[med-svn] [ngs-sdk] 01/01: Add Python bindinga

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository ngs-sdk.

commit 1409866df450a1101d8c36702a304fd647cd123e
Author: Andreas Tille <tille at debian.org>
Date:   Tue Dec 29 22:24:31 2015 +0100

    Add Python bindinga
---
 debian/control   | 46 +++++++++++++++++++++++++++++++++++++++++++++-
 debian/copyright |  2 +-
 debian/rules     | 17 ++++++++++++++++-
 3 files changed, 62 insertions(+), 3 deletions(-)

diff --git a/debian/control b/debian/control
index d65c1cc..576f241 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,10 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 9),
                d-shlibs,
-               python-markdown
+               python-markdown,
+               python-all-dev,
+               python3-all-dev,
+               dh-python
 Standards-Version: 3.9.6
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/ngs-sdk.git
 Vcs-Git: git://anonscm.debian.org/debian-med/ngs-sdk.git
@@ -49,3 +52,44 @@ Description: Next Generation Sequencing language Bindings (development)
  .
  This is the development package.
 
+Package: python-ngs-sdk
+Section: python
+Architecture: any
+Depends: ${python:Depends},
+         ${misc:Depends},
+         libngs-sdk1 (= ${binary:Version})
+Description: Next Generation Sequencing language Bindings (Python bindings)
+ NGS is a new, domain-specific API for accessing reads, alignments and
+ pileups produced from Next Generation Sequencing. The API itself is
+ independent from any particular back-end implementation, and supports
+ use of multiple back-ends simultaneously. It also provides a library for
+ building new back-end "engines". The engine for accessing SRA data is
+ contained within the sister repository ncbi-vdb.
+ .
+ The API is currently expressed in C++, Java and Python languages. The
+ design makes it possible to maintain a high degree of similarity between
+ the code in one language and code in another - especially between C++
+ and Java.
+ .
+ Python bindings.
+
+Package: python3-ngs-sdk
+Section: python3
+Architecture: any
+Depends: ${python3:Depends},
+         ${misc:Depends},
+         libngs-sdk1 (= ${binary:Version})
+Description: Next Generation Sequencing language Bindings (Python3 bindings)
+ NGS is a new, domain-specific API for accessing reads, alignments and
+ pileups produced from Next Generation Sequencing. The API itself is
+ independent from any particular back-end implementation, and supports
+ use of multiple back-ends simultaneously. It also provides a library for
+ building new back-end "engines". The engine for accessing SRA data is
+ contained within the sister repository ncbi-vdb.
+ .
+ The API is currently expressed in C++, Java and Python languages. The
+ design makes it possible to maintain a high degree of similarity between
+ the code in one language and code in another - especially between C++
+ and Java.
+ .
+ Python3 bindings.
diff --git a/debian/copyright b/debian/copyright
index ba9a9e8..97364c8 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -28,5 +28,5 @@ License: public_domain
 Files: debian/*
 Copyright: © 2015 Andreas Tille <tille at debian.org>
 License: GPL-3+
- The complete text of the GNU Public License can be found at
+ The complete text of the GNU General Public License can be found at
  /usr/share/common-licenses/GPL-3.
diff --git a/debian/rules b/debian/rules
index 0190d16..8d979f3 100755
--- a/debian/rules
+++ b/debian/rules
@@ -21,6 +21,9 @@ CPU := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
 BUILDTYPE := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
 SODIR := $(DEBPKGNAME)/$(BUILDTYPE)/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)
 
+build2vers := $(shell pyversions -sv)
+build3vers := $(shell py3versions -sv)
+
 %:
 	dh $@
 
@@ -53,4 +56,16 @@ override_dh_auto_install:
 		    --movedev "$(SODIR)/rel/ilib/*.a" usr/lib/$(BUILDTYPE) \
 		    $(SODIR)/rel/lib/libngs-sdk.so
 
-
+override_dh_install:
+	dh_install -ppython3-ngs-sdk
+	set -e && for i in $(build3vers); do \
+		cd ngs-python ; \
+		python$$i ./setup.py install --install-layout=deb --root ../debian/python3-ngs-sdk; \
+		cd .. ; \
+	done
+	dh_install -ppython-ngs-sdk
+	set -e && for i in $(build2vers); do \
+		cd ngs-python ; \
+		python$$i ./setup.py install --install-layout=deb --root ../debian/python-ngs-sdk; \
+		cd .. ; \
+	done

-- 
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