[med-svn] [libqes] 02/05: Imported Upstream version 0.1.21
Kevin Murray
daube-guest at moszumanska.debian.org
Tue Dec 22 00:46:06 UTC 2015
This is an automated email from the git hooks/post-receive script.
daube-guest pushed a commit to branch master
in repository libqes.
commit 7a374bd55fd74ddafa4777f824fc5e65f0cdaf24
Author: Kevin Murray <spam at kdmurray.id.au>
Date: Tue Dec 22 10:59:28 2015 +1100
Imported Upstream version 0.1.21
---
cmake-modules/FindLIBQES.cmake | 36 +++++++++++++++++++++++++-----------
cmake-modules/GitSemVer.cmake | 22 ++++++++++++++++++++++
src/CMakeLists.txt | 1 +
src/qes.h | 16 ++++++++++++++++
src/qes_compat.c | 16 ++++++++++++++++
src/qes_compat.h | 16 ++++++++++++++++
src/qes_config.h.in | 16 ++++++++++++++++
src/qes_file.c | 16 ++++++++++++++++
src/qes_file.h | 16 ++++++++++++++++
src/qes_libgnu.c | 16 ++++++++++++++++
src/qes_libgnu.h | 16 ++++++++++++++++
src/qes_log.c | 16 ++++++++++++++++
src/qes_log.h | 16 ++++++++++++++++
src/qes_match.c | 16 ++++++++++++++++
src/qes_match.h | 16 ++++++++++++++++
src/qes_seq.c | 16 ++++++++++++++++
src/qes_seq.h | 16 ++++++++++++++++
src/qes_seqfile.c | 16 ++++++++++++++++
src/qes_seqfile.h | 16 ++++++++++++++++
src/qes_sequtil.c | 18 +++++++++++++++++-
src/qes_sequtil.h | 18 +++++++++++++++++-
src/qes_str.c | 16 ++++++++++++++++
src/qes_str.h | 16 ++++++++++++++++
src/qes_util.c | 16 ++++++++++++++++
src/qes_util.h | 16 ++++++++++++++++
test/benchmarks.c | 16 ++++++++++++++++
test/helpers.c | 16 ++++++++++++++++
test/helpers.h | 16 ++++++++++++++++
test/logdemo.c | 16 ++++++++++++++++
test/test.c | 16 ++++++++++++++++
test/test_file.c | 16 ++++++++++++++++
test/test_helpers.c | 16 ++++++++++++++++
test/test_log.c | 16 ++++++++++++++++
test/test_match.c | 16 ++++++++++++++++
test/test_seq.c | 16 ++++++++++++++++
test/test_seqfile.c | 16 ++++++++++++++++
test/test_sequtil.c | 16 ++++++++++++++++
test/test_util.c | 16 ++++++++++++++++
test/testdata.c | 16 ++++++++++++++++
test/testdata.h | 16 ++++++++++++++++
40 files changed, 642 insertions(+), 13 deletions(-)
diff --git a/cmake-modules/FindLIBQES.cmake b/cmake-modules/FindLIBQES.cmake
index 295217c..b62fd79 100644
--- a/cmake-modules/FindLIBQES.cmake
+++ b/cmake-modules/FindLIBQES.cmake
@@ -16,18 +16,32 @@
# An includer may set LIBQES_ROOT to a libqes installation root to tell
# this module where to look.
-#=============================================================================
+# =============================================================================
# Copyright 2014 Kevin Murray. Adapted from FindZLIB.cmake
-#
-# Distributed under the OSI-approved BSD License (the "License");
-# see accompanying file Copyright.txt for details.
-#
-# This software is distributed WITHOUT ANY WARRANTY; without even the
-# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the License for more information.
-#=============================================================================
-# (To distribute this file outside of CMake, substitute the full
-# License text for the above reference.)
+# Licensed under the 3-clause BSD license
+#
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions
+# are met:
+# 1. Redistributions of source code must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+# 2. Redistributions in binary form must reproduce the above copyright
+# notice, this list of conditions and the following disclaimer in the
+# documentation and/or other materials provided with the distribution.
+# 3. Neither the name of the University nor the names of its contributors
+# may be used to endorse or promote products derived from this software
+# without specific prior written permission.
