[med-svn] [bamtools] 01/01: add example files from SAM/BAM Format Specification

[Dominique Belhachemi]

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domibel pushed a commit to branch master
in repository bamtools.

commit 4217b65a3084f905d41126d9cee467fc1159c703
Author: Dominique Belhachemi <domibel at debian.org>
Date:   Sun Dec 20 17:48:47 2015 -0500

    add example files from SAM/BAM Format Specification
---
 debian/patches/add_sam_spec_example.patch |  13 +++++++++++++
 debian/patches/series                     |   1 +
 debian/source/include-binaries            |   1 +
 sam_spec_example.bam                      | Bin 0 -> 375 bytes
 4 files changed, 15 insertions(+)

diff --git a/debian/patches/add_sam_spec_example.patch b/debian/patches/add_sam_spec_example.patch
new file mode 100644
index 0000000..a6f010c
--- /dev/null
+++ b/debian/patches/add_sam_spec_example.patch
@@ -0,0 +1,13 @@
+Description: sam example from SAM/BAM Format Specification
+
+--- /dev/null
++++ bamtools-2.4.0+dfsg/sam_spec_example.sam
+@@ -0,0 +1,8 @@
++ at HD	VN:1.5	SO:coordinate
++ at SQ	SN:ref	LN:45
++r001	99	ref	7	30	8M2I4M1D3M	=	37	39	TTAGATAAAGGATACTG	*
++r002	0	ref	9	30	3S6M1P1I4M	*	0	0	AAAAGATAAGGATA	*
++r003	0	ref	9	30	5S6M	*	0	0	GCCTAAGCTAA	*	SA:Z:ref,29,-,6H5M,17,0;
++r004	0	ref	16	30	6M14N5M	*	0	0	ATAGCTTCAGC	*
++r003	2064	ref	29	17	6H5M	*	0	0	TAGGC	*	SA:Z:ref,9,+,5S6M,30,1;
++r001	147	ref	37	30	9M	=	7	-39	CAGCGGCAT	*	NM:i:1
diff --git a/debian/patches/series b/debian/patches/series
index 8e3563c..0961fb3 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -6,3 +6,4 @@
 0006-Fix-Doxyfile-input-source-path.patch
 0007-Big_Endian.patch
 0008_Cmake_Test.patch
+add_sam_spec_example.patch
diff --git a/debian/source/include-binaries b/debian/source/include-binaries
new file mode 100644
index 0000000..a701cd4
--- /dev/null
+++ b/debian/source/include-binaries
@@ -0,0 +1 @@
+sam_spec_example.bam
diff --git a/sam_spec_example.bam b/sam_spec_example.bam
new file mode 100644
index 0000000..7e460a1
Binary files /dev/null and b/sam_spec_example.bam differ

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