[med-svn] [cain] branch upstream updated (cb06927 -> b846fde)
Andreas Tille
tille at debian.org
Thu Dec 17 21:35:55 UTC 2015
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository cain.
from cb06927 Imported Upstream version 1.10
new b846fde Imported Upstream version 1.10+dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
src/solvers/HomogeneousDirect.ipp | 250 ++++++++++++++++++++
src/solvers/HomogeneousDirect2DSearch.cc | 11 +
src/solvers/HomogeneousDirect2DSearch.d | 39 ++++
src/solvers/HomogeneousDirect2DSearchBubbleSort.cc | 11 +
src/solvers/HomogeneousDirect2DSearchBubbleSort.d | 44 ++++
src/solvers/HomogeneousDirect2DSearchSorted.cc | 11 +
src/solvers/HomogeneousDirect2DSearchSorted.d | 44 ++++
src/solvers/HomogeneousDirectAllReactions.ipp | 257 +++++++++++++++++++++
.../HomogeneousDirectAllReactions2DSearch.cc | 11 +
.../HomogeneousDirectAllReactions2DSearch.d | 41 ++++
src/solvers/HomogeneousDirectBinarySearch.cc | 12 +
src/solvers/HomogeneousDirectBinarySearch.d | 34 +++
.../HomogeneousDirectBinarySearchRecursiveCdf.cc | 13 ++
.../HomogeneousDirectBinarySearchRecursiveCdf.d | 35 +++
src/solvers/HomogeneousDirectBinarySearchSorted.cc | 14 ++
src/solvers/HomogeneousDirectBinarySearchSorted.d | 41 ++++
.../HomogeneousDirectCompositionRejection.cc | 12 +
.../HomogeneousDirectCompositionRejection.d | 39 ++++
src/solvers/HomogeneousDirectLinearSearch.cc | 12 +
src/solvers/HomogeneousDirectLinearSearch.d | 39 ++++
.../HomogeneousDirectLinearSearchBubbleSort.cc | 12 +
.../HomogeneousDirectLinearSearchBubbleSort.d | 43 ++++
.../HomogeneousDirectLinearSearchDelayedUpdate.cc | 12 +
.../HomogeneousDirectLinearSearchDelayedUpdate.d | 39 ++++
src/solvers/HomogeneousDirectLinearSearchSorted.cc | 14 ++
src/solvers/HomogeneousDirectLinearSearchSorted.d | 45 ++++
.../HomogeneousDirectRejectionBinsSplitting.cc | 13 ++
.../HomogeneousDirectRejectionBinsSplitting.d | 45 ++++
src/solvers/HomogeneousFirstReaction.cc | 20 ++
src/solvers/HomogeneousFirstReaction.d | 29 +++
src/solvers/HomogeneousFirstReaction.ipp | 193 ++++++++++++++++
.../HomogeneousFirstReactionAbsoluteTime.cc | 22 ++
src/solvers/HomogeneousFirstReactionAbsoluteTime.d | 31 +++
src/solvers/HomogeneousFirstReactionInfluence.cc | 22 ++
src/solvers/HomogeneousFirstReactionInfluence.d | 31 +++
...ogeneousHistogramFinalHypoexponentialDirect.ipp | 193 ++++++++++++++++
...sHistogramFinalHypoexponentialDirect2DSearch.cc | 9 +
...usHistogramFinalHypoexponentialDirect2DSearch.d | 38 +++
src/solvers/HomogeneousHistogramsAverage.cc | 11 +
src/solvers/HomogeneousHistogramsAverage.d | 43 ++++
src/solvers/HomogeneousHistogramsAverage.ipp | 207 +++++++++++++++++
src/solvers/HomogeneousHistogramsAverageAps.cc | 11 +
src/solvers/HomogeneousHistogramsAverageAps.d | 44 ++++
src/solvers/HomogeneousHistogramsAverageAps.ipp | 207 +++++++++++++++++
.../HomogeneousHistogramsAverageElapsedTime.cc | 11 +
.../HomogeneousHistogramsAverageElapsedTime.d | 46 ++++
.../HomogeneousHistogramsAverageElapsedTime.ipp | 207 +++++++++++++++++
src/solvers/HomogeneousHistogramsDirect.ipp | 190 +++++++++++++++
src/solvers/HomogeneousHistogramsDirect2DSearch.cc | 11 +
src/solvers/HomogeneousHistogramsDirect2DSearch.d | 43 ++++
src/solvers/HomogeneousHistogramsDirectTree.cc | 11 +
