[med-svn] [cain] branch master updated (3f3fe8e -> d1c2152)
Andreas Tille
tille at debian.org
Thu Dec 17 21:35:54 UTC 2015
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository cain.
from 3f3fe8e Moved packaging from SVN to Git
new a1900f9 For whatever reason version 1.9-9 was never released (even if it should have been)
new 6d07ec5 Refresh patches
new 793ed6a Fix Files-Excluded to remove only the compiled binaries but not the sources
new 157b5ac Add missing +dfsg to version
new b846fde Imported Upstream version 1.10+dfsg
new 6771116 Merge tag 'upstream/1.10+dfsg'
new d1c2152 Adapt patches to tarball including src/solvers
The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
debian/changelog | 20 +-
debian/copyright | 2 +-
debian/patches/cain.patch | 40 +---
debian/patches/eigen3.patch | 2 +-
debian/patches/gcc-4.7.patch | 6 +-
debian/patches/hardening.patch | 6 +-
debian/patches/help.patch | 4 +-
src/solvers/HomogeneousDirect.ipp | 250 ++++++++++++++++++++
src/solvers/HomogeneousDirect2DSearch.cc | 11 +
src/solvers/HomogeneousDirect2DSearch.d | 39 ++++
src/solvers/HomogeneousDirect2DSearchBubbleSort.cc | 11 +
src/solvers/HomogeneousDirect2DSearchBubbleSort.d | 44 ++++
src/solvers/HomogeneousDirect2DSearchSorted.cc | 11 +
src/solvers/HomogeneousDirect2DSearchSorted.d | 44 ++++
src/solvers/HomogeneousDirectAllReactions.ipp | 257 +++++++++++++++++++++
.../HomogeneousDirectAllReactions2DSearch.cc | 11 +
.../HomogeneousDirectAllReactions2DSearch.d | 41 ++++
src/solvers/HomogeneousDirectBinarySearch.cc | 12 +
src/solvers/HomogeneousDirectBinarySearch.d | 34 +++
.../HomogeneousDirectBinarySearchRecursiveCdf.cc | 13 ++
.../HomogeneousDirectBinarySearchRecursiveCdf.d | 35 +++
src/solvers/HomogeneousDirectBinarySearchSorted.cc | 14 ++
src/solvers/HomogeneousDirectBinarySearchSorted.d | 41 ++++
.../HomogeneousDirectCompositionRejection.cc | 12 +
.../HomogeneousDirectCompositionRejection.d | 39 ++++
src/solvers/HomogeneousDirectLinearSearch.cc | 12 +
src/solvers/HomogeneousDirectLinearSearch.d | 39 ++++
.../HomogeneousDirectLinearSearchBubbleSort.cc | 12 +
.../HomogeneousDirectLinearSearchBubbleSort.d | 43 ++++
.../HomogeneousDirectLinearSearchDelayedUpdate.cc | 12 +
.../HomogeneousDirectLinearSearchDelayedUpdate.d | 39 ++++
src/solvers/HomogeneousDirectLinearSearchSorted.cc | 14 ++
src/solvers/HomogeneousDirectLinearSearchSorted.d | 45 ++++
.../HomogeneousDirectRejectionBinsSplitting.cc | 13 ++
.../HomogeneousDirectRejectionBinsSplitting.d | 45 ++++
src/solvers/HomogeneousFirstReaction.cc | 20 ++
src/solvers/HomogeneousFirstReaction.d | 29 +++
src/solvers/HomogeneousFirstReaction.ipp | 193 ++++++++++++++++
.../HomogeneousFirstReactionAbsoluteTime.cc | 22 ++
src/solvers/HomogeneousFirstReactionAbsoluteTime.d | 31 +++
src/solvers/HomogeneousFirstReactionInfluence.cc | 22 ++
src/solvers/HomogeneousFirstReactionInfluence.d | 31 +++
...ogeneousHistogramFinalHypoexponentialDirect.ipp | 193 ++++++++++++++++
...sHistogramFinalHypoexponentialDirect2DSearch.cc | 9 +
...usHistogramFinalHypoexponentialDirect2DSearch.d | 38 +++
src/solvers/HomogeneousHistogramsAverage.cc | 11 +
src/solvers/HomogeneousHistogramsAverage.d | 43 ++++
src/solvers/HomogeneousHistogramsAverage.ipp | 207 +++++++++++++++++
src/solvers/HomogeneousHistogramsAverageAps.cc | 11 +
src/solvers/HomogeneousHistogramsAverageAps.d | 44 ++++
