[med-svn] [pdb2pqr] 02/04: Merge tag 'upstream/2.1.0+dfsg'
Andreas Tille
tille at debian.org
Thu Dec 31 07:52:19 UTC 2015
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository pdb2pqr.
commit ba8d6d7e756dc26f4d88d2e3c7bf6624ee0280b8
Merge: b5c8aa5 4cd2a48
Author: Andreas Tille <tille at debian.org>
Date: Thu Dec 31 08:36:41 2015 +0100
Merge tag 'upstream/2.1.0+dfsg'
Upstream version 2.1.0+dfsg
3dmol/css/foundation.css | 6202 +
3dmol/css/pdb2pqr_3dmol.css | 542 +
3dmol/css/pure-min.css | 11 +
3dmol/css/toggles.css | 145 +
3dmol/css/ui_css.css | 10 +
3dmol/files/1fas.cube | 203213 ++++++++++++++++++
3dmol/images/rgb.png | Bin 0 -> 7523 bytes
3dmol/images/rwb.png | Bin 0 -> 6985 bytes
3dmol/js/3dmol.js.in | 420 +
3dmol/js/foundation.min.js | 6081 +
3dmol/js/foundation/foundation.abide.js | 340 +
3dmol/js/foundation/foundation.accordion.js | 67 +
3dmol/js/foundation/foundation.alert.js | 43 +
3dmol/js/foundation/foundation.clearing.js | 556 +
3dmol/js/foundation/foundation.dropdown.js | 448 +
3dmol/js/foundation/foundation.equalizer.js | 77 +
3dmol/js/foundation/foundation.interchange.js | 354 +
3dmol/js/foundation/foundation.joyride.js | 932 +
3dmol/js/foundation/foundation.js | 703 +
3dmol/js/foundation/foundation.magellan.js | 203 +
3dmol/js/foundation/foundation.offcanvas.js | 152 +
3dmol/js/foundation/foundation.orbit.js | 476 +
3dmol/js/foundation/foundation.reveal.js | 471 +
3dmol/js/foundation/foundation.slider.js | 263 +
3dmol/js/foundation/foundation.tab.js | 237 +
3dmol/js/foundation/foundation.tooltip.js | 307 +
3dmol/js/foundation/foundation.topbar.js | 452 +
3dmol/js/pitt_3Dmol.js | 31446 +++
3dmol/js/vendor/fastclick.js | 8 +
3dmol/js/vendor/jquery.cookie.js | 8 +
3dmol/js/vendor/jquery.js | 26 +
3dmol/js/vendor/modernizr.js | 8 +
3dmol/js/vendor/placeholder.js | 2 +
3dmol/js/visualize_html.js | 111 +
ChangeLog.md | 45 +-
INSTALL.md | 45 +-
README.md | 2 +-
SConscript-install.py | 2 +-
SConscript-main.py | 131 +-
ServerNotes.md | 72 +
apbs_cgi.py | 172 +-
build_config.py | 18 +-
doc/PDB2PQR Release SOP.md | 39 +-
doc/flowchart.dot | 239 +
doc/pydoc/copy.html | 17 +-
doc/pydoc/getopt.html | 10 +-
doc/pydoc/index.html | 2 +
doc/pydoc/math.html | 75 +-
doc/pydoc/os.html | 59 +-
doc/pydoc/pdb2pqr.html | 23 +-
doc/pydoc/re.html | 28 +-
doc/pydoc/src.aa.html | 94 +-
doc/pydoc/src.definitions.html | 22 +-
doc/pydoc/src.forcefield.html | 7 +-
doc/pydoc/src.hydrogens.html | 14 +-
doc/pydoc/src.inputgen.html | 17 +-
doc/pydoc/src.na.html | 722 +-
doc/pydoc/src.pdb.html | 1667 +-
doc/pydoc/src.protein.html | 12 +-
doc/pydoc/src.psize.html | 13 +-
doc/pydoc/src.quatfit.html | 7 +-
doc/pydoc/src.routines.html | 83 +-
doc/pydoc/src.server.html | 19 +-
