[med-svn] [bamtools] 01/02: move sam_spec_example.* into debian/

[Dominique Belhachemi]

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domibel pushed a commit to branch master
in repository bamtools.

commit 800ce5c0649732b5e7f2997af44f9f5278a65158
Author: Dominique Belhachemi <domibel at debian.org>
Date:   Sun Dec 20 18:01:22 2015 -0500

    move sam_spec_example.* into debian/
---
 debian/patches/add_sam_spec_example.patch           |  13 -------------
 debian/patches/series                               |   1 -
 sam_spec_example.bam => debian/sam_spec_example.bam | Bin
 debian/sam_spec_example.sam                         |   8 ++++++++
 debian/source/include-binaries                      |   2 +-
 5 files changed, 9 insertions(+), 15 deletions(-)

diff --git a/debian/patches/add_sam_spec_example.patch b/debian/patches/add_sam_spec_example.patch
deleted file mode 100644
index a6f010c..0000000
--- a/debian/patches/add_sam_spec_example.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-Description: sam example from SAM/BAM Format Specification
-
---- /dev/null
-+++ bamtools-2.4.0+dfsg/sam_spec_example.sam
-@@ -0,0 +1,8 @@
-+ at HD	VN:1.5	SO:coordinate
-+ at SQ	SN:ref	LN:45
-+r001	99	ref	7	30	8M2I4M1D3M	=	37	39	TTAGATAAAGGATACTG	*
-+r002	0	ref	9	30	3S6M1P1I4M	*	0	0	AAAAGATAAGGATA	*
-+r003	0	ref	9	30	5S6M	*	0	0	GCCTAAGCTAA	*	SA:Z:ref,29,-,6H5M,17,0;
-+r004	0	ref	16	30	6M14N5M	*	0	0	ATAGCTTCAGC	*
-+r003	2064	ref	29	17	6H5M	*	0	0	TAGGC	*	SA:Z:ref,9,+,5S6M,30,1;
-+r001	147	ref	37	30	9M	=	7	-39	CAGCGGCAT	*	NM:i:1
diff --git a/debian/patches/series b/debian/patches/series
index 0961fb3..8e3563c 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -6,4 +6,3 @@
 0006-Fix-Doxyfile-input-source-path.patch
 0007-Big_Endian.patch
 0008_Cmake_Test.patch
-add_sam_spec_example.patch
diff --git a/sam_spec_example.bam b/debian/sam_spec_example.bam
similarity index 100%
rename from sam_spec_example.bam
rename to debian/sam_spec_example.bam
diff --git a/debian/sam_spec_example.sam b/debian/sam_spec_example.sam
new file mode 100644
index 0000000..01490f5
--- /dev/null
+++ b/debian/sam_spec_example.sam
@@ -0,0 +1,8 @@
+ at HD	VN:1.5	SO:coordinate
+ at SQ	SN:ref	LN:45
+r001	99	ref	7	30	8M2I4M1D3M	=	37	39	TTAGATAAAGGATACTG	*
+r002	0	ref	9	30	3S6M1P1I4M	*	0	0	AAAAGATAAGGATA	*
+r003	0	ref	9	30	5S6M	*	0	0	GCCTAAGCTAA	*	SA:Z:ref,29,-,6H5M,17,0;
+r004	0	ref	16	30	6M14N5M	*	0	0	ATAGCTTCAGC	*
+r003	2064	ref	29	17	6H5M	*	0	0	TAGGC	*	SA:Z:ref,9,+,5S6M,30,1;
+r001	147	ref	37	30	9M	=	7	-39	CAGCGGCAT	*	NM:i:1
diff --git a/debian/source/include-binaries b/debian/source/include-binaries
index a701cd4..130b83c 100644
--- a/debian/source/include-binaries
+++ b/debian/source/include-binaries
@@ -1 +1 @@
-sam_spec_example.bam
+debian/sam_spec_example.bam

-- 
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