[med-svn] [falconkit] 01/06: Patch some scripts that were missing shebang lines

[Afif Elghraoui]

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afif-guest pushed a commit to branch master
in repository falconkit.

commit f9373f2b4439ceb39b936a2a25a508ab1b68fc8b
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sun Dec 20 22:20:41 2015 -0800

    Patch some scripts that were missing shebang lines
---
 debian/patches/add-shebang-lines.patch | 100 +++++++++++++++++++++++++++++++++
 debian/patches/series                  |   1 +
 2 files changed, 101 insertions(+)

diff --git a/debian/patches/add-shebang-lines.patch b/debian/patches/add-shebang-lines.patch
new file mode 100644
index 0000000..6bc86aa
--- /dev/null
+++ b/debian/patches/add-shebang-lines.patch
@@ -0,0 +1,100 @@
+Description: Add shebang lines to executable scripts
+Author: Afif Elghraoui <afif at ghraoui.name>
+Forwarded: no
+Last-Update: 2015-12-20
+--- falconkit.orig/src/py_scripts/fc_consensus.py
++++ falconkit/src/py_scripts/fc_consensus.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.consensus import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_ctg_link_analysis.py
++++ falconkit/src/py_scripts/fc_ctg_link_analysis.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.ctg_link_analysis import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_contig_annotate.py
++++ falconkit/src/py_scripts/fc_contig_annotate.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.contig_annotate import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_dedup_a_tigs.py
++++ falconkit/src/py_scripts/fc_dedup_a_tigs.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.dedup_a_tigs import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_graph_to_contig.py
++++ falconkit/src/py_scripts/fc_graph_to_contig.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.graph_to_contig import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_graph_to_utgs.py
++++ falconkit/src/py_scripts/fc_graph_to_utgs.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.graph_to_utgs import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_ovlp_stats.py
++++ falconkit/src/py_scripts/fc_ovlp_stats.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.ovlp_stats import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_ovlp_filter.py
++++ falconkit/src/py_scripts/fc_ovlp_filter.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.ovlp_filter import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_actg_coordinate.py
++++ falconkit/src/py_scripts/fc_actg_coordinate.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.actg_coordinate import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_ovlp_to_graph.py
++++ falconkit/src/py_scripts/fc_ovlp_to_graph.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.ovlp_to_graph import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts_v0.1/redis_graph.py
++++ falconkit/src/py_scripts_v0.1/redis_graph.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ import redis
+ import sys
+ from pbcore.io import FastaReader
+--- falconkit.orig/src/py_scripts_v0.1/overlapper.py
++++ falconkit/src/py_scripts_v0.1/overlapper.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++x
+ from falcon_kit import kup, falcon, DWA, get_consensus, get_alignment
+ from pbcore.io import FastaReader
+ import numpy as np
diff --git a/debian/patches/series b/debian/patches/series
index 145e692..4fcef0a 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 adjust-extension-name.patch
 python-multiarch.patch
+add-shebang-lines.patch

-- 
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