src/solvers/HomogeneousHistogramsAverageAps.ipp | 207 +++++++++++++++++
.../HomogeneousHistogramsAverageElapsedTime.cc | 11 +
.../HomogeneousHistogramsAverageElapsedTime.d | 46 ++++
.../HomogeneousHistogramsAverageElapsedTime.ipp | 207 +++++++++++++++++
src/solvers/HomogeneousHistogramsDirect.ipp | 190 +++++++++++++++
src/solvers/HomogeneousHistogramsDirect2DSearch.cc | 11 +
src/solvers/HomogeneousHistogramsDirect2DSearch.d | 43 ++++
src/solvers/HomogeneousHistogramsDirectTree.cc | 11 +
src/solvers/HomogeneousHistogramsDirectTree.d | 42 ++++
src/solvers/HomogeneousHistogramsDirectTree.ipp | 197 ++++++++++++++++
.../HomogeneousHistogramsMultiTimeDirect.ipp | 195 ++++++++++++++++
...HomogeneousHistogramsMultiTimeDirect2DSearch.cc | 11 +
.../HomogeneousHistogramsMultiTimeDirect2DSearch.d | 44 ++++
.../HomogeneousHistogramsTransientDirect.ipp | 184 +++++++++++++++
...HistogramsTransientDirectTreeExponentialLast.cc | 25 ++
...sHistogramsTransientDirectTreeExponentialLast.d | 44 ++++
...istogramsTransientDirectTreeExponentialLimit.cc | 25 ++
...HistogramsTransientDirectTreeExponentialLimit.d | 44 ++++
...gramsTransientDirectTreeHypoexponentialLimit.cc | 26 +++
...ogramsTransientDirectTreeHypoexponentialLimit.d | 45 ++++
...ogramsTransientDirectTreeNormalApproximation.cc | 26 +++
...togramsTransientDirectTreeNormalApproximation.d | 45 ++++
src/solvers/HomogeneousHybridDirectTauLeaping.ipp | 181 +++++++++++++++
.../HomogeneousHybridDirectTauLeapingForward.cc | 7 +
.../HomogeneousHybridDirectTauLeapingForward.d | 51 ++++
.../HomogeneousHybridDirectTauLeapingMidpoint.cc | 7 +
.../HomogeneousHybridDirectTauLeapingMidpoint.d | 51 ++++
...HomogeneousHybridDirectTauLeapingRungeKutta4.cc | 7 +
.../HomogeneousHybridDirectTauLeapingRungeKutta4.d | 51 ++++
src/solvers/HomogeneousNextReaction.ipp | 246 ++++++++++++++++++++
...HomogeneousNextReactionBinaryHeapGibsonBruck.cc | 11 +
.../HomogeneousNextReactionBinaryHeapGibsonBruck.d | 37 +++
.../HomogeneousNextReactionBinaryHeapPair.cc | 9 +
.../HomogeneousNextReactionBinaryHeapPair.d | 37 +++
.../HomogeneousNextReactionBinaryHeapPointer.cc | 9 +
.../HomogeneousNextReactionBinaryHeapPointer.d | 37 +++
src/solvers/HomogeneousNextReactionHashing.cc | 11 +
src/solvers/HomogeneousNextReactionHashing.d | 37 +++
.../HomogeneousNextReactionHashingGenericList.cc | 15 ++
.../HomogeneousNextReactionHashingGenericList.d | 39 ++++
.../HomogeneousNextReactionHashingGenericVector.cc | 14 ++
.../HomogeneousNextReactionHashingGenericVector.d | 39 ++++
.../HomogeneousNextReactionHashingVector.cc | 13 ++
src/solvers/HomogeneousNextReactionHashingVector.d | 39 ++++
src/solvers/HomogeneousNextReactionLinearSearch.cc | 9 +
src/solvers/HomogeneousNextReactionLinearSearch.d | 38 +++
.../HomogeneousNextReactionLinearSearchPointer.cc | 9 +
.../HomogeneousNextReactionLinearSearchPointer.d | 36 +++
.../HomogeneousNextReactionLinearSearchUnrolled.cc | 9 +
.../HomogeneousNextReactionLinearSearchUnrolled.d | 39 ++++
...HomogeneousNextReactionPartitionCostAdaptive.cc | 12 +
.../HomogeneousNextReactionPartitionCostAdaptive.d | 38 +++
.../HomogeneousNextReactionPartitionFixedSize.cc | 10 +
.../HomogeneousNextReactionPartitionFixedSize.d | 38 +++
...HomogeneousNextReactionPartitionPropensities.cc | 10 +
.../HomogeneousNextReactionPartitionPropensities.d | 38 +++
...HomogeneousNextReactionPartitionSizeAdaptive.cc | 12 +