doc/pydoc/src.structures.html | 31 +-
doc/pydoc/src.topology.html | 7 +-
doc/pydoc/src.utilities.html | 10 +-
doc/pydoc/string.html | 29 +-
doc/pydoc/sys.html | 79 +-
doc/pydoc/time.html | 29 +-
doc/pydoc/xml.sax.html | 9 +-
dx2cube.py | 177 +
fabfile.py | 247 +
fabfile_settings.py | 26 +
html/server.html.in | 25 +-
js | 329 +
main.py | 298 +-
main_cgi.py | 4 +-
pdb2pka/apbs.py | 5 +-
pdb2pka/graph_cut/__init__.py | 0
pdb2pka/graph_cut/create_titration_output.py | 11 +
pdb2pka/graph_cut/graph.py | 113 +
pdb2pka/graph_cut/protein_complex.py | 756 +
pdb2pka/graph_cut/titration_curve.py | 227 +
pdb2pka/graph_cut/uncertainty.py | 101 +
pdb2pka/graph_cut/utils.py | 97 +
pdb2pka/pKa_base.py | 13 +-
pdb2pka/pMC_mult.cpp | 20 +
pdb2pka/pka_help.py | 58 +-
pdb2pka/pka_routines.py | 693 +-
pdb2pqr.spec | 21 +-
pdb2pqr_config.xml | 69 +-
pka.py | 70 +-
propka30/Source/determinants.py | 15 +-
querystatus.py | 467 +-
site_scons/defaults.py | 2 +-
site_scons/site_init.py | 17 +-
site_scons/test_tools.py | 156 +-
src/aa.py | 151 +-
src/pdb.py | 655 +-
src/routines.py | 233 +-
tests/SConscript | 29 +-
tests/pdb2pka-test/{ => 1a1p}/1a1p.pdb | 0
.../titration_curves/ARG_A_11.csv | 201 +
.../titration_curves/ASP_A_6.csv | 201 +
.../titration_curves/CTR_A_13.csv | 201 +
.../titration_curves/HIS_A_10.csv | 201 +
.../titration_curves/HIS_A_9.csv | 201 +
.../titration_curves/NTR_A_1.csv | 201 +
tests/pdb2pka-test/1a1p/test-output-correct.pqr | 233 +
tests/pdb2pka-test/1etm/1etm.pdb | 1006 +
.../titration_curves/CTR_A_17.csv | 201 +
.../titration_curves/GLU_A_7.csv | 201 +
.../titration_curves/NTR_A_6.csv | 201 +
tests/pdb2pka-test/1etm/test-output-correct.pqr | 220 +
tests/pdb2pka-test/2m0w/2m0w.pdb | 6793 +
.../titration_curves/ASP_A_1.csv | 201 +
.../titration_curves/CTR_A_23.csv | 201 +
.../titration_curves/LYS_A_23.csv | 201 +
.../titration_curves/NTR_A_1.csv | 201 +
.../titration_curves/TYR_A_11.csv | 201 +
tests/pdb2pka-test/2m0w/test-output-correct.pqr | 341 +
tests/pdb2pka-test/2m8f/2m8f.pdb | 7087 +
.../titration_curves/ASP_A_17.csv | 201 +
.../titration_curves/ASP_A_24.csv | 201 +
.../titration_curves/ASP_A_9.csv | 201 +
.../titration_curves/CTR_A_24.csv | 201 +
.../titration_curves/HIS_A_19.csv | 201 +
.../titration_curves/NTR_A_1.csv | 201 +
.../titration_curves/TYR_A_15.csv | 201 +
tests/pdb2pka-test/2m8f/test-output-correct.pqr | 359 +
tests/pdb2pka-test/SConscript | 25 +
tests/pdb2pka-test/test-output-correct.pqr | 235 -
visualize.py | 64 +-
visualize.py => visualize2.py | 21 +-
134 files changed, 280973 insertions(+), 2881 deletions(-)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pdb2pqr.git
More information about the debian-med-commit
mailing list