier BarcodedSamplePointer
- __BarcodedSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), 'BarcodedSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointer', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 126, 4), )
+ __BarcodedSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), 'BarcodedSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointer', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 126, 4), )
BarcodedSamplePointer = property(__BarcodedSamplePointer.value, __BarcodedSamplePointer.set, None, 'Pointer to a group of barcoded samples')
@@ -172,13 +172,13 @@ class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 135, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 135, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSample uses Python identifier BioSample
- __BioSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), 'BioSample', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioSampleInfo_xsdBioSample', True, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 141, 1), )
+ __BioSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), 'BioSample', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioSampleInfo_xsdBioSample', True, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 141, 1), )
BioSample = property(__BioSample.value, __BioSample.set, None, None)
@@ -199,7 +199,7 @@ class BioSampleType (_ImportedBinding__pbbase.StrictEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BioSampleType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 33, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 33, 1)
_ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.StrictEntityType
@@ -207,7 +207,7 @@ class BioSampleType (_ImportedBinding__pbbase.StrictEntityType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamples uses Python identifier BioSamples
- __BioSamples = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), 'BioSamples', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamples', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 134, 1), )
+ __BioSamples = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), 'BioSamples', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamples', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 134, 1), )
BioSamples = property(__BioSamples.value, __BioSamples.set, None, None)
@@ -237,88 +237,88 @@ class BioSampleType (_ImportedBinding__pbbase.StrictEntityType):
# Attribute DateReceived uses Python identifier DateReceived
__DateReceived = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DateReceived'), 'DateReceived', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DateReceived', pyxb.binding.datatypes.dateTime)
- __DateReceived._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 42, 4)
- __DateReceived._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 42, 4)
+ __DateReceived._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 42, 4)
+ __DateReceived._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 42, 4)
DateReceived = property(__DateReceived.value, __DateReceived.set, None, 'Date the sample was received by the lab')
# Attribute Organism uses Python identifier Organism
__Organism = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Organism', pyxb.binding.datatypes.string)
- __Organism._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 47, 4)
- __Organism._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 47, 4)
+ __Organism._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 47, 4)
+ __Organism._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 47, 4)
Organism = property(__Organism.value, __Organism.set, None, 'e.g. HIV, E.coli')
# Attribute Reference uses Python identifier Reference
__Reference = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Reference'), 'Reference', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Reference', pyxb.binding.datatypes.string)
- __Reference._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 52, 4)
- __Reference._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 52, 4)
+ __Reference._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 52, 4)
+ __Reference._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 52, 4)
Reference = property(__Reference.value, __Reference.set, None, 'Name of reference, or pointer to one at e.g. NCBI RefSeq')
# Attribute DNAType uses Python identifier DNAType
__DNAType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DNAType'), 'DNAType', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DNAType', pyxb.binding.datatypes.string)
- __DNAType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 57, 4)
- __DNAType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 57, 4)
+ __DNAType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 57, 4)
+ __DNAType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 57, 4)
DNAType = property(__DNAType.value, __DNAType.set, None, 'shotgun library, amplicon, etc.')
