[med-svn] [jellyfish] 01/01: Enable Python and Perl bindings

[Andreas Tille]

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tille pushed a commit to branch master
in repository jellyfish.

commit a2ddec2f37f0e6b9f760ae33ee63289f2ef0d23a
Author: Andreas Tille <tille at debian.org>
Date:   Tue Dec 29 00:25:39 2015 +0100

    Enable Python and Perl bindings
---
 debian/changelog |  6 ++++++
 debian/control   | 49 +++++++++++++++++++++++++++++++++++++++++++++++--
 debian/rules     |  3 +++
 3 files changed, 56 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 43ab9a1..1af4381 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+jellyfish (2.2.4-3) UNRELEASED; urgency=medium
+
+  * Enable Python and Perl bindings
+
+ -- Andreas Tille <tille at debian.org>  Mon, 28 Dec 2015 22:42:59 +0100
+
 jellyfish (2.2.4-2) unstable; urgency=medium
 
   * enable build with c++11 and -Werror=deprecated-declarations compile
diff --git a/debian/control b/debian/control
index 1ef16ea..63e1bec 100644
--- a/debian/control
+++ b/debian/control
@@ -12,7 +12,9 @@ Build-Depends: debhelper (>= 9),
                bc,
                time,
                procps,
-               valgrind
+               valgrind,
+               swig,
+               python-dev
 Standards-Version: 3.9.6
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/jellyfish.git
 Vcs-Git: git://anonscm.debian.org/debian-med/jellyfish.git
@@ -85,6 +87,50 @@ Description: count k-mers in DNA sequences (development files of jellyfish)
  This package contains the development files (static library and
  header files)
 
+Package: python-jellyfish
+Architecture: all
+Section: python
+Depends: ${python:Depends},
+         ${misc:Depends}
+Description: count k-mers in DNA sequences (Python bindings of jellyfish)
+ JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
+ DNA. A k-mer is a substring of length k, and counting the occurrences
+ of all such substrings is a central step in many analyses of DNA
+ sequence. JELLYFISH can count k-mers using an order of magnitude less
+ memory and an order of magnitude faster than other k-mer counting
+ packages by using an efficient encoding of a hash table and by
+ exploiting the "compare-and-swap" CPU instruction to increase
+ parallelism.
+ .
+ JELLYFISH is a command-line program that reads FASTA and multi-FASTA
+ files containing DNA sequences. It outputs its k-mer counts in an
+ binary format, which can be translated into a human-readable text
+ format using the "jellyfish dump" command.
+ .
+ This package contains the Python bindings of jellyfish.
+
+Package: libjellyfish-perl
+Architecture: all
+Section: perl
+Depends: ${perl:Depends},
+         ${misc:Depends}
+Description: count k-mers in DNA sequences (Perl bindings of jellyfish)
+ JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
+ DNA. A k-mer is a substring of length k, and counting the occurrences
+ of all such substrings is a central step in many analyses of DNA
+ sequence. JELLYFISH can count k-mers using an order of magnitude less
+ memory and an order of magnitude faster than other k-mer counting
+ packages by using an efficient encoding of a hash table and by
+ exploiting the "compare-and-swap" CPU instruction to increase
+ parallelism.
+ .
+ JELLYFISH is a command-line program that reads FASTA and multi-FASTA
+ files containing DNA sequences. It outputs its k-mer counts in an
+ binary format, which can be translated into a human-readable text
+ format using the "jellyfish dump" command.
+ .
+ This package contains the Perl bindings of jellyfish.
+
 Package: jellyfish-examples
 Architecture: any-amd64
 Depends: jellyfish,
@@ -106,4 +152,3 @@ Description: count k-mers in DNA sequences (examples for testing)
  format using the "jellyfish dump" command.
  .
  This package contains examples to test the package
-
diff --git a/debian/rules b/debian/rules
index 6280e70..1d1f78a 100755
--- a/debian/rules
+++ b/debian/rules
@@ -17,6 +17,9 @@ override_dh_install:
 		    --movedev "debian/tmp/usr/include/$(DEBPKGNAME)*/$(DEBPKGNAME)/*.h" usr/include/$(DEBPKGNAME) \
 			debian/tmp/usr/lib/*/lib$(DEBPKGNAME)-*.so
 
+override_dh_auto_configure:
+	dh_auto_configure -- --enable-swig --enable-python-binding --enable-perl-binding
+
 override_dh_clean:
 	dh_clean
 	if [ -d debian/tmp_save_tests ] ; then \

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