+#
+# THIS SOFTWARE IS PROVIDED ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES,
+# INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
+# FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+# REGENTS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
set(_LIBQES_SEARCHES)
diff --git a/cmake-modules/GitSemVer.cmake b/cmake-modules/GitSemVer.cmake
index 290b8dd..c112796 100644
--- a/cmake-modules/GitSemVer.cmake
+++ b/cmake-modules/GitSemVer.cmake
@@ -1,3 +1,25 @@
+# Copyright (c) 2014-2015 Kevin Murray <spam at kdmurray.id.au>
+#
+# Permission is hereby granted, free of charge, to any person obtaining
+# a copy of this software and associated documentation files (the
+# "Software"), to deal in the Software without restriction, including
+# without limitation the rights to use, copy, modify, merge, publish,
+# distribute, sublicense, and/or sell copies of the Software, and to
+# permit persons to whom the Software is furnished to do so, subject to
+# the following conditions:
+#
+# The above copyright notice and this permission notice shall be
+# included in all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+# MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+# BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+# ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.
+
INCLUDE(GetGitRevisionDescription)
function(GetGitSemVer _var)
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 9e4e458..bc90804 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -5,6 +5,7 @@ ADD_LIBRARY(qes_static STATIC ${LIBQES_SOURCES})
SET_TARGET_PROPERTIES(qes_static PROPERTIES OUTPUT_NAME qes)
TARGET_LINK_LIBRARIES(qes_static ${LIBQES_DEPENDS_LIBS})
ADD_LIBRARY(qes SHARED ${LIBQES_SOURCES})
+SET_TARGET_PROPERTIES(qes PROPERTIES SONAME_VERSION 0 VERSION 0)
TARGET_LINK_LIBRARIES(qes ${LIBQES_DEPENDS_LIBS})
CONFIGURE_FILE(qes_config.h.in ${CMAKE_BINARY_DIR}/qes_config.h)
diff --git a/src/qes.h b/src/qes.h
index 89138f3..cb5e27e 100644
--- a/src/qes.h
+++ b/src/qes.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ==========================================================================
*
* Filename: qes.h
diff --git a/src/qes_compat.c b/src/qes_compat.c
index 7c5e1b2..4b6538c 100644
--- a/src/qes_compat.c
+++ b/src/qes_compat.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_compat.c
diff --git a/src/qes_compat.h b/src/qes_compat.h
index 33fc07b..b2abdc3 100644
--- a/src/qes_compat.h
+++ b/src/qes_compat.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_compat.h
diff --git a/src/qes_config.h.in b/src/qes_config.h.in
index a8dc840..fc08cd5 100644
--- a/src/qes_config.h.in
+++ b/src/qes_config.h.in
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_config.h.in
diff --git a/src/qes_file.c b/src/qes_file.c
index 220c167..1e14280 100644
--- a/src/qes_file.c
+++ b/src/qes_file.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_file.c
diff --git a/src/qes_file.h b/src/qes_file.h
index c9f17d0..341d39e 100644
--- a/src/qes_file.h
+++ b/src/qes_file.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_file.h
diff --git a/src/qes_libgnu.c b/src/qes_libgnu.c
index 4ac1497..1d6d88a 100644
--- a/src/qes_libgnu.c
+++ b/src/qes_libgnu.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_libgnu.c
diff --git a/src/qes_libgnu.h b/src/qes_libgnu.h
index d422cb3..17b7a78 100644
--- a/src/qes_libgnu.h
+++ b/src/qes_libgnu.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_libgnu.h
diff --git a/src/qes_log.c b/src/qes_log.c
index 6c19a1d..49a2103 100644
--- a/src/qes_log.c
+++ b/src/qes_log.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_log.c
diff --git a/src/qes_log.h b/src/qes_log.h
index a9bc070..7f96e2e 100644
--- a/src/qes_log.h
+++ b/src/qes_log.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_log.h
diff --git a/src/qes_match.c b/src/qes_match.c
index c4688a0..6874734 100644
--- a/src/qes_match.c
+++ b/src/qes_match.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_match.c
diff --git a/src/qes_match.h b/src/qes_match.h
index bfcb035..3098ea4 100644
--- a/src/qes_match.h
+++ b/src/qes_match.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_match.h
diff --git a/src/qes_seq.c b/src/qes_seq.c
index 95cc6d0..726a5df 100644
--- a/src/qes_seq.c
+++ b/src/qes_seq.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_seq.c
diff --git a/src/qes_seq.h b/src/qes_seq.h
index 84dc62a..5555368 100644
--- a/src/qes_seq.h
+++ b/src/qes_seq.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_seq.h
diff --git a/src/qes_seqfile.c b/src/qes_seqfile.c
index b876252..cccdd8d 100644
--- a/src/qes_seqfile.c
+++ b/src/qes_seqfile.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_seqfile.c
diff --git a/src/qes_seqfile.h b/src/qes_seqfile.h
index 9a49687..ce69ad0 100644
--- a/src/qes_seqfile.h
