[med-svn] [jaligner] 02/02: Add a manpage for our little wrapper script

[Timothy Booth]

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tbooth-guest pushed a commit to branch master
in repository jaligner.

commit 14872051eb7db5d918da40b82b31197d59e590ca
Author: Tim Booth <tbooth at ceh.ac.uk>
Date:   Sun Feb 1 19:10:01 2015 +0000

    Add a manpage for our little wrapper script
---
 debian/control       |   2 +-
 debian/jaligner.ronn |  16 ++++++++++++++++
 debian/manpages      |   1 +
 debian/rules         |   2 ++
 jaligner.jar         | Bin 164489 -> 0 bytes
 5 files changed, 20 insertions(+), 1 deletion(-)

diff --git a/debian/control b/debian/control
index e27e1cd..0d028de 100644
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,7 @@ Section: science
 Priority: extra
 Maintainer: Tim Booth <tbooth at ceh.ac.uk>
 Build-Depends: debhelper (>= 9), default-jdk, junit4, javahelper,
-               icedtea-netx-common
+               icedtea-netx-common, ruby-ronn
 Standards-Version: 3.9.5
 
 Package: jaligner
diff --git a/debian/jaligner.ronn b/debian/jaligner.ronn
new file mode 100644
index 0000000..abd1aa1
--- /dev/null
+++ b/debian/jaligner.ronn
@@ -0,0 +1,16 @@
+jaligner(1) -- Smith-Waterman algorithm with Gotoh's improvement
+==========
+
+## SYNOPSIS
+
+`jaligner` <s1> <s2> <matrix> <open> <extend>
+
+Or just type `jaligner` to see the GUI.
+
+## EXAMPLES
+
+`jaligner` p53_{human,mouse}.fasta BLOSUM62 10 0.5
+
+## Homepage
+
+ http://jaligner.sourceforge.net/
diff --git a/debian/manpages b/debian/manpages
new file mode 100644
index 0000000..0f65186
--- /dev/null
+++ b/debian/manpages
@@ -0,0 +1 @@
+debian/*.1
diff --git a/debian/rules b/debian/rules
index 01cb00c..90277d1 100755
--- a/debian/rules
+++ b/debian/rules
@@ -11,6 +11,7 @@ export CLASSPATH=/usr/share/icedtea-web/netx.jar
 
 override_dh_auto_build:
 	jh_build -J jaligner.jar src
+	ronn -r debian/jaligner.ronn
 
 override_dh_install:
 	dh_install src/jaligner /usr/share/jaligner
@@ -18,3 +19,4 @@ override_dh_install:
 
 override_dh_auto_clean:
 	rm -f jaligner.jar
+	rm -f debian/*.1
diff --git a/jaligner.jar b/jaligner.jar
deleted file mode 100644
index 25ec101..0000000
Binary files a/jaligner.jar and /dev/null differ

-- 
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