[med-svn] r20873 - trunk/packages/python-cogent/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-12-23 14:39:32 +0000 (Wed, 23 Dec 2015)
New Revision: 20873

Modified:
   trunk/packages/python-cogent/trunk/debian/README.Debian
   trunk/packages/python-cogent/trunk/debian/changelog
   trunk/packages/python-cogent/trunk/debian/control
   trunk/packages/python-cogent/trunk/debian/rules
Log:
Some polishing and upload to unstable


Modified: trunk/packages/python-cogent/trunk/debian/README.Debian
===================================================================
--- trunk/packages/python-cogent/trunk/debian/README.Debian	2015-12-23 14:22:09 UTC (rev 20872)
+++ trunk/packages/python-cogent/trunk/debian/README.Debian	2015-12-23 14:39:32 UTC (rev 20873)
@@ -1,6 +1,16 @@
 PyCogent for Debian
 -------------------
 
+Note that not all unit tests are working.  At package build time only
+those tests are ran that do not fail.  The test results are reflected
+in the package dependencies:  If a test runs the tested tool is listed
+as Recommends - otherwise the tool is only Suggested (since not tested).
+
+There is some work left to fix the tests for all tools.  It is suspected
+that the tools just evolved and changed their interface.  Volunteers to
+adapt the tests are welcome.
+
+
 The following external tools are supported by PyCogent but not yet
 packaged for Debian:
 

Modified: trunk/packages/python-cogent/trunk/debian/changelog
===================================================================
--- trunk/packages/python-cogent/trunk/debian/changelog	2015-12-23 14:22:09 UTC (rev 20872)
+++ trunk/packages/python-cogent/trunk/debian/changelog	2015-12-23 14:39:32 UTC (rev 20873)
@@ -1,4 +1,4 @@
-python-cogent (1.5.3-4) UNRELEASED; urgency=medium
+python-cogent (1.5.3-4) unstable; urgency=medium
 
   * Build-Depends: bwa [any-amd64] and exclude bwa tests for other
     architectures
@@ -7,8 +7,9 @@
     failed tests excluded for the moment - more detailed investigation
     is needed
   * Drop debug package in favour of automatically generated one
+  * Add hint about tests to README.Debian.
 
- -- Andreas Tille <tille at debian.org>  Wed, 23 Dec 2015 14:23:42 +0100
+ -- Andreas Tille <tille at debian.org>  Wed, 23 Dec 2015 15:23:04 +0100
 
 python-cogent (1.5.3-3) unstable; urgency=medium
 

Modified: trunk/packages/python-cogent/trunk/debian/control
===================================================================
--- trunk/packages/python-cogent/trunk/debian/control	2015-12-23 14:22:09 UTC (rev 20872)
+++ trunk/packages/python-cogent/trunk/debian/control	2015-12-23 14:39:32 UTC (rev 20873)
@@ -44,7 +44,6 @@
           clustalw,
           infernal,
           mafft,
-          cd-hit,
           mothur,
           parsinsert,
           raxml,

Modified: trunk/packages/python-cogent/trunk/debian/rules
===================================================================
--- trunk/packages/python-cogent/trunk/debian/rules	2015-12-23 14:22:09 UTC (rev 20872)
+++ trunk/packages/python-cogent/trunk/debian/rules	2015-12-23 14:39:32 UTC (rev 20873)
@@ -67,6 +67,7 @@
 	BLASTMAT=/usr/share/ncbi/data/ $(CURDIR)/run_tests # --debug
 	# restore original tests file
 	mv tests/alltests.py~ tests/alltests.py
+	find tests -name "*.pyc" -delete
 
 get-orig-source:
 	mkdir -p ../tarballs