[med-svn] [mrbayes] branch master created (now 3761cb9)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository mrbayes.

        at  3761cb9   Moved to Git

This branch includes the following new commits:

       new  4258e57   Initial upload of Ubuntu's MrBayes with some yet untested patches towards a version with MPI..
       new  112090e   Further updates to get it finally compiled.
       new  1a46b63   Using debhelper, added mrbayes-mpi
       new  68f08cb   debian/rules clean-up
       new  c0563c4   Added myself to uploaders, some package polishing, will try to push the package foreward
       new  ffa9b13   README.Debian which is helpful for users instead of packagers
       new  2b37412   Added watch file
       new  8ca0a82   Machine readable copyright
       new  d1ba6f3   Some polishing, dropped useless libncurses dependency, provide better docs for MPI package
       new  f78ab22   Avoid linking against (most of) unneeded libraries
       new  adfd7f3   Removed bash dependency where I do not see any need for; added openmpi-common to mrbayes-mpi which seems to be a minimum requirement - however, the executable fails to start anyway and needs further investigation
       new  f426cba   For mb-mpi we need a wrapper executing orterun to call the executable
       new  4401a91   Finally uploaded to unstable
       new  fa9d072   Use mpi-default-bin instead of explicitely specifying openmpi
       new  9f1abe7   Added debug packages, released only to our PPA.
       new  357bf4f   Fixes dependencies.
       new  bf88eb3   My first crack at building new MrBayes.  Note there is a new build system so several changes to rules, otherwise should build much like before.
       new  7250e36   Improved build for MrBayes 3.2.0 with Beagle
       new  b1d4666   New upstream version for Debian; all pathces applied upstream
       new  c579891   Wait for upload of libhmsbeagle (closing #656609)
       new  439ed31   Upload to unstable
       new  1c4cea2   Create new tarball including source for PDF; remove PDF without source from upstream tarball
       new  b0f3fbb   Add "+dfsg" to upstream tarball
       new  b356eae   dversionmangle for renamed upstream target (+dfsg)
       new  cdeaa02   Added doc package and uploaded to unstable
       new  f1bfdec   Fixed DEP5 issues and verified using `cme fix dpkg-copyright`
       new  24ac0c0   Vcs fields, standards-version; upload to unstable
       new  0f60633   Add publication of the day
       new  2e9b01c   Corrected a typo in mrbayes-doc's description.
       new  f087c82   Incorporate as-needed patch
       new  e2cb511   Debhelper 9 to enable hardening; use xz compression because size of -dbg package increased drastically in this build (but even xz helped that much); upload to unstable
       new  eac3902   Added pre-dependency required to keep Ubuntu happy Debian should not notice
       new  ff1a9bc   Adapt get-orig-source to new SVN location to fetch sources of documentation files
       new  80824aa   Fist part of changing file permissions of debian/rules
       new  db2ec18   Reinject d/rules with executable bit set
       new  c74878b   New upstream version
       new  115eedc   cme fix dpkg-control        Remark: Pre-Depends: dpkg (>= 1.15.6~) can definitely be dropped        since even oldstable has a later dpkg.  Most probably a very old        lintian was used in the check for the previous version
       new  51f4ac5   Make sure we are properly linking against all libs
       new  52e7623   deactivate dh_auto_install since it tries to move files to /usr/local/bin
       new  6fca5d1   mrbayes-dbg: s/Conflicts/Breaks/
       new  5c0a0a3   Build-Depends: libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2) since libhmsbeagle-dev (= 2.1-1) is lacking the unversioned header dir
       new  233e463   Mass commit changes for staden done when traveling home from MiniDebConf Paris
       new  389b256   Move debian/upstream to debian/upstream/metadata
       new  68cdacc   Commit as uploaded
       new  a429856   New upstream version
       new  d220f3d   Fix get-orig-source target
       new  cb5ee99   Adapt get-orig-source script, cme fix dpkg-control
       new  0e8b7a6   New upstream version
       new  40dfc51   Refresh patches
       new  cb0498c   Upload to unstable
       new  087e562   Avoid hardcoded shared library dependency
       new  91b3892   Imported Upstream version 3.2.5+dfsg
       new  5b675f6   Merge tag 'upstream/3.2.5+dfsg'
       new  ff17cd4   Re-add debian/ dir
       new  3761cb9   Moved to Git

The 55 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


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