[med-svn] r18731 - trunk/packages/bowtie/trunk/debian/upstream

[Charles Plessy]

Author: plessy
Date: 2015-02-03 01:44:46 +0000 (Tue, 03 Feb 2015)
New Revision: 18731

Removed:
   trunk/packages/bowtie/trunk/debian/upstream/edam
Modified:
   trunk/packages/bowtie/trunk/debian/upstream/metadata
Log:
Temporarly revert r18504 to make a lighter debdiff for Testing update.


Deleted: trunk/packages/bowtie/trunk/debian/upstream/edam
===================================================================
--- trunk/packages/bowtie/trunk/debian/upstream/edam	2015-02-03 01:41:26 UTC (rev 18730)
+++ trunk/packages/bowtie/trunk/debian/upstream/edam	2015-02-03 01:44:46 UTC (rev 18731)
@@ -1,47 +0,0 @@
-topic: topic_0622 Genomics
-scope: summary
- function: operation_3212 Genome indexing (Burrows-Wheeler)
- function: operation_0292 Sequence alignment generation
- input: data_2975 Nucleic acid sequence (raw)
- input: format_1929 FASTA
- input: format_1930 FASTQ
- output: data_1383 Sequence alignment (nucleic acid)
- output: format_2573 SAM
-scope: bowtie-build
- function: operation_3212 Genome indexing (Burrows-Wheeler)
- input: data_2975 Nucleic acid sequence (raw)
- input: format_1929 FASTA
- output: data_3210 Genome index
- output: ??? Bowtie index format EBWT
- output: ??? Bowtie long index format EBTWL
-scope: bowtie-inspect
- function: operation_1813 Sequence retrieval
- function: operation_0304 Metadata retrieval
- function: operation_0228 Data index analysis
- input: data_3210 Genome index
- input: ??? Bowtie index format EBWT
- input: ??? Bowtie long index format EBTWL
- output: data_2975 Nucleic acid sequence (raw)
- output: format_1929 FASTA
- output: format_1964 plain text format (unformatted)
-scope: bowtie
- function: operation_0350 Sequence database search (by sequence using word-based methods)
- function: operation_0292 Sequence alignment generation
- input: data_3210 Genome index
- input: data_2975 Nucleic acid sequence (raw)
- input: format_1964 plain text format (unformatted)
- input: format_1929 FASTA
- input: format_1930 FASTQ
- output: data_1383 Sequence alignment (nucleic acid)
- output: data_0867 Sequence alignment report
- output: format_2573 SAM
- output: ??? Bowtie alignment report format
-
-topic: topic_0622 Genomics
-function: operation_3212 Genome indexing (Burrows-Wheeler)
-function: operation_0292 Sequence alignment generation
-input: data_2975 Nucleic acid sequence (raw)
-input: format_1929 FASTA
-input: format_1930 FASTQ
-output: data_1383 Sequence alignment (nucleic acid)
-output: format_2573 SAM

Modified: trunk/packages/bowtie/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/bowtie/trunk/debian/upstream/metadata	2015-02-03 01:41:26 UTC (rev 18730)
+++ trunk/packages/bowtie/trunk/debian/upstream/metadata	2015-02-03 01:44:46 UTC (rev 18731)
@@ -1,5 +1,5 @@
 Reference:
- author: Ben Langmead and Cole Trapnell and Mihai Pop and Steven L Salzberg
+ author: Ben Langmead and Cole Trapnell and Mihai Pop and Steven L Salzberg 
  title: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
  journal: Genome Biology
  volume: 10