src/solvers/HomogeneousHistogramsDirectTree.d | 42 ++++
src/solvers/HomogeneousHistogramsDirectTree.ipp | 197 ++++++++++++++++
.../HomogeneousHistogramsMultiTimeDirect.ipp | 195 ++++++++++++++++
...HomogeneousHistogramsMultiTimeDirect2DSearch.cc | 11 +
.../HomogeneousHistogramsMultiTimeDirect2DSearch.d | 44 ++++
.../HomogeneousHistogramsTransientDirect.ipp | 184 +++++++++++++++
...HistogramsTransientDirectTreeExponentialLast.cc | 25 ++
...sHistogramsTransientDirectTreeExponentialLast.d | 44 ++++
...istogramsTransientDirectTreeExponentialLimit.cc | 25 ++
...HistogramsTransientDirectTreeExponentialLimit.d | 44 ++++
...gramsTransientDirectTreeHypoexponentialLimit.cc | 26 +++
...ogramsTransientDirectTreeHypoexponentialLimit.d | 45 ++++
...ogramsTransientDirectTreeNormalApproximation.cc | 26 +++
...togramsTransientDirectTreeNormalApproximation.d | 45 ++++
src/solvers/HomogeneousHybridDirectTauLeaping.ipp | 181 +++++++++++++++
.../HomogeneousHybridDirectTauLeapingForward.cc | 7 +
.../HomogeneousHybridDirectTauLeapingForward.d | 51 ++++
.../HomogeneousHybridDirectTauLeapingMidpoint.cc | 7 +
.../HomogeneousHybridDirectTauLeapingMidpoint.d | 51 ++++
...HomogeneousHybridDirectTauLeapingRungeKutta4.cc | 7 +
.../HomogeneousHybridDirectTauLeapingRungeKutta4.d | 51 ++++
src/solvers/HomogeneousNextReaction.ipp | 246 ++++++++++++++++++++
...HomogeneousNextReactionBinaryHeapGibsonBruck.cc | 11 +
.../HomogeneousNextReactionBinaryHeapGibsonBruck.d | 37 +++
.../HomogeneousNextReactionBinaryHeapPair.cc | 9 +
.../HomogeneousNextReactionBinaryHeapPair.d | 37 +++
.../HomogeneousNextReactionBinaryHeapPointer.cc | 9 +
.../HomogeneousNextReactionBinaryHeapPointer.d | 37 +++
src/solvers/HomogeneousNextReactionHashing.cc | 11 +
src/solvers/HomogeneousNextReactionHashing.d | 37 +++
.../HomogeneousNextReactionHashingGenericList.cc | 15 ++
.../HomogeneousNextReactionHashingGenericList.d | 39 ++++
.../HomogeneousNextReactionHashingGenericVector.cc | 14 ++
.../HomogeneousNextReactionHashingGenericVector.d | 39 ++++
.../HomogeneousNextReactionHashingVector.cc | 13 ++
src/solvers/HomogeneousNextReactionHashingVector.d | 39 ++++
src/solvers/HomogeneousNextReactionLinearSearch.cc | 9 +
src/solvers/HomogeneousNextReactionLinearSearch.d | 38 +++
.../HomogeneousNextReactionLinearSearchPointer.cc | 9 +
.../HomogeneousNextReactionLinearSearchPointer.d | 36 +++
.../HomogeneousNextReactionLinearSearchUnrolled.cc | 9 +
.../HomogeneousNextReactionLinearSearchUnrolled.d | 39 ++++
...HomogeneousNextReactionPartitionCostAdaptive.cc | 12 +
.../HomogeneousNextReactionPartitionCostAdaptive.d | 38 +++
.../HomogeneousNextReactionPartitionFixedSize.cc | 10 +
.../HomogeneousNextReactionPartitionFixedSize.d | 38 +++
...HomogeneousNextReactionPartitionPropensities.cc | 10 +
.../HomogeneousNextReactionPartitionPropensities.d | 38 +++
...HomogeneousNextReactionPartitionSizeAdaptive.cc | 12 +
.../HomogeneousNextReactionPartitionSizeAdaptive.d | 38 +++
src/solvers/HomogeneousOdeReaction.ipp | 215 +++++++++++++++++
src/solvers/HomogeneousOdeReactionFixedForward.cc | 8 +
src/solvers/HomogeneousOdeReactionFixedForward.d | 19 ++
src/solvers/HomogeneousOdeReactionFixedMidpoint.cc | 8 +
src/solvers/HomogeneousOdeReactionFixedMidpoint.d | 19 ++