+++ b/src/qes_seqfile.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_seqfile.h
diff --git a/src/qes_sequtil.c b/src/qes_sequtil.c
index f8847d1..124d44b 100644
--- a/src/qes_sequtil.c
+++ b/src/qes_sequtil.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_sequtil.c
@@ -20,7 +36,7 @@
* ============================================================================
*/
-inline char
+inline int
qes_sequtil_translate_codon (const char *codon)
{
if (codon == NULL || strnlen(codon, 4) != 3) {
diff --git a/src/qes_sequtil.h b/src/qes_sequtil.h
index 11873f3..f3369b9 100644
--- a/src/qes_sequtil.h
+++ b/src/qes_sequtil.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_sequtil.h
@@ -16,7 +32,7 @@
#include <qes_util.h>
-extern char qes_sequtil_translate_codon(const char *codon);
+extern int qes_sequtil_translate_codon(const char *codon);
extern char *qes_sequtil_revcomp(const char *seq, size_t len);
extern void qes_sequtil_revcomp_inplace(char *seq, size_t len);
diff --git a/src/qes_str.c b/src/qes_str.c
index 2bf83cf..1483ef7 100644
--- a/src/qes_str.c
+++ b/src/qes_str.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_str.c
diff --git a/src/qes_str.h b/src/qes_str.h
index cbc2f2e..1b55370 100644
--- a/src/qes_str.h
+++ b/src/qes_str.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_str.h
diff --git a/src/qes_util.c b/src/qes_util.c
index bd14340..1586fac 100644
--- a/src/qes_util.c
+++ b/src/qes_util.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: qes_util.c
diff --git a/src/qes_util.h b/src/qes_util.h
index 961c581..30217bb 100644
--- a/src/qes_util.h
+++ b/src/qes_util.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
============================================================================
*
* Filename: qes_util.h
diff --git a/test/benchmarks.c b/test/benchmarks.c
index 1367ae5..ec36dc3 100644
--- a/test/benchmarks.c
+++ b/test/benchmarks.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: benchmarks.c
diff --git a/test/helpers.c b/test/helpers.c
index e374bf2..2cb8763 100644
--- a/test/helpers.c
+++ b/test/helpers.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: helpers.c
diff --git a/test/helpers.h b/test/helpers.h
index 111a060..1e9d21d 100644
--- a/test/helpers.h
+++ b/test/helpers.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: helpers.h
diff --git a/test/logdemo.c b/test/logdemo.c
index 82e13ae..b408ced 100644
--- a/test/logdemo.c
+++ b/test/logdemo.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: logdemo.c
diff --git a/test/test.c b/test/test.c
index 4252ef8..c3e1a3c 100644
--- a/test/test.c
+++ b/test/test.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test.c
diff --git a/test/test_file.c b/test/test_file.c
index b6a8058..97c604c 100644
--- a/test/test_file.c
+++ b/test/test_file.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test_file.c
diff --git a/test/test_helpers.c b/test/test_helpers.c
index 25d477d..f82b1a7 100644
--- a/test/test_helpers.c
+++ b/test/test_helpers.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test_helpers.c
diff --git a/test/test_log.c b/test/test_log.c
index 06d3b72..d4cfc96 100644
--- a/test/test_log.c
+++ b/test/test_log.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test_log.c
diff --git a/test/test_match.c b/test/test_match.c
index b287368..3ee0966 100644
--- a/test/test_match.c
+++ b/test/test_match.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test_match.c
diff --git a/test/test_seq.c b/test/test_seq.c
index 8e8c798..5494aa5 100644
--- a/test/test_seq.c
+++ b/test/test_seq.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test_seq.c
diff --git a/test/test_seqfile.c b/test/test_seqfile.c
index 3639d82..759275f 100644
--- a/test/test_seqfile.c
+++ b/test/test_seqfile.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test_seqfile.c
diff --git a/test/test_sequtil.c b/test/test_sequtil.c
index bcf4a43..5eabd1c 100644
--- a/test/test_sequtil.c
+++ b/test/test_sequtil.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test_sequtil.c
diff --git a/test/test_util.c b/test/test_util.c
index f4c6da7..da8a8c2 100644
--- a/test/test_util.c
+++ b/test/test_util.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: test_util.c
diff --git a/test/testdata.c b/test/testdata.c
index 4a66c85..298abdf 100644
--- a/test/testdata.c
+++ b/test/testdata.c
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: testdata.c
diff --git a/test/testdata.h b/test/testdata.h
index 48c374f..68ab280 100644
--- a/test/testdata.h
+++ b/test/testdata.h
@@ -1,4 +1,20 @@
/*
+ * Copyright 2015 Kevin Murray <spam at kdmurray.id.au>
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+/*
* ============================================================================
*
* Filename: testdata.h
--
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