# Attribute Concentration uses Python identifier Concentration
__Concentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Concentration', pyxb.binding.datatypes.float)
- __Concentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 62, 4)
- __Concentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 62, 4)
+ __Concentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 62, 4)
+ __Concentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 62, 4)
Concentration = property(__Concentration.value, __Concentration.set, None, 'in ng/uL, e.g. 250')
# Attribute QuantificationMethod uses Python identifier QuantificationMethod
__QuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'QuantificationMethod'), 'QuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_QuantificationMethod', pyxb.binding.datatypes.string)
- __QuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 67, 4)
- __QuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 67, 4)
+ __QuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 67, 4)
+ __QuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 67, 4)
QuantificationMethod = property(__QuantificationMethod.value, __QuantificationMethod.set, None, 'e.g. Qubit')
# Attribute SMRTBellConcentration uses Python identifier SMRTBellConcentration
__SMRTBellConcentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SMRTBellConcentration'), 'SMRTBellConcentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellConcentration', pyxb.binding.datatypes.float)
- __SMRTBellConcentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 72, 4)
- __SMRTBellConcentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 72, 4)
+ __SMRTBellConcentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 72, 4)
+ __SMRTBellConcentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 72, 4)
SMRTBellConcentration = property(__SMRTBellConcentration.value, __SMRTBellConcentration.set, None, 'in ng/uL, e.g. 4.5')
# Attribute SMRTBellQuantificationMethod uses Python identifier SMRTBellQuantificationMethod
__SMRTBellQuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SMRTBellQuantificationMethod'), 'SMRTBellQuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellQuantificationMethod', pyxb.binding.datatypes.string)
- __SMRTBellQuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 77, 4)
- __SMRTBellQuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 77, 4)
+ __SMRTBellQuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 77, 4)
+ __SMRTBellQuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 77, 4)
SMRTBellQuantificationMethod = property(__SMRTBellQuantificationMethod.value, __SMRTBellQuantificationMethod.set, None, 'e.g. Qubit')
# Attribute BufferName uses Python identifier BufferName
__BufferName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'BufferName'), 'BufferName', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_BufferName', pyxb.binding.datatypes.string)
- __BufferName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 82, 4)
- __BufferName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 82, 4)
+ __BufferName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 82, 4)
+ __BufferName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 82, 4)
BufferName = property(__BufferName.value, __BufferName.set, None, 'e.g. Tris HCl')
# Attribute SamplePrepKit uses Python identifier SamplePrepKit
__SamplePrepKit = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SamplePrepKit'), 'SamplePrepKit', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SamplePrepKit', pyxb.binding.datatypes.string)
- __SamplePrepKit._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 87, 4)
- __SamplePrepKit._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 87, 4)
+ __SamplePrepKit._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 87, 4)
+ __SamplePrepKit._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 87, 4)
SamplePrepKit = property(__SamplePrepKit.value, __SamplePrepKit.set, None, 'e.g. SMRTbell Template Prep Kit')
# Attribute TargetLibrarySize uses Python identifier TargetLibrarySize
__TargetLibrarySize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TargetLibrarySize'), 'TargetLibrarySize', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_TargetLibrarySize', pyxb.binding.datatypes.string)
- __TargetLibrarySize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 92, 4)
- __TargetLibrarySize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 92, 4)
+ __TargetLibrarySize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 92, 4)
+ __TargetLibrarySize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 92, 4)
TargetLibrarySize = property(__TargetLibrarySize.value, __TargetLibrarySize.set, None, '2000, 10000, 20000')
@@ -348,7 +348,7 @@ class BarcodedSampleType (BioSampleType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BarcodedSampleType')
- _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 8, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 8, 1)