.../HomogeneousOdeReactionFixedRungeKutta4.cc | 8 +
.../HomogeneousOdeReactionFixedRungeKutta4.d | 19 ++
...omogeneousOdeReactionFixedRungeKuttaCashKarp.cc | 8 +
...HomogeneousOdeReactionFixedRungeKuttaCashKarp.d | 20 ++
.../HomogeneousOdeReactionRungeKuttaCashKarp.cc | 7 +
.../HomogeneousOdeReactionRungeKuttaCashKarp.d | 19 ++
src/solvers/HomogeneousTauLeaping.ipp | 188 +++++++++++++++
src/solvers/HomogeneousTauLeapingFixedForward.cc | 10 +
src/solvers/HomogeneousTauLeapingFixedForward.d | 41 ++++
src/solvers/HomogeneousTauLeapingFixedMidpoint.cc | 10 +
src/solvers/HomogeneousTauLeapingFixedMidpoint.d | 41 ++++
.../HomogeneousTauLeapingFixedRungeKutta4.cc | 10 +
.../HomogeneousTauLeapingFixedRungeKutta4.d | 41 ++++
src/solvers/HomogeneousTauLeapingForward.cc | 9 +
src/solvers/HomogeneousTauLeapingForward.d | 41 ++++
.../HomogeneousTauLeapingForwardNoCorrection.cc | 9 +
.../HomogeneousTauLeapingForwardNoCorrection.d | 41 ++++
src/solvers/HomogeneousTauLeapingImplicit.ipp | 160 +++++++++++++
.../HomogeneousTauLeapingImplicitFixedEuler.cc | 7 +
.../HomogeneousTauLeapingImplicitFixedEuler.d | 97 ++++++++
src/solvers/HomogeneousTauLeapingMidpoint.cc | 9 +
src/solvers/HomogeneousTauLeapingMidpoint.d | 41 ++++
.../HomogeneousTauLeapingMidpointNoCorrection.cc | 9 +
.../HomogeneousTauLeapingMidpointNoCorrection.d | 41 ++++
src/solvers/HomogeneousTauLeapingRungeKutta4.cc | 9 +
src/solvers/HomogeneousTauLeapingRungeKutta4.d | 41 ++++
...HomogeneousTauLeapingRungeKutta4NoCorrection.cc | 9 +
.../HomogeneousTauLeapingRungeKutta4NoCorrection.d | 42 ++++
src/solvers/HomogeneousTauLeapingSal.ipp | 171 ++++++++++++++
src/solvers/HomogeneousTauLeapingSalFixedLinear.cc | 7 +
src/solvers/HomogeneousTauLeapingSalFixedLinear.d | 42 ++++
src/solvers/HomogeneousTauLeapingSalLinear.cc | 5 +
src/solvers/HomogeneousTauLeapingSalLinear.d | 42 ++++
src/solvers/HomogeneousTrajectoryTreeFull.cc | 190 +++++++++++++++
src/solvers/HomogeneousTrajectoryTreeFull.d | 31 +++
...ogeneousHistogramsSteadyStateDirectTimeSteps.cc | 165 +++++++++++++
.../InhomogeneousHistogramsTransientDirect.cc | 159 +++++++++++++
.../InhomogeneousOdeReactionRungeKuttaCashKarp.cc | 165 +++++++++++++
.../InhomogeneousTimeSeriesAllReactionsDirect.cc | 179 ++++++++++++++
.../InhomogeneousTimeSeriesUniformDirect.cc | 171 ++++++++++++++
src/solvers/Makefile | 66 ++++++
src/solvers/Makefile.compilers | 150 ++++++++++++
src/solvers/Propensities.h | 112 +++++++++
src/solvers/SConstruct | 15 ++
src/solvers/env.py | 54 +++++
src/solvers/input.ipp | 108 +++++++++
src/solvers/msvs.py | 37 +++
src/solvers/vc10vars32.bat | 123 ++++++++++
src/solvers/vcvars32.bat | 1 +
155 files changed, 8309 insertions(+)
create mode 100644 src/solvers/HomogeneousDirect.ipp
create mode 100644 src/solvers/HomogeneousDirect2DSearch.cc
create mode 100644 src/solvers/HomogeneousDirect2DSearch.d
create mode 100644 src/solvers/HomogeneousDirect2DSearchBubbleSort.cc
create mode 100644 src/solvers/HomogeneousDirect2DSearchBubbleSort.d
create mode 100644 src/solvers/HomogeneousDirect2DSearchSorted.cc
create mode 100644 src/solvers/HomogeneousDirect2DSearchSorted.d
create mode 100644 src/solvers/HomogeneousDirectAllReactions.ipp
create mode 100644 src/solvers/HomogeneousDirectAllReactions2DSearch.cc