.../HomogeneousNextReactionPartitionSizeAdaptive.d | 38 +++
src/solvers/HomogeneousOdeReaction.ipp | 215 +++++++++++++++++
src/solvers/HomogeneousOdeReactionFixedForward.cc | 8 +
src/solvers/HomogeneousOdeReactionFixedForward.d | 19 ++
src/solvers/HomogeneousOdeReactionFixedMidpoint.cc | 8 +
src/solvers/HomogeneousOdeReactionFixedMidpoint.d | 19 ++
.../HomogeneousOdeReactionFixedRungeKutta4.cc | 8 +
.../HomogeneousOdeReactionFixedRungeKutta4.d | 19 ++
...omogeneousOdeReactionFixedRungeKuttaCashKarp.cc | 8 +
...HomogeneousOdeReactionFixedRungeKuttaCashKarp.d | 20 ++
.../HomogeneousOdeReactionRungeKuttaCashKarp.cc | 7 +
.../HomogeneousOdeReactionRungeKuttaCashKarp.d | 19 ++
src/solvers/HomogeneousTauLeaping.ipp | 188 +++++++++++++++
src/solvers/HomogeneousTauLeapingFixedForward.cc | 10 +
src/solvers/HomogeneousTauLeapingFixedForward.d | 41 ++++
src/solvers/HomogeneousTauLeapingFixedMidpoint.cc | 10 +
src/solvers/HomogeneousTauLeapingFixedMidpoint.d | 41 ++++
.../HomogeneousTauLeapingFixedRungeKutta4.cc | 10 +
.../HomogeneousTauLeapingFixedRungeKutta4.d | 41 ++++
src/solvers/HomogeneousTauLeapingForward.cc | 9 +
src/solvers/HomogeneousTauLeapingForward.d | 41 ++++
.../HomogeneousTauLeapingForwardNoCorrection.cc | 9 +
.../HomogeneousTauLeapingForwardNoCorrection.d | 41 ++++
src/solvers/HomogeneousTauLeapingImplicit.ipp | 160 +++++++++++++
.../HomogeneousTauLeapingImplicitFixedEuler.cc | 7 +
.../HomogeneousTauLeapingImplicitFixedEuler.d | 97 ++++++++
src/solvers/HomogeneousTauLeapingMidpoint.cc | 9 +
src/solvers/HomogeneousTauLeapingMidpoint.d | 41 ++++
.../HomogeneousTauLeapingMidpointNoCorrection.cc | 9 +
.../HomogeneousTauLeapingMidpointNoCorrection.d | 41 ++++
src/solvers/HomogeneousTauLeapingRungeKutta4.cc | 9 +
src/solvers/HomogeneousTauLeapingRungeKutta4.d | 41 ++++
...HomogeneousTauLeapingRungeKutta4NoCorrection.cc | 9 +
.../HomogeneousTauLeapingRungeKutta4NoCorrection.d | 42 ++++
src/solvers/HomogeneousTauLeapingSal.ipp | 171 ++++++++++++++
src/solvers/HomogeneousTauLeapingSalFixedLinear.cc | 7 +
src/solvers/HomogeneousTauLeapingSalFixedLinear.d | 42 ++++
src/solvers/HomogeneousTauLeapingSalLinear.cc | 5 +
src/solvers/HomogeneousTauLeapingSalLinear.d | 42 ++++
src/solvers/HomogeneousTrajectoryTreeFull.cc | 190 +++++++++++++++
src/solvers/HomogeneousTrajectoryTreeFull.d | 31 +++
...ogeneousHistogramsSteadyStateDirectTimeSteps.cc | 165 +++++++++++++
.../InhomogeneousHistogramsTransientDirect.cc | 159 +++++++++++++
.../InhomogeneousOdeReactionRungeKuttaCashKarp.cc | 165 +++++++++++++
.../InhomogeneousTimeSeriesAllReactionsDirect.cc | 179 ++++++++++++++
.../InhomogeneousTimeSeriesUniformDirect.cc | 171 ++++++++++++++
src/solvers/Makefile | 66 ++++++
src/solvers/Makefile.compilers | 150 ++++++++++++
src/solvers/Propensities.h | 112 +++++++++
src/solvers/SConstruct | 15 ++
src/solvers/env.py | 54 +++++
src/solvers/input.ipp | 108 +++++++++
src/solvers/msvs.py | 37 +++
src/solvers/vc10vars32.bat | 123 ++++++++++
src/solvers/vcvars32.bat | 1 +
162 files changed, 8339 insertions(+), 50 deletions(-)
create mode 100644 src/solvers/HomogeneousDirect.ipp
create mode 100644 src/solvers/HomogeneousDirect2DSearch.cc
create mode 100644 src/solvers/HomogeneousDirect2DSearch.d
create mode 100644 src/solvers/HomogeneousDirect2DSearchBubbleSort.cc
create mode 100644 src/solvers/HomogeneousDirect2DSearchBubbleSort.d