_ElementMap = BioSampleType._ElementMap.copy()
_AttributeMap = BioSampleType._AttributeMap.copy()
# Base type is BioSampleType
@@ -356,7 +356,7 @@ class BarcodedSampleType (BioSampleType):
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}Barcodes uses Python identifier Barcodes
- __Barcodes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Barcodes'), 'Barcodes', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BarcodedSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodes', False, pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 15, 5), )
+ __Barcodes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Barcodes'), 'Barcodes', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BarcodedSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodes', False, pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 15, 5), )
Barcodes = property(__Barcodes.value, __Barcodes.set, None, 'A list of barcodes associated with the biological sample')
@@ -416,21 +416,21 @@ class BarcodedSampleType (BioSampleType):
Namespace.addCategoryObject('typeBinding', 'BarcodedSampleType', BarcodedSampleType)
-BioSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointers'), CTD_ANON_, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 100, 1))
+BioSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointers'), CTD_ANON_, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 100, 1))
Namespace.addCategoryObject('elementBinding', BioSamplePointers.name().localName(), BioSamplePointers)
-BarcodedSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_2, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 120, 1))
+BarcodedSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_2, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 120, 1))
Namespace.addCategoryObject('elementBinding', BarcodedSamplePointers.name().localName(), BarcodedSamplePointers)
-BioSamples = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 134, 1))
+BioSamples = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 134, 1))
Namespace.addCategoryObject('elementBinding', BioSamples.name().localName(), BioSamples)
-BioSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 141, 1))
+BioSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 141, 1))
Namespace.addCategoryObject('elementBinding', BioSample.name().localName(), BioSample)
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Barcode'), _ImportedBinding__pbbase.DNABarcode, scope=CTD_ANON, documentation='A sequence of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 21, 8)))
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Barcode'), _ImportedBinding__pbbase.DNABarcode, scope=CTD_ANON, documentation='A sequence of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 21, 8)))
def _BuildAutomaton ():
# Remove this helper function from the namespace after it is invoked
@@ -439,12 +439,12 @@ def _BuildAutomaton ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 21, 8))
+ cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 21, 8))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Barcode')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 21, 8))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Barcode')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 21, 8))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -457,9 +457,9 @@ CTD_ANON._Automaton = _BuildAutomaton()
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_, documentation='Pointer to a single biological sample', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 111, 5)))
+CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_, documentation='Pointer to a single biological sample', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 111, 5)))
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_2, scope=CTD_ANON_, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 120, 1)))
+CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_2, scope=CTD_ANON_, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 120, 1)))
def _BuildAutomaton_ ():
# Remove this helper function from the namespace after it is invoked
@@ -470,11 +470,11 @@ def _BuildAutomaton_ ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 110, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 110, 5))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 111, 5))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 111, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
@@ -487,7 +487,7 @@ CTD_ANON_._Automaton = _BuildAutomaton_()
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_2, documentation='Pointer to a group of barcoded samples', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 126, 4)))
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_2, documentation='Pointer to a group of barcoded samples', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 126, 4)))
def _BuildAutomaton_2 ():
