[med-svn] [libsbml] branch master created (now f960374)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository libsbml.

        at  f960374   cme fix dpkg-control; make sure libsbml5-matlab remains commented out

This branch includes the following new commits:

       new  dcff0cb   Creating trunk directory
       new  b27fbad   [svn-inject] Applying Debian modifications to trunk
       new  e1c26c1   Corrected the location of the svn-injected libsbml.
       new  ccf7c49   
       new  dfff731   
       new  77b9319   * Remove redundant file.
       new  c0288b8   * Add / fix build dependencies
       new  f385498   * Silencer (`-') is only valid before the command line.
       new  ff05679   * Add matlib support patch to 00list * Add patch to cope with a swig oddity (reproducible with 1.3.29)
       new  57f1dd5   * Add deb-generated files to svn:ignore
       new  4c3e671   * Reenable java support in dicussion with Steffen. * Remove gcc / g++ dependencies and add build-essentials instead. * Use java-compiler for flexibility.
       new  275b036   Declaring VCS in debian/control
       new  19d5d98   upstream update, remove all bindings temporary
       new  552916d   It's the watch file party! :-D
       new  6985793   Removing obsolete XS- prefix
       new  31c3ed2   * Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed * Added ?rev=0&sc=0 to Vcs-Browser fields * Sanitized Vcs-* fields
       new  dbd00f5   Updating Standards-Version to 3.7.3
       new  a8604c4   * New upstream release
       new  3d1a378   * Import my local copies of libsbml build files.
       new  e2f0634   * Upstream update.
       new  c599fba   * no contrib ..
       new  fca2f3f   * Revert some unintended changes. * Fix Standards-Version.
       new  57226c9   * Typos.
       new  522777d   Cleaning debian/changelog
       new  853d2e3   Using dh7
       new  353eefb   Initial debian/control cleanup
       new  90e1bc3   Updated Steffen's email address.
       new  5308a3b   * Synching with my local repository.
       new  1a8ccb6   * Forgot to add this file.
       new  985d676   s/Debian-Med/Debian Med
       new  11f831c   first try to build libsbml5
       new  e1bc09a   set mergeWithUpstream 1 for svn-buildpackage
       new  06ce00b   readded trunk updated the libsbml version
       new  a755d8c   added the documentation packages for octave, cil, removed matlab bindings
       new  d440574   debian/watch became case insensitive
       new  6a0a116   Some patches for the sanity of the build process.
       new  7941f4e   control build dependencies adjusted explaining patches.
       new  3bea77b   added matlab suppport (non-free)
       new  c0d8241   debian/rules checks now for matlab and modifies the debian/control file
       new  fa0bffc   
       new  ebacd5d   
       new  251a314   
       new  45ed50b   added the get-orig-source target update from upstream
       new  23d5c73   updated the control.in for libsbml 5.2.0
       new  cfa4241   fixed the build rules for octave
       new  3fd10f3   Suggesting -dev from examples rather than depending on it.
       new  ed303aa   Found two bugs to associated with libsbml ... where has it gone, btw?
       new  bfa1511   Reverted r9267: There is no point in closing previosely archived bugs and the package was just uploaded anyway
       new  ce59115   updated libsbml to version 5.4.0
       new  9d128d9   updated to 5.4.1 debian/rules now detects the libsbml-version with dpkg-parsechangelog
       new  77822dd   Somehow the lcoses statements of initial upload were lost
       new  2c45c0a   Please always tag unreleased changelog paragraphs with UNRELEASED
       new  e80c098   Debhelper 8; Added Homepage field in debian/control; removed useless template comments in debian/rules
       new  af2fdbd   Removed debian/control.in - this file can be of some use in connection with cdbs but here it seems to serve basically the use of a backup file and might lead to confusion
       new  b16d24e   added the dependecy to swig for libsbml5-python re-added debian/control.in - it allows to build libsbml5-matlab, if matlab is found
       new  7be7885   Added the "Closes: #665837" entry
       new  5577b23   Rename README to some default name
       new  917c540   Commit changelog entry according to latest change
       new  bc52676   Fix get-orig-source target and remove hints from README.source how to do this manually
       new  9c8b74a   Add citation information
       new  eab1ec3   No point in installing debian/README.source
       new  43bbf66   changed debian/copyright to be DEP5 compatible
       new  53e5fa8   
       new  39d7acc   a lot of changes to remove hardcoded dependencies, fix the install process for different architectures (see debian/changelog)
       new  c759639   Added closed bug; upload to unstable
       new  a4ee756   some tweaks regarding lintian remarks
       new  005162d   debian/changelog: updated the package to 5.4.1-2 debian/docs is not used
       new  1d4800e   repaired the build process for building without matlab
       new  40d315b   prepare release
       new  939226b   use dependency on swig only