create mode 100644 src/solvers/HomogeneousDirect2DSearchSorted.cc
create mode 100644 src/solvers/HomogeneousDirect2DSearchSorted.d
create mode 100644 src/solvers/HomogeneousDirectAllReactions.ipp
create mode 100644 src/solvers/HomogeneousDirectAllReactions2DSearch.cc
create mode 100644 src/solvers/HomogeneousDirectAllReactions2DSearch.d
create mode 100644 src/solvers/HomogeneousDirectBinarySearch.cc
create mode 100644 src/solvers/HomogeneousDirectBinarySearch.d
create mode 100644 src/solvers/HomogeneousDirectBinarySearchRecursiveCdf.cc
create mode 100644 src/solvers/HomogeneousDirectBinarySearchRecursiveCdf.d
create mode 100644 src/solvers/HomogeneousDirectBinarySearchSorted.cc
create mode 100644 src/solvers/HomogeneousDirectBinarySearchSorted.d
create mode 100644 src/solvers/HomogeneousDirectCompositionRejection.cc
create mode 100644 src/solvers/HomogeneousDirectCompositionRejection.d
create mode 100644 src/solvers/HomogeneousDirectLinearSearch.cc
create mode 100644 src/solvers/HomogeneousDirectLinearSearch.d
create mode 100644 src/solvers/HomogeneousDirectLinearSearchBubbleSort.cc
create mode 100644 src/solvers/HomogeneousDirectLinearSearchBubbleSort.d
create mode 100644 src/solvers/HomogeneousDirectLinearSearchDelayedUpdate.cc
create mode 100644 src/solvers/HomogeneousDirectLinearSearchDelayedUpdate.d
create mode 100644 src/solvers/HomogeneousDirectLinearSearchSorted.cc
create mode 100644 src/solvers/HomogeneousDirectLinearSearchSorted.d
create mode 100644 src/solvers/HomogeneousDirectRejectionBinsSplitting.cc
create mode 100644 src/solvers/HomogeneousDirectRejectionBinsSplitting.d
create mode 100644 src/solvers/HomogeneousFirstReaction.cc
create mode 100644 src/solvers/HomogeneousFirstReaction.d
create mode 100644 src/solvers/HomogeneousFirstReaction.ipp
create mode 100644 src/solvers/HomogeneousFirstReactionAbsoluteTime.cc
create mode 100644 src/solvers/HomogeneousFirstReactionAbsoluteTime.d
create mode 100644 src/solvers/HomogeneousFirstReactionInfluence.cc
create mode 100644 src/solvers/HomogeneousFirstReactionInfluence.d
create mode 100644 src/solvers/HomogeneousHistogramFinalHypoexponentialDirect.ipp
create mode 100644 src/solvers/HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc
create mode 100644 src/solvers/HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d
create mode 100644 src/solvers/HomogeneousHistogramsAverage.cc
create mode 100644 src/solvers/HomogeneousHistogramsAverage.d
create mode 100644 src/solvers/HomogeneousHistogramsAverage.ipp
create mode 100644 src/solvers/HomogeneousHistogramsAverageAps.cc
create mode 100644 src/solvers/HomogeneousHistogramsAverageAps.d
create mode 100644 src/solvers/HomogeneousHistogramsAverageAps.ipp
create mode 100644 src/solvers/HomogeneousHistogramsAverageElapsedTime.cc
create mode 100644 src/solvers/HomogeneousHistogramsAverageElapsedTime.d
create mode 100644 src/solvers/HomogeneousHistogramsAverageElapsedTime.ipp
create mode 100644 src/solvers/HomogeneousHistogramsDirect.ipp
create mode 100644 src/solvers/HomogeneousHistogramsDirect2DSearch.cc
create mode 100644 src/solvers/HomogeneousHistogramsDirect2DSearch.d
create mode 100644 src/solvers/HomogeneousHistogramsDirectTree.cc
create mode 100644 src/solvers/HomogeneousHistogramsDirectTree.d
create mode 100644 src/solvers/HomogeneousHistogramsDirectTree.ipp