# Remove this helper function from the namespace after it is invoked
@@ -498,7 +498,7 @@ def _BuildAutomaton_2 ():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 126, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 126, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -511,7 +511,7 @@ CTD_ANON_2._Automaton = _BuildAutomaton_2()
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 141, 1)))
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 141, 1)))
def _BuildAutomaton_3 ():
# Remove this helper function from the namespace after it is invoked
@@ -520,12 +520,12 @@ def _BuildAutomaton_3 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 137, 4))
+ cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 137, 4))
counters.add(cc_0)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSample')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 137, 4))
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSample')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 137, 4))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
@@ -538,7 +538,7 @@ CTD_ANON_3._Automaton = _BuildAutomaton_3()
-BioSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_3, scope=BioSampleType, location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 134, 1)))
+BioSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_3, scope=BioSampleType, location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 134, 1)))
def _BuildAutomaton_4 ():
# Remove this helper function from the namespace after it is invoked
@@ -547,19 +547,19 @@ def _BuildAutomaton_4 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 40, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 40, 5))
counters.add(cc_1)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 40, 5))
+ symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 40, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
@@ -578,7 +578,7 @@ BioSampleType._Automaton = _BuildAutomaton_4()
-BarcodedSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Barcodes'), CTD_ANON, scope=BarcodedSampleType, documentation='A list of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 15, 5)))
+BarcodedSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Barcodes'), CTD_ANON, scope=BarcodedSampleType, documentation='A list of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 15, 5)))
def _BuildAutomaton_5 ():
# Remove this helper function from the namespace after it is invoked
@@ -587,26 +587,26 @@ def _BuildAutomaton_5 ():
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 40, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 40, 5))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 15, 5))
+ cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 15, 5))
counters.add(cc_2)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(BarcodedSampleType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioBaseDataModel.xsd', 86, 3))
+ symbol = pyxb.binding.content.ElementUse(BarcodedSampleType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioBaseDataModel.xsd', 86, 3))
st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(BarcodedSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 40, 5))
+ symbol = pyxb.binding.content.ElementUse(BarcodedSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 40, 5))
st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(BarcodedSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Barcodes')), pyxb.utils.utility.Location('/tmp/tmpJw7dnLxsds/PacBioSampleInfo.xsd', 15, 5))
+ symbol = pyxb.binding.content.ElementUse(BarcodedSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Barcodes')), pyxb.utils.utility.Location('/tmp/tmpiM7rWfxsds/PacBioSampleInfo.xsd', 15, 5))
st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_2)
transitions = []
diff --git a/pbcore/io/dataset/utils.py b/pbcore/io/dataset/utils.py
index 9794780..a99690f 100755
--- a/pbcore/io/dataset/utils.py
+++ b/pbcore/io/dataset/utils.py
@@ -17,15 +17,24 @@ def consolidateBams(inFiles, outFile, filterDset=None, useTmp=True):
# check space available
if useTmp:
tmpout = tempfile.mkdtemp(suffix="consolidation-filtration")
- if (disk_free(os.path.split(outFile)[0]) >
- sum(file_size(infn) for infn in inFiles)):
+ local_free_space = disk_free(os.path.split(outFile)[0])
+ tmp_free_space = disk_free(tmpout)
+ projected_size = sum(file_size(infn) for infn in inFiles)
+ log.debug("Projected size: {p}".format(p=projected_size))
+ log.debug("In place free space: {f}".format(f=local_free_space))
+ log.debug("Tmp free space: {f}".format(f=tmp_free_space))
+ if tmp_free_space > projected_size:
+ log.debug("Using tmp storage: " + tmpout)
tmpInFiles = _tmpFiles(inFiles, tmpout)
origOutFile = outFile
origInFiles = inFiles[:]
inFiles = tmpInFiles
outFile = os.path.join(tmpout, "outfile.bam")
- else:
+ elif local_free_space > projected_size:
+ log.debug("Using in place storage")
useTmp = False
+ else:
+ raise RuntimeError("No space available to consolidate")
