[med-svn] [roary] 01/01: remove whitespace hunks from patch

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository roary.

commit 36d01747b6734abbfcab687693a9fc1126fb982c
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Mon Dec 21 09:37:45 2015 +0000

    remove whitespace hunks from patch
---
 debian/patches/add_abstract.patch | 30 ------------------------------
 1 file changed, 30 deletions(-)

diff --git a/debian/patches/add_abstract.patch b/debian/patches/add_abstract.patch
index 8744707..0f53d61 100644
--- a/debian/patches/add_abstract.patch
+++ b/debian/patches/add_abstract.patch
@@ -12,33 +12,3 @@ Applied-Upstream: https://github.com/sanger-pathogens/Roary/pull/220
  
  =head1 SYNOPSIS
  
-@@ -52,7 +52,7 @@
- 
- sub _build__analyse_groups_obj {
- 	my ( $self ) = @_;
--	
-+
- 	return Bio::Roary::AnalyseGroups->new(
- 		fasta_files     => $self->fasta_files,
- 		groups_filename => $self->groupfile
-@@ -85,9 +85,9 @@
-   {
- 	my ( $filename, $directories, $suffix ) = fileparse( $fasta_file, qr/\.[^.]*/ );
-   	system('grep \> '.$fasta_file.'| sed  \'s/>//\' >'.$self->_gene_files_temp_dir_obj."/".$filename.$suffix ) ;
--	
-+
- 	my @genes = read_lines($self->_gene_files_temp_dir_obj."/".$filename.$suffix );
--	
-+
- 	for(my $i =0; $i< @genes; $i++)
- 	{
- 		for(my $offset = 1; $offset <= $self->_neighbourhood_size; $offset++)
-@@ -111,7 +111,7 @@
- 
- 	# iteratively
- 	for my $x ( 0..($self->iterations - 1) ){
--		my ( $in_groups, $out_groups ) = $self->_get_files_for_iteration( $x ); 
-+		my ( $in_groups, $out_groups ) = $self->_get_files_for_iteration( $x );
- 
- 		# read in groups, check paralogs and split
- 		my @newgroups;

-- 
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