create mode 100644 src/solvers/HomogeneousHistogramsMultiTimeDirect.ipp
create mode 100644 src/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch.cc
create mode 100644 src/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch.d
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirect.ipp
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLast.cc
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLast.d
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLimit.d
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeNormalApproximation.d
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeaping.ipp
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingForward.cc
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingForward.d
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingMidpoint.cc
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingMidpoint.d
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingRungeKutta4.cc
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingRungeKutta4.d
create mode 100644 src/solvers/HomogeneousNextReaction.ipp
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapGibsonBruck.cc
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapGibsonBruck.d
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPair.cc
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPair.d
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPointer.cc
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPointer.d
create mode 100644 src/solvers/HomogeneousNextReactionHashing.cc
create mode 100644 src/solvers/HomogeneousNextReactionHashing.d
create mode 100644 src/solvers/HomogeneousNextReactionHashingGenericList.cc
create mode 100644 src/solvers/HomogeneousNextReactionHashingGenericList.d
create mode 100644 src/solvers/HomogeneousNextReactionHashingGenericVector.cc
create mode 100644 src/solvers/HomogeneousNextReactionHashingGenericVector.d
create mode 100644 src/solvers/HomogeneousNextReactionHashingVector.cc
create mode 100644 src/solvers/HomogeneousNextReactionHashingVector.d
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearch.cc
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearch.d
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearchPointer.cc
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearchPointer.d
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearchUnrolled.cc
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearchUnrolled.d
create mode 100644 src/solvers/HomogeneousNextReactionPartitionCostAdaptive.cc
create mode 100644 src/solvers/HomogeneousNextReactionPartitionCostAdaptive.d
create mode 100644 src/solvers/HomogeneousNextReactionPartitionFixedSize.cc
create mode 100644 src/solvers/HomogeneousNextReactionPartitionFixedSize.d
create mode 100644 src/solvers/HomogeneousNextReactionPartitionPropensities.cc
create mode 100644 src/solvers/HomogeneousNextReactionPartitionPropensities.d
create mode 100644 src/solvers/HomogeneousNextReactionPartitionSizeAdaptive.cc
create mode 100644 src/solvers/HomogeneousNextReactionPartitionSizeAdaptive.d
create mode 100644 src/solvers/HomogeneousOdeReaction.ipp
create mode 100644 src/solvers/HomogeneousOdeReactionFixedForward.cc
create mode 100644 src/solvers/HomogeneousOdeReactionFixedForward.d
create mode 100644 src/solvers/HomogeneousOdeReactionFixedMidpoint.cc