if filterDset and filterDset.filters:
finalOutfile = outFile
@@ -40,6 +49,8 @@ def consolidateBams(inFiles, outFile, filterDset=None, useTmp=True):
shutil.copy(outFile, origOutFile)
shutil.copy(outFile + ".bai", origOutFile + ".bai")
shutil.copy(outFile + ".pbi", origOutFile + ".pbi")
+ # cleanup:
+ shutil.rmtree(os.path.split(outFile)[0])
def _tmpFiles(inFiles, tmpout=None):
tmpInFiles = []
@@ -68,7 +79,43 @@ def _pbindexBam(fname):
raise RuntimeError(m)
return fname + ".pbi"
+# Singleton so we don't need to check and parse repeatedly
+class BamtoolsVersion:
+ class __BamtoolsVersion:
+ def __init__(self):
+ cmd = "bamtools -v"
+ o, r, m = backticks(cmd)
+
+ if r == 127:
+ self.good = False
+ return
+
+ version = ''
+ for line in o:
+ if line.startswith("bamtools"):
+ version = line.split(' ')[-1]
+ break
+ self.number = version
+ if map(int, version.split('.')) >= [2, 4, 0]:
+ self.good = True
+ else:
+ self.good = False
+
+ instance = None
+ def __init__(self):
+ if not BamtoolsVersion.instance:
+ BamtoolsVersion.instance = BamtoolsVersion.__BamtoolsVersion()
+
+ def __getattr__(self, name):
+ return getattr(self.instance, name)
+
+ def check(self):
+ if not self.good:
+ raise RuntimeError("Bamtools version >= 2.4.0 required for "
+ "consolidation")
+
def _sortBam(fname):
+ BamtoolsVersion().check()
tmpname = _infixFname(fname, "_sorted")
cmd = "bamtools sort -in {i} -out {o}".format(i=fname, o=tmpname)
log.info(cmd)
@@ -86,6 +133,7 @@ def _indexFasta(fname):
return fname + ".fai"
def _mergeBams(inFiles, outFile):
+ BamtoolsVersion().check()
if len(inFiles) > 1:
cmd = "bamtools merge -in {i} -out {o}".format(i=' -in '.join(inFiles),
o=outFile)
@@ -97,6 +145,7 @@ def _mergeBams(inFiles, outFile):
shutil.copy(inFiles[0], outFile)
def _filterBam(inFile, outFile, filterDset):
+ BamtoolsVersion().check()
tmpout = tempfile.mkdtemp(suffix="consolidation-filtration")
filtScriptName = os.path.join(tmpout, "filtScript.json")
_emitFilterScript(filterDset, filtScriptName)
diff --git a/pbcore/io/opener.py b/pbcore/io/opener.py
index 96031cd..c5f5999 100644
--- a/pbcore/io/opener.py
+++ b/pbcore/io/opener.py
@@ -37,7 +37,7 @@ from pbcore.io import (IndexedFastaReader, FastaReader,
BaxH5Reader, BasH5Reader, BasH5Collection,
CmpH5Reader, BamReader, IndexedBamReader,
GffReader, FastqReader,
- PacBioBamIndex)
+ PacBioBamIndex, openDataSet)
def openIndexedAlignmentFile(fname, referenceFastaFname=None, sharedIndex=None):
"""
@@ -78,6 +78,7 @@ def _openersFor(ext):
elif ext == "fofn": return (BasH5Collection,)
elif ext == "bam": return (IndexedBamReader, BamReader)
elif ext == "pbi": return (PacBioBamIndex,)
+ elif ext == "xml": return (openDataSet,)
else:
raise ValueError, ("No known opener class for extension %s" % ext)
diff --git a/requirements-dev.txt b/requirements-dev.txt
index 80e9144..0af0380 100644
--- a/requirements-dev.txt
+++ b/requirements-dev.txt
@@ -1,3 +1,2 @@
--r requirements.txt
sphinx
nose
diff --git a/requirements.txt b/requirements.txt
index 442bf70..22e02eb 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,4 +1,4 @@
cython
numpy >= 1.7.1
h5py >= 2.0.1
-pysam >= 0.8.1
+pysam >= 0.8.4
diff --git a/setup.cfg b/setup.cfg
index 8c9157d..b88034e 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,8 +1,2 @@
[metadata]
description-file = README.md
-
-[egg_info]
-tag_build =
-tag_date = 0
-tag_svn_revision = 0
-
diff --git a/setup.py b/setup.py
index 084ece4..5a2037f 100755
--- a/setup.py
+++ b/setup.py
@@ -3,6 +3,7 @@
from setuptools import setup, Extension, find_packages
import sys
+import os
if ("install" in sys.argv) and sys.version_info < (2, 7, 0):
print "pbcore requires Python 2.7"
@@ -12,6 +13,24 @@ globals = {}
execfile("pbcore/__init__.py", globals)
__VERSION__ = globals["__VERSION__"]
+
+_REQUIREMENTS_FILE = 'requirements.txt'
+_REQUIREMENTS_TEST_FILE = "requirements-dev.txt"
+
+
+def _get_local_file(file_name):
+ return os.path.join(os.path.dirname(__file__), file_name)
+
+
+def _get_requirements(file_name):
+ with open(file_name, 'r') as f:
+ reqs = [line for line in f if not line.startswith("#")]
+ return reqs
+
+
+def _get_local_requirements(file_name):
+ return _get_requirements(_get_local_file(file_name))
+
setup(
name = 'pbcore',
version=__VERSION__,
@@ -32,8 +51,6 @@ setup(
zip_safe = False,
entry_points = { "console_scripts" : [ ".open = pbcore.io.opener:entryPoint" ] },
scripts=['bin/dataset.py'],
- install_requires=[
- 'h5py >= 2.0.1',
- 'numpy >= 1.7.1',
- 'pysam >= 0.8.1'
- ])
+ install_requires=_get_local_requirements(_REQUIREMENTS_FILE),
+ tests_require=_get_local_requirements(_REQUIREMENTS_TEST_FILE)
+)
diff --git a/tests/test_pbcore_io_BasH5Reader.py b/tests/test_pbcore_io_BasH5Reader.py
index a1d5e10..43cdfeb 100644
--- a/tests/test_pbcore_io_BasH5Reader.py
+++ b/tests/test_pbcore_io_BasH5Reader.py
@@ -70,16 +70,20 @@ class TestBasH5Reader_14:
"""Test that BasH5Reader can read the region table and find
HQ, insert, and adapter regions.
