[med-svn] [transdecoder] 01/01: Make output reproducible.

[Charles Plessy]

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plessy pushed a commit to branch master
in repository transdecoder.

commit 5c9458f6155b5db21f2a2459d1c7a7f95986c5a5
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Dec 28 11:51:13 2015 +0900

    Make output reproducible.
    
    Author: Chris Lamb <lamby at debian.org>
    Bug-Debian: #809187
    Forwarded: https://github.com/TransDecoder/TransDecoder/pull/10
---
 debian/changelog                  |  4 ++++
 debian/patches/reproducible-build | 33 +++++++++++++++++++++++++++++++++
 debian/patches/series             |  1 +
 3 files changed, 38 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 8d4f979..7bb47d0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,7 +1,11 @@
 transdecoder (2.0.1+dfsg-2) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * Slightly enhanced short description
 
+  [ Charles Plessy ]
+  * Make output reproducible.
+
  -- Andreas Tille <tille at debian.org>  Mon, 09 Mar 2015 09:38:23 +0100
 
 transdecoder (2.0.1+dfsg-1) unstable; urgency=low
diff --git a/debian/patches/reproducible-build b/debian/patches/reproducible-build
new file mode 100644
index 0000000..f5af92c
--- /dev/null
+++ b/debian/patches/reproducible-build
@@ -0,0 +1,33 @@
+From b0525d572b8e8528ad19e919f6943d234d3281d1 Mon Sep 17 00:00:00 2001
+From: Charles Plessy <plessy at debian.org>
+Date: Mon, 28 Dec 2015 11:37:23 +0900
+Subject: [PATCH] Make output reproducible.
+
+Author: Chris Lamb <lamby at debian.org>
+Bug-Debian: #809187
+Forwarded: https://github.com/TransDecoder/TransDecoder/pull/10
+---
+ util/cufflinks_gtf_to_bed.pl | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/util/cufflinks_gtf_to_bed.pl b/util/cufflinks_gtf_to_bed.pl
+index 28547ba..8bbb4ed 100755
+--- a/util/cufflinks_gtf_to_bed.pl
++++ b/util/cufflinks_gtf_to_bed.pl
+@@ -68,11 +68,11 @@ main: {
+ 
+ 		my $genes_href = $genome_trans_to_coords{$scaff};
+ 
+-		foreach my $gene_id (keys %$genes_href) {
++		foreach my $gene_id (sort keys %$genes_href) {
+ 
+ 			my $trans_href = $genes_href->{$gene_id};
+ 
+-			foreach my $trans_id (keys %$trans_href) {
++			foreach my $trans_id (sort keys %$trans_href) {
+ 
+ 				my $coords_href = $trans_href->{$trans_id};
+ 
+-- 
+2.1.4
+
diff --git a/debian/patches/series b/debian/patches/series
index 69070c7..07cfd4f 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 cd-hit-est-rename
 fix-whatis
+reproducible-build

-- 
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