create mode 100644 src/solvers/HomogeneousOdeReactionFixedMidpoint.d
create mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKutta4.cc
create mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKutta4.d
create mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKuttaCashKarp.cc
create mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKuttaCashKarp.d
create mode 100644 src/solvers/HomogeneousOdeReactionRungeKuttaCashKarp.cc
create mode 100644 src/solvers/HomogeneousOdeReactionRungeKuttaCashKarp.d
create mode 100644 src/solvers/HomogeneousTauLeaping.ipp
create mode 100644 src/solvers/HomogeneousTauLeapingFixedForward.cc
create mode 100644 src/solvers/HomogeneousTauLeapingFixedForward.d
create mode 100644 src/solvers/HomogeneousTauLeapingFixedMidpoint.cc
create mode 100644 src/solvers/HomogeneousTauLeapingFixedMidpoint.d
create mode 100644 src/solvers/HomogeneousTauLeapingFixedRungeKutta4.cc
create mode 100644 src/solvers/HomogeneousTauLeapingFixedRungeKutta4.d
create mode 100644 src/solvers/HomogeneousTauLeapingForward.cc
create mode 100644 src/solvers/HomogeneousTauLeapingForward.d
create mode 100644 src/solvers/HomogeneousTauLeapingForwardNoCorrection.cc
create mode 100644 src/solvers/HomogeneousTauLeapingForwardNoCorrection.d
create mode 100644 src/solvers/HomogeneousTauLeapingImplicit.ipp
create mode 100644 src/solvers/HomogeneousTauLeapingImplicitFixedEuler.cc
create mode 100644 src/solvers/HomogeneousTauLeapingImplicitFixedEuler.d
create mode 100644 src/solvers/HomogeneousTauLeapingMidpoint.cc
create mode 100644 src/solvers/HomogeneousTauLeapingMidpoint.d
create mode 100644 src/solvers/HomogeneousTauLeapingMidpointNoCorrection.cc
create mode 100644 src/solvers/HomogeneousTauLeapingMidpointNoCorrection.d
create mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4.cc
create mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4.d
create mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4NoCorrection.cc
create mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4NoCorrection.d
create mode 100644 src/solvers/HomogeneousTauLeapingSal.ipp
create mode 100644 src/solvers/HomogeneousTauLeapingSalFixedLinear.cc
create mode 100644 src/solvers/HomogeneousTauLeapingSalFixedLinear.d
create mode 100644 src/solvers/HomogeneousTauLeapingSalLinear.cc
create mode 100644 src/solvers/HomogeneousTauLeapingSalLinear.d
create mode 100644 src/solvers/HomogeneousTrajectoryTreeFull.cc
create mode 100644 src/solvers/HomogeneousTrajectoryTreeFull.d
create mode 100644 src/solvers/InhomogeneousHistogramsSteadyStateDirectTimeSteps.cc
create mode 100644 src/solvers/InhomogeneousHistogramsTransientDirect.cc
create mode 100644 src/solvers/InhomogeneousOdeReactionRungeKuttaCashKarp.cc
create mode 100644 src/solvers/InhomogeneousTimeSeriesAllReactionsDirect.cc
create mode 100644 src/solvers/InhomogeneousTimeSeriesUniformDirect.cc
create mode 100644 src/solvers/Makefile
create mode 100644 src/solvers/Makefile.compilers
create mode 100644 src/solvers/Propensities.h
create mode 100644 src/solvers/SConstruct
create mode 100644 src/solvers/env.py
create mode 100644 src/solvers/input.ipp
create mode 100644 src/solvers/msvs.py
create mode 100644 src/solvers/vc10vars32.bat
create mode 100644 src/solvers/vcvars32.bat
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/cain.git
More information about the debian-med-commit
mailing list