"""
-
zmw = self.bas1[7]
numpy.testing.assert_array_equal(
- numpy.array([[ 7, 1, 0, 299, -1],
- [ 7, 1, 343, 991, -1],
- [ 7, 1, 1032, 1840, -1],
- [ 7, 0, 299, 343, 681],
- [ 7, 0, 991, 1032, 804],
- [ 7, 2, 0, 1578, 0]], dtype=numpy.int32),
- zmw.regionTable.view(dtype=(numpy.int32, 5)))
+ numpy.array([(7, 1, 0, 299, -1),
+ (7, 1, 343, 991, -1),
+ (7, 1, 1032, 1840, -1),
+ (7, 0, 299, 343, 681),
+ (7, 0, 991, 1032, 804),
+ (7, 2, 0, 1578, 0)],
+ dtype=(numpy.record, [('holeNumber', '<i4'),
+ ('regionType', '<i4'),
+ ('regionStart', '<i4'),
+ ('regionEnd', '<i4'),
+ ('regionScore', '<i4')])),
+ zmw.regionTable.view(dtype=numpy.ndarray))
nose.tools.assert_equal((0, 1578), zmw.hqRegion)
nose.tools.assert_equal([(299, 343), (991, 1032)], zmw.adapterRegions)
diff --git a/tests/test_pbcore_io_GffIO.py b/tests/test_pbcore_io_GffIO.py
index d2e86b1..24c1b5c 100644
--- a/tests/test_pbcore_io_GffIO.py
+++ b/tests/test_pbcore_io_GffIO.py
@@ -9,6 +9,10 @@ from pbcore.io import GffWriter, Gff3Record, GffReader
from pbcore.io.GffIO import merge_gffs, merge_gffs_sorted, sort_gff
from pbcore import data
+def rm_out(fname):
+ if os.path.exists(fname):
+ os.remove(fname)
+
class TestGff3Record:
def setup(self):
@@ -171,6 +175,7 @@ chr1\tkinModCall\tmodified_base\t16348\t16348\t42\t-\t.\tcoverage=115;context=CC
])
n_rec_merged = len([ rec for rec in f ])
self.assertEqual(n_rec, n_rec_merged)
+ rm_out(gff_out)
def test_merge_gffs_sorted(self):
gff_out = "tmp_pbcore_merged_sorted.gff"
@@ -178,9 +183,11 @@ chr1\tkinModCall\tmodified_base\t16348\t16348\t42\t-\t.\tcoverage=115;context=CC
with GffReader(gff_out) as f:
start = [ (rec.seqid, rec.start) for rec in f ]
self.assertEqual(start, self.sorted_start)
+ rm_out(gff_out)
def test_sort_gff(self):
gff_out = sort_gff(self.combined)
with GffReader(gff_out) as f:
start = [ (rec.seqid, rec.start) for rec in f ]
self.assertEqual(start, self.sorted_start)
+ rm_out(gff_out)
diff --git a/tests/test_pbdataset.py b/tests/test_pbdataset.py
index a1086af..f571fb7 100644
--- a/tests/test_pbdataset.py
+++ b/tests/test_pbdataset.py
@@ -12,14 +12,17 @@ from unittest.case import SkipTest
from pbcore.io import PacBioBamIndex, IndexedBamReader
from pbcore.io import openIndexedAlignmentFile
+from pbcore.io.dataset.utils import BamtoolsVersion
from pbcore.io import (DataSet, SubreadSet, ReferenceSet, AlignmentSet,
- openDataSet, DataSetMetaTypes, HdfSubreadSet)
+ openDataSet, DataSetMetaTypes, HdfSubreadSet,
+ ConsensusReadSet, ConsensusAlignmentSet)
from pbcore.io.dataset.DataSetIO import _dsIdToSuffix
from pbcore.io.dataset.DataSetMembers import ExternalResource, Filters
from pbcore.io.dataset.DataSetWriter import toXml
from pbcore.io.dataset.DataSetValidator import validateFile
from pbcore.util.Process import backticks
import pbcore.data.datasets as data
+import pbcore.data as upstreamdata
log = logging.getLogger(__name__)
@@ -29,9 +32,8 @@ def _check_constools():
if r != 2:
return False
- cmd = "bamtools"
- o, r, m = backticks(cmd)
- if r != 0:
+ if not BamtoolsVersion().good:
+ log.warn("Bamtools not found or out of date")
return False
cmd = "pbindex"