create mode 100644 src/solvers/HomogeneousDirectAllReactions2DSearch.d
create mode 100644 src/solvers/HomogeneousDirectBinarySearch.cc
create mode 100644 src/solvers/HomogeneousDirectBinarySearch.d
create mode 100644 src/solvers/HomogeneousDirectBinarySearchRecursiveCdf.cc
create mode 100644 src/solvers/HomogeneousDirectBinarySearchRecursiveCdf.d
create mode 100644 src/solvers/HomogeneousDirectBinarySearchSorted.cc
create mode 100644 src/solvers/HomogeneousDirectBinarySearchSorted.d
create mode 100644 src/solvers/HomogeneousDirectCompositionRejection.cc
create mode 100644 src/solvers/HomogeneousDirectCompositionRejection.d
create mode 100644 src/solvers/HomogeneousDirectLinearSearch.cc
create mode 100644 src/solvers/HomogeneousDirectLinearSearch.d
create mode 100644 src/solvers/HomogeneousDirectLinearSearchBubbleSort.cc
create mode 100644 src/solvers/HomogeneousDirectLinearSearchBubbleSort.d
create mode 100644 src/solvers/HomogeneousDirectLinearSearchDelayedUpdate.cc
create mode 100644 src/solvers/HomogeneousDirectLinearSearchDelayedUpdate.d
create mode 100644 src/solvers/HomogeneousDirectLinearSearchSorted.cc
create mode 100644 src/solvers/HomogeneousDirectLinearSearchSorted.d
create mode 100644 src/solvers/HomogeneousDirectRejectionBinsSplitting.cc
create mode 100644 src/solvers/HomogeneousDirectRejectionBinsSplitting.d
create mode 100644 src/solvers/HomogeneousFirstReaction.cc
create mode 100644 src/solvers/HomogeneousFirstReaction.d
create mode 100644 src/solvers/HomogeneousFirstReaction.ipp
create mode 100644 src/solvers/HomogeneousFirstReactionAbsoluteTime.cc
create mode 100644 src/solvers/HomogeneousFirstReactionAbsoluteTime.d
create mode 100644 src/solvers/HomogeneousFirstReactionInfluence.cc
create mode 100644 src/solvers/HomogeneousFirstReactionInfluence.d
create mode 100644 src/solvers/HomogeneousHistogramFinalHypoexponentialDirect.ipp
create mode 100644 src/solvers/HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc
create mode 100644 src/solvers/HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d
create mode 100644 src/solvers/HomogeneousHistogramsAverage.cc
create mode 100644 src/solvers/HomogeneousHistogramsAverage.d
create mode 100644 src/solvers/HomogeneousHistogramsAverage.ipp
create mode 100644 src/solvers/HomogeneousHistogramsAverageAps.cc
create mode 100644 src/solvers/HomogeneousHistogramsAverageAps.d
create mode 100644 src/solvers/HomogeneousHistogramsAverageAps.ipp
create mode 100644 src/solvers/HomogeneousHistogramsAverageElapsedTime.cc
create mode 100644 src/solvers/HomogeneousHistogramsAverageElapsedTime.d
create mode 100644 src/solvers/HomogeneousHistogramsAverageElapsedTime.ipp
create mode 100644 src/solvers/HomogeneousHistogramsDirect.ipp
create mode 100644 src/solvers/HomogeneousHistogramsDirect2DSearch.cc
create mode 100644 src/solvers/HomogeneousHistogramsDirect2DSearch.d
create mode 100644 src/solvers/HomogeneousHistogramsDirectTree.cc
create mode 100644 src/solvers/HomogeneousHistogramsDirectTree.d
create mode 100644 src/solvers/HomogeneousHistogramsDirectTree.ipp
create mode 100644 src/solvers/HomogeneousHistogramsMultiTimeDirect.ipp
create mode 100644 src/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch.cc
create mode 100644 src/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch.d
