[med-svn] [kmc] 02/03: extend spelling patch

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository kmc.

commit 3b40806351950d76bd326f05e2407b60a3c94214
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Tue Dec 22 22:07:01 2015 +0000

    extend spelling patch
---
 debian/patches/spelling | 137 ++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 137 insertions(+)

diff --git a/debian/patches/spelling b/debian/patches/spelling
index a53f247..0f05044 100644
--- a/debian/patches/spelling
+++ b/debian/patches/spelling
@@ -191,3 +191,140 @@ Applied-Upstream: https://github.com/marekkokot/KMC/pull/8
    the influence of irregular memory accesses. As the number of cache conflict misses
    is reduced better efficiency is reached.*/
  template<typename COUNTER_TYPE, typename INT_TYPE>
+--- a/kmc_tools/kmc2_db_reader.h
++++ b/kmc_tools/kmc2_db_reader.h
+@@ -869,7 +869,7 @@
+ 	my_fseek(kmc_pre, 4, SEEK_SET);
+ 	if (fread(LUTS, sizeof(uint64), lut_recs, kmc_pre) != lut_recs)
+ 	{
+-		std::cout << "Some error occured while reading LUTS from kmc2 prefix file \n";
++		std::cout << "Some error occurred while reading LUTS from kmc2 prefix file \n";
+ 		exit(1);
+ 	}
+ 	fclose(kmc_pre);
+@@ -1005,7 +1005,7 @@
+ //	my_fseek(kmc_suf, start, SEEK_SET);
+ //	if (fread(buf, 1, size, kmc_suf) != size)
+ //	{
+-//		std::cout << "Error: some error occured while reading " << desc.file_src << ".kmc_suf file\n";
++//		std::cout << "Error: some error occurred while reading " << desc.file_src << ".kmc_suf file\n";
+ //		exit(1);
+ //	}
+ //#ifdef ENABLE_LOGGER
+@@ -1336,7 +1336,7 @@
+ 		db_reader_counters_only = std::make_unique<CKMC2DbReaderCountersOnly<SIZE>>(header, desc);
+ 		break;
+ 	default: //should never be here
+-		std::cout << "Error: unknow open mode \n";
++		std::cout << "Error: unknown open mode \n";
+ 		exit(1);
+ 	}
+ }
+@@ -1395,4 +1395,4 @@
+ 
+ 
+ 
+-#endif
+\ No newline at end of file
++#endif
+--- a/kmc_tools/parameters_parser.cpp
++++ b/kmc_tools/parameters_parser.cpp
+@@ -140,7 +140,7 @@
+ 				config.filtering_params.input_file_type = CFilteringParams::file_type::fastq;
+ 				break;
+ 			default:
+-				cout << "Error: unknow parameter " << argv[pos - 1] << "\n";
++				cout << "Error: unknown parameter " << argv[pos - 1] << "\n";
+ 				exit(1);
+ 				break;
+ 			}
+@@ -207,7 +207,7 @@
+ 		}
+ 		else
+ 		{
+-			cout << "Warning: Unknow parameter for dump operation: " << argv[pos] << "\n";			
++			cout << "Warning: Unknown parameter for dump operation: " << argv[pos] << "\n";			
+ 		}
+ 		++pos;
+ 	}
+@@ -242,7 +242,7 @@
+ 		}
+ 		else
+ 		{
+-			cout << "Error: Unknow parameter: " << argv[pos];
++			cout << "Error: Unknown parameter: " << argv[pos];
+ 			exit(1);
+ 		}
+ 	}
+@@ -279,7 +279,7 @@
+ 		}
+ 		else
+ 		{
+-			cout << "Error: Unknow parameter: " << argv[pos];
++			cout << "Error: Unknown parameter: " << argv[pos];
+ 			exit(1);
+ 		}
+ 	}
+@@ -355,7 +355,7 @@
+ 	}
+ 	else
+ 	{
+-		cout << "Error: Unknow mode: " << argv[pos] << "\n";
++		cout << "Error: Unknown mode: " << argv[pos] << "\n";
+ 		Usage();
+ 		exit(1);
+ 	}
+@@ -533,4 +533,4 @@
+ 
+ 
+ 
+-// ***** EOF
+\ No newline at end of file
++// ***** EOF
+--- a/kmc_tools/parameters_parser.h
++++ b/kmc_tools/parameters_parser.h
+@@ -67,7 +67,7 @@
+ 			expression_root = new CCountersSubtractionNode<SIZE>;
+ 			break;
+ 		default:
+-			std::cout << "Error: unknow operation\n";
++			std::cout << "Error: unknown operation\n";
+ 			exit(1);
+ 		}
+ 		expression_root->AddLeftChild(left);
+@@ -98,7 +98,7 @@
+ 	}
+ 	else //should never be here
+ 	{
+-		std::cout << "Error: unknow operation\n";
++		std::cout << "Error: unknown operation\n";
+ #ifdef ENABLE_DEBUG
+ 		std::cout << __FUNCTION__ << " line: " << __LINE__ << "\n";
+ #endif
+@@ -108,4 +108,4 @@
+ #endif
+ 
+ 
+-// ***** EOF
+\ No newline at end of file
++// ***** EOF
+--- a/kmc_tools/parser.cpp
++++ b/kmc_tools/parser.cpp
+@@ -115,7 +115,7 @@
+ 					desc.cutoff_max = atoi(tmp.c_str() + 3);
+ 					continue;
+ 				}
+-				std::cout << "Error: Unknow parameter " << tmp << " for variable " << match[1] << ", line: "<< line_no <<"\n";
++				std::cout << "Error: Unknown parameter " << tmp << " for variable " << match[1] << ", line: "<< line_no <<"\n";
+ 				exit(1);
+ 			}
+ 
+@@ -160,7 +160,7 @@
+ 				config.output_desc.counter_max = atoi(tmp.c_str() + 3);
+ 				continue;
+ 			}
+-			std::cout << "Error: Unknow parameter " << tmp << " for variable " << tmp << ", line: " << line_no << "\n";
++			std::cout << "Error: Unknown parameter " << tmp << " for variable " << tmp << ", line: " << line_no << "\n";
+ 			exit(1);
+ 		}
+ 	}

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