@@ -204,7 +206,6 @@ class TestDataSet(unittest.TestCase):
os.path.join(outdir, os.path.basename(data.getXml(12)))))
log.debug("Relative")
- outdir = tempfile.mkdtemp(suffix="dataset-unittest")
cmd = ("dataset.py create --relative --type AlignmentSet "
"{o} {i1} {i2}".format(
o=os.path.join(outdir, 'pbalchemysim.alignmentset.xml'),
@@ -216,6 +217,19 @@ class TestDataSet(unittest.TestCase):
self.assertTrue(os.path.exists(
os.path.join(outdir, os.path.basename(data.getXml(12)))))
+ log.debug("Emtpy ContigSet")
+ emptyfastafile = tempfile.NamedTemporaryFile(suffix=".fasta")
+ emptyfasta = emptyfastafile.name
+ emptycontigset = os.path.join(outdir, 'empty.contigset.xml')
+ cmd = ("dataset.py create --relative --type ContigSet "
+ "{o} {i}".format(
+ o=emptycontigset,
+ i=emptyfasta))
+ log.debug(cmd)
+ o, r, m = backticks(cmd)
+ self.assertEqual(r, 0)
+ self.assertTrue(os.path.exists(emptycontigset))
+
def test_empty_metatype(self):
inBam = data.getBam()
d = DataSet(inBam)
@@ -229,6 +243,84 @@ class TestDataSet(unittest.TestCase):
self.assertEqual(extRes.metaType,
"PacBio.AlignmentFile.AlignmentBamFile")
+ @unittest.skipIf(not _check_constools(),
+ "bamtools or pbindex not found, skipping")
+ def test_empty_file_counts(self):
+ # empty with pbi:
+ dset = SubreadSet(upstreamdata.getEmptyBam())
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ # Don't care what they are, just don't want them to fail:
+ dset.updateCounts()
+ dset.index
+ self.assertEqual(len(dset.resourceReaders()), 1)
+
+ dset = AlignmentSet(upstreamdata.getEmptyBam())
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ dset.updateCounts()
+ dset.index
+ self.assertEqual(len(dset.resourceReaders()), 1)
+
+ dset = ConsensusReadSet(upstreamdata.getEmptyBam())
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ dset.updateCounts()
+ dset.index
+ self.assertEqual(len(dset.resourceReaders()), 1)
+
+ dset = ConsensusAlignmentSet(upstreamdata.getEmptyBam())
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ dset.updateCounts()
+ dset.index
+ self.assertEqual(len(dset.resourceReaders()), 1)
+
+ # empty without pbi:
+ outdir = tempfile.mkdtemp(suffix="dataset-unittest")
+ outfile = os.path.split(upstreamdata.getEmptyBam())[1]
+ outpath = os.path.join(outdir, outfile)
+ shutil.copy(upstreamdata.getEmptyBam(), outpath)
+ dset = SubreadSet(outpath)
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ dset.updateCounts()
+ self.assertEqual(len(dset.resourceReaders()), 1)
+
+ dset = AlignmentSet(outpath)
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ dset.updateCounts()
+ self.assertEqual(len(dset.resourceReaders()), 1)
+
+ dset = ConsensusReadSet(outpath)
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ dset.updateCounts()
+ self.assertEqual(len(dset.resourceReaders()), 1)
+
+ dset = ConsensusAlignmentSet(outpath)
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ dset.updateCounts()
+ self.assertEqual(len(dset.resourceReaders()), 1)
+ dset.induceIndices()
+ dset = ConsensusAlignmentSet(outpath)
+ self.assertEqual(dset.numRecords, 0)
+ self.assertEqual(dset.totalLength, 0)
+ self.assertEqual(len(list(dset)), 0)