       new  69fb62d   Ivo uses Matlab with SBML in his daily routine. There is no way he can maintain the package without that Matlab link.  Octave is not a substitute, was tested. We once came up with this approach of having the control file adapted to show and build the libsbml5-matlab package when the development files for Matlab are available and not if not. This way, everything works fine on all architectures, with (amd64 only) Matlab or without.
       new  eb768c0   Use proper UTF-8 encoding in debian/upstream
       new  72de1b9   removed the strange entry in debian/control*
       new  f8ca535   Make author field BibTeX compliant
       new  c631b31   More precise authors information and in addition make the string working with Michael Banck's algorithm for tasks pages
       new  80bc14e   Fix Vcs fields globally in all remaining packages because I'm bored by warnings in logfiles when investigating machine readable files of not yet uploaded packages
       new  c60e916   please upload... overridden lintian-errors for some hardening options
       new  63ef139   Fix Vcs-Svn field
       new  3837557   Deleted symbols files
       new  47f4064   Preparing for new upload.
       new  53d2a00   updated package added some options to the build process still some trouble with hardening
       new  fd60a5a   libsbml_5.8.0 seems to be ready for upload some major changes: switch to cmake, (re)added doc packages
       new  d77c325   added libsbml5-dev to libsbml5-cli dependency
       new  f9fe479   cme fix dpkg-control
       new  a61354a   Canonical Vcs fields
       new  c8b837d   Enable compiling with -Werror=format-security
       new  59857d3   Do not try to install not existing override
       new  baed139   Upload to unstable
       new  2c3317c   Put *.m files in the Octave path
       new  e28c2b1   Move debian/upstream to debian/upstream/metadata
       new  4c72bad   New upstream version (adapt patches where they are applying, see whether more fixing is needed)
       new  2390bf8   Try to build with unversioned ruby dpendencies.  Build fails but probably not due to the Ruby change
       new  1a4dca2   fixed some build stopper removed ruby bindings, they actually don't work with ruby1.9
       new  ca71fef   prettify.js must be removed from source and replaced by the code in package libjs-extjs-doc; moreover repackaging the tarball in clean is a no-go
       new  3efd8c3   reactivated the clean target in debian/rules updated debian/README.source
       new  08e6da9   Normalise changelog related to previous release (there is no point in keeping track of unreleased changes)
       new  2393500   some minor changes to compile the newest source one problem: at least for me the command "debian/rules get-orig-source" don't exclude the in "debian/copyright" under Files-Excluded: mentioned directory
       new  31a0c29   only minor changes
       new  06f81e9   Enable using xz compressed source tarballs; drop never released changelog entry and merge everything into to be uploaded paragraph
       new  8e2c1b5   should now work with xz tarballs get-orig-source pulls now the current version and not necessary the newest removed the obsolete build-dependency for python-support
       new  55a1c0d   Explicitly ask for xz compression of original source
       new  091c1f9   
       new  badc57a   added debian/source/options to ignore files, which are created or changed  during the build (and are not removed by "make clean")
       new  822c12d   fixed some links, updated cmake_opts, cleared up debian/rules
       new  d8cd98f   rebuild with latest libperl
       new  ad5ce6b   added the patches by gregor herrmann <gregoa at debian.org> as a solution for an annoying lintian error
       new  d7eeda9   Ivo, please make sure you will submit a complete patch next time.  Thanks.
       new  11ecfd7   Set proper file permissions to enable execution of install script
       new  0a316f3   DEP3
       new  bf8cbae   Finally upload to unstable
       new  168356a   According to https://lists.debian.org/debian-bsd/2014/09/msg00133.html libsbml requires openjdk - so we drop all alternatives from the dependency list
       new  1bc686b     * Upstream update   * install of octave bindings is more robust (could work also on other     architectures than amd64/i386)   * some work to get more lintian-compiant...
       new  5a8e00e   new upstream update
       new  8e39cac   Mass-commit to fix all open bugs and upgrade to latest upstream version - unfortunately build fails with "Cannot generate java documentation, please specify the Java_JAVADOC_JAR"
       new  c8838d6   Build failed so this is actually UNRELEASED
       new  9b0ad1d   Imported Upstream version 5.10.0+dfsg
       new  b2ed972   Imported Upstream version 5.10.0+dfsg
       new  656e6d1   Imported Upstream version 5.12.0+dfsg
       new  1641348   Merge tag 'upstream/5.12.0+dfsg'
       new  d794d03   Reinject debian/ dir
       new  3b2342e   move packaging from SVN to Gi
       new  189247d   Enhance descriptions
       new  f960374   cme fix dpkg-control; make sure libsbml5-matlab remains commented out

The 123 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


-- 
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