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirect.ipp
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLast.cc
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLast.d
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLimit.d
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc
create mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeNormalApproximation.d
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeaping.ipp
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingForward.cc
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingForward.d
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingMidpoint.cc
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingMidpoint.d
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingRungeKutta4.cc
create mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingRungeKutta4.d
create mode 100644 src/solvers/HomogeneousNextReaction.ipp
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapGibsonBruck.cc
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapGibsonBruck.d
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPair.cc
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPair.d
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPointer.cc
create mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPointer.d
create mode 100644 src/solvers/HomogeneousNextReactionHashing.cc
create mode 100644 src/solvers/HomogeneousNextReactionHashing.d
create mode 100644 src/solvers/HomogeneousNextReactionHashingGenericList.cc
create mode 100644 src/solvers/HomogeneousNextReactionHashingGenericList.d
create mode 100644 src/solvers/HomogeneousNextReactionHashingGenericVector.cc
create mode 100644 src/solvers/HomogeneousNextReactionHashingGenericVector.d
create mode 100644 src/solvers/HomogeneousNextReactionHashingVector.cc
create mode 100644 src/solvers/HomogeneousNextReactionHashingVector.d
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearch.cc
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearch.d
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearchPointer.cc
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearchPointer.d
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearchUnrolled.cc
create mode 100644 src/solvers/HomogeneousNextReactionLinearSearchUnrolled.d
create mode 100644 src/solvers/HomogeneousNextReactionPartitionCostAdaptive.cc
create mode 100644 src/solvers/HomogeneousNextReactionPartitionCostAdaptive.d
create mode 100644 src/solvers/HomogeneousNextReactionPartitionFixedSize.cc
create mode 100644 src/solvers/HomogeneousNextReactionPartitionFixedSize.d
create mode 100644 src/solvers/HomogeneousNextReactionPartitionPropensities.cc
create mode 100644 src/solvers/HomogeneousNextReactionPartitionPropensities.d
create mode 100644 src/solvers/HomogeneousNextReactionPartitionSizeAdaptive.cc
create mode 100644 src/solvers/HomogeneousNextReactionPartitionSizeAdaptive.d
create mode 100644 src/solvers/HomogeneousOdeReaction.ipp
create mode 100644 src/solvers/HomogeneousOdeReactionFixedForward.cc
create mode 100644 src/solvers/HomogeneousOdeReactionFixedForward.d
create mode 100644 src/solvers/HomogeneousOdeReactionFixedMidpoint.cc
create mode 100644 src/solvers/HomogeneousOdeReactionFixedMidpoint.d
create mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKutta4.cc
create mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKutta4.d
create mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKuttaCashKarp.cc
create mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKuttaCashKarp.d
create mode 100644 src/solvers/HomogeneousOdeReactionRungeKuttaCashKarp.cc
create mode 100644 src/solvers/HomogeneousOdeReactionRungeKuttaCashKarp.d
create mode 100644 src/solvers/HomogeneousTauLeaping.ipp
create mode 100644 src/solvers/HomogeneousTauLeapingFixedForward.cc
create mode 100644 src/solvers/HomogeneousTauLeapingFixedForward.d
create mode 100644 src/solvers/HomogeneousTauLeapingFixedMidpoint.cc
create mode 100644 src/solvers/HomogeneousTauLeapingFixedMidpoint.d
create mode 100644 src/solvers/HomogeneousTauLeapingFixedRungeKutta4.cc
create mode 100644 src/solvers/HomogeneousTauLeapingFixedRungeKutta4.d
create mode 100644 src/solvers/HomogeneousTauLeapingForward.cc
create mode 100644 src/solvers/HomogeneousTauLeapingForward.d
create mode 100644 src/solvers/HomogeneousTauLeapingForwardNoCorrection.cc
create mode 100644 src/solvers/HomogeneousTauLeapingForwardNoCorrection.d
create mode 100644 src/solvers/HomogeneousTauLeapingImplicit.ipp
create mode 100644 src/solvers/HomogeneousTauLeapingImplicitFixedEuler.cc
create mode 100644 src/solvers/HomogeneousTauLeapingImplicitFixedEuler.d
create mode 100644 src/solvers/HomogeneousTauLeapingMidpoint.cc
create mode 100644 src/solvers/HomogeneousTauLeapingMidpoint.d
create mode 100644 src/solvers/HomogeneousTauLeapingMidpointNoCorrection.cc
create mode 100644 src/solvers/HomogeneousTauLeapingMidpointNoCorrection.d
create mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4.cc
create mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4.d
create mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4NoCorrection.cc
create mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4NoCorrection.d
create mode 100644 src/solvers/HomogeneousTauLeapingSal.ipp
create mode 100644 src/solvers/HomogeneousTauLeapingSalFixedLinear.cc
create mode 100644 src/solvers/HomogeneousTauLeapingSalFixedLinear.d
create mode 100644 src/solvers/HomogeneousTauLeapingSalLinear.cc
create mode 100644 src/solvers/HomogeneousTauLeapingSalLinear.d
create mode 100644 src/solvers/HomogeneousTrajectoryTreeFull.cc
create mode 100644 src/solvers/HomogeneousTrajectoryTreeFull.d
create mode 100644 src/solvers/InhomogeneousHistogramsSteadyStateDirectTimeSteps.cc
create mode 100644 src/solvers/InhomogeneousHistogramsTransientDirect.cc
create mode 100644 src/solvers/InhomogeneousOdeReactionRungeKuttaCashKarp.cc
create mode 100644 src/solvers/InhomogeneousTimeSeriesAllReactionsDirect.cc
create mode 100644 src/solvers/InhomogeneousTimeSeriesUniformDirect.cc
create mode 100644 src/solvers/Makefile
create mode 100644 src/solvers/Makefile.compilers
create mode 100644 src/solvers/Propensities.h
create mode 100644 src/solvers/SConstruct
create mode 100644 src/solvers/env.py
create mode 100644 src/solvers/input.ipp
create mode 100644 src/solvers/msvs.py
create mode 100644 src/solvers/vc10vars32.bat
create mode 100644 src/solvers/vcvars32.bat
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