+ dset.updateCounts()
+ self.assertEqual(len(dset.resourceReaders()), 1)
+
+
def test_loading_reference(self):
log.info('Opening Reference')
r = ReferenceSet(data.getRef()).toExternalFiles()[0]
@@ -310,8 +402,8 @@ class TestDataSet(unittest.TestCase):
tempout = os.path.join(outdir, os.path.basename(data_fname))
backticks('cp {i} {o}'.format(i=data_fname, o=tempout))
aln = AlignmentSet(tempout, strict=False)
- self.assertEqual(aln.totalLength, -1)
- self.assertEqual(aln.numRecords, -1)
+ self.assertEqual(aln.totalLength, 0)
+ self.assertEqual(aln.numRecords, 0)
@unittest.skipUnless(os.path.isdir("/pbi/dept/secondary/siv/testdata"),
"Missing testadata directory")
@@ -323,7 +415,7 @@ class TestDataSet(unittest.TestCase):
bam = IndexedBamReader(testFile)
pbi = PacBioBamIndex(testFile + '.pbi')
for brec, prec in zip(bam, pbi):
- brec_bc = brec.peer.opt("bc")
+ brec_bc = list(brec.peer.opt("bc"))
prec_bc = [prec.bcForward, prec.bcReverse]
self.assertEqual(brec_bc, prec_bc)
@@ -495,6 +587,7 @@ class TestDataSet(unittest.TestCase):
dss[0].zmwRanges,
[('m150404_101626_42267_c100807920800000001823174110291514_s1_p0',
55, 1815)])
+ #55, 2865)])
@unittest.skipUnless(os.path.isdir("/pbi/dept/secondary/siv/testdata"),
"Missing testadata directory")
diff --git a/tests/test_pbdataset_subtypes.py b/tests/test_pbdataset_subtypes.py
index bc30ddb..bf8637e 100644
--- a/tests/test_pbdataset_subtypes.py
+++ b/tests/test_pbdataset_subtypes.py
@@ -7,7 +7,8 @@ import os
import itertools
from pbcore.util.Process import backticks
-from pbcore.io.dataset.utils import consolidateBams, _infixFname
+from pbcore.io.dataset.utils import (consolidateBams, _infixFname,
+ BamtoolsVersion)
from pbcore.io import (DataSet, SubreadSet, ConsensusReadSet,
ReferenceSet, ContigSet, AlignmentSet,
FastaReader, FastaWriter, IndexedFastaReader,
@@ -26,9 +27,8 @@ def _check_constools():
if r != 2:
return False
- cmd = "bamtools"
- o, r, m = backticks(cmd)
- if r != 0:
+ if not BamtoolsVersion().good:
+ log.warn("Bamtools not found or out of date")
return False
cmd = "pbindex"
@@ -69,7 +69,6 @@ class TestDataSet(unittest.TestCase):
self.assertEquals(type(ds4._metadata).__name__, 'SubreadSetMetadata')
self.assertEquals(len(ds4.metadata.collections), 1)
- @unittest.skip("XSD can't handle multiple contigs?")
def test_valid_referencesets(self):
validateXml(ET.parse(data.getXml(9)).getroot(), skipResources=True)
@@ -186,6 +185,18 @@ class TestDataSet(unittest.TestCase):
# make sure a __repr__ didn't slip through:
self.assertFalse(rec.sequence.startswith('<'))
+ def test_contigset_empty(self):
+ fa_file = tempfile.NamedTemporaryFile(suffix=".fasta").name
+ ds_file = tempfile.NamedTemporaryFile(suffix=".contigset.xml").name
+ open(fa_file, "w").write("")
+ ds = ContigSet(fa_file, strict=False)
+ ds.write(ds_file)
+ fai_file = fa_file + ".fai"
+ open(fai_file, "w").write("")
+ ds = ContigSet(fa_file, strict=True)
+ ds.write(ds_file)
+ self.assertEqual(len(ds), 0)
+
def test_file_factory(self):
# TODO: add ConsensusReadSet, cmp.h5 alignmentSet
types = [AlignmentSet(data.getXml(8)),
--
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