[med-svn] [falconkit] 02/05: Initial packaging

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif-guest pushed a commit to branch master
in repository falconkit.

commit d84a922dc4afa6daa23916b54783c22f24644fd2
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Thu Dec 17 22:18:44 2015 -0800

    Initial packaging
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 27 +++++++++++++++++++++++++++
 debian/copyright     | 40 ++++++++++++++++++++++++++++++++++++++++
 debian/docs          |  1 +
 debian/examples      |  1 +
 debian/rules         | 14 ++++++++++++++
 debian/source/format |  1 +
 debian/watch         |  3 +++
 9 files changed, 93 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..b73ba9e
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+falconkit (0.4.0-1) UNRELEASED; urgency=low
+
+  * Initial release 497af52 from Sep 7 (Closes: #nnnn)
+
+ -- Afif Elghraoui <afif at ghraoui.name>  Sun, 23 Aug 2015 01:00:12 -0700
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..6127c80
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,27 @@
+Source: falconkit
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <afif at ghraoui.name>
+Build-Depends:
+	debhelper (>= 9),
+	dh-python,
+	python-all-dev,
+	python-setuptools,
+	python-networkx,
+# Test-Depends:
+	python-nose,
+Standards-Version: 3.9.6
+Homepage: https://github.com/PacificBiosciences/FALCON
+Vcs-Git: git://anonscm.debian.org/debian-med/falconkit.git
+Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/falconkit.git
+
+Package: falconkit
+Architecture: any
+Depends:
+	${shlibs:Depends},
+	${misc:Depends},
+	${python:Depends},
+	python-pkg-resources,
+Description: fast aligning long reads for consensus and assembly
+ <insert long description, indented with spaces>
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..ba6bed0
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,40 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: falcon
+Upstream-Contact: devnet at pacificbiosciences.com
+Source: https://github.com/PacificBiosciences/FALCON
+
+Files: *
+Copyright: 2011-2015 Pacific Biosciences of California, Inc.
+License: PacBio-BSD-3-Clause
+
+Files: debian/*
+Copyright: 2015 Afif Elghraoui <afif at ghraoui.name>
+License: PacBio-BSD-3-Clause
+
+License: PacBio-BSD-3-Clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted (subject to the limitations in the
+ disclaimer below) provided that the following conditions are met:
+  * Redistributions of source code must retain the above copyright
+  notice, this list of conditions and the following disclaimer.
+  * Redistributions in binary form must reproduce the above
+  copyright notice, this list of conditions and the following
+  disclaimer in the documentation and/or other materials provided
+  with the distribution.
+  * Neither the name of Pacific Biosciences nor the names of its
+  contributors may be used to endorse or promote products derived
+  from this software without specific prior written permission.
+ NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
+ GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
+ BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
+ WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
+ USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+ OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+ SUCH DAMAGE.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..b43bf86
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1 @@
+README.md
diff --git a/debian/examples b/debian/examples
new file mode 100644
index 0000000..e39721e
--- /dev/null
+++ b/debian/examples
@@ -0,0 +1 @@
+examples/*
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..bca24e6
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,14 @@
+#!/usr/bin/make -f
+
+#DH_VERBOSE = 1
+
+include /usr/share/dpkg/default.mk
+
+export PYBUILD_NAME=falconkit
+
+%:
+	LC_ALL=C.UTF-8 dh $@ --with python2 --buildsystem=pybuild
+
+override_dh_auto_test:
+	PYBUILD_SYSTEM=custom \
+	PYBUILD_TEST_ARGS="nosetests -v test/" dh_auto_test
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..763d56c
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+# There are no formal upstream releases

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