[med-svn] [plink1.9] branch master updated (a698c34 -> 4cba1ae)

[Dylan Aïssi]

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bob.dybian-guest pushed a change to branch master
in repository plink1.9.

      from  a698c34   Upload to unstable
       new  597ab21   Imported Upstream version 1.90~b3.28-151216
       new  ae7a77c   Merge tag 'upstream/1.90_b3.28-151216'
       new  4cba1ae   Update d/changelog

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 Makefile         |    2 +-
 debian/changelog |    6 +
 plink.c          | 1020 ++++++++++++++++++---------------
 plink_assoc.c    |  742 +++---------------------
 plink_assoc.h    |   10 -
 plink_calc.c     |   33 +-
 plink_cluster.c  |   15 +-
 plink_cluster.h  |    2 +-
 plink_common.c   |  175 +++---
 plink_common.h   |   90 +--
 plink_data.c     | 1654 +++++++++++++++++++++++++++++++++---------------------
 plink_data.h     |    8 +-
 plink_dosage.c   |   90 +--
 plink_dosage.h   |    7 +-
 plink_family.c   | 1270 ++++++++++++++++++++++++++++++++++++++---
 plink_family.h   |    2 +-
 plink_filter.c   |  237 ++++----
 plink_filter.h   |   24 +-
 plink_glm.c      |  111 ++--
 plink_help.c     |   39 +-
 plink_lasso.c    |    1 +
 plink_ld.c       |  104 ++--
 plink_misc.c     |  244 +++++---
 plink_misc.h     |    1 +
 plink_perm.c     |  333 +++++++++++
 plink_perm.h     |  196 +++++++
 plink_set.c      |   85 ++-
 plink_set.h      |    4 +-
 28 files changed, 4192 insertions(+), 2313 deletions(-)
 create mode 100644 plink_perm.c
 create mode 100644 plink_perm.h

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