[med-svn] [python-pbcore] 06/08: Prevent requirements.txt from triggering download of unnecessary dependency

[Afif Elghraoui]

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commit 3c1a87c7c33bdaa4a70ba99c48e21385785047ff
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sun Dec 13 19:17:34 2015 -0800

    Prevent requirements.txt from triggering download of unnecessary dependency
---
 debian/patches/remove-unnecessary-cython-dep.patch | 14 ++++++++++++++
 debian/patches/series                              |  1 +
 2 files changed, 15 insertions(+)

diff --git a/debian/patches/remove-unnecessary-cython-dep.patch b/debian/patches/remove-unnecessary-cython-dep.patch
new file mode 100644
index 0000000..b2bb61a
--- /dev/null
+++ b/debian/patches/remove-unnecessary-cython-dep.patch
@@ -0,0 +1,14 @@
+Description: Remove cython from requirements.txt
+ Upstream now reads build dependencies from this file,
+ but Cython isn't needed and setup.py therefore tries
+ to download it (unsuccessfully).
+Author: Afif Elghraoui <afif at ghraoui.name
+Forwarded: no
+Last-Update: 2015-12-13
+--- python-pbcore.orig/requirements.txt
++++ python-pbcore/requirements.txt
+@@ -1,4 +1,3 @@
+-cython
+ numpy >= 1.7.1
+ h5py >= 2.0.1
+ pysam >= 0.8.4
diff --git a/debian/patches/series b/debian/patches/series
index 57f5ddc..df144f3 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 doc-theme.patch
 enable-build-time-testing.patch
+remove-unnecessary-cython-dep.patch

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