[med-svn] [khmer] 03/03: run tests

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a commit to branch master
in repository khmer.

commit bf0321df209d8032d1ed7bb55edc8fc735c2fcf6
Author: Michael R. Crusoe <mcrusoe at msu.edu>
Date:   Mon Feb 9 10:30:29 2015 -0500

    run tests
---
 debian/README.test         | 5 +++++
 debian/control             | 2 +-
 debian/docs                | 2 ++
 debian/rules               | 4 ++++
 debian/tests/run-unit-test | 6 ++++--
 5 files changed, 16 insertions(+), 3 deletions(-)

diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..e95961c
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,5 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+You can run the upstream unit tests by executing the script run-unit-test.
+
diff --git a/debian/control b/debian/control
index bacf509..6a5c52f 100644
--- a/debian/control
+++ b/debian/control
@@ -9,7 +9,7 @@ Build-Depends: python-screed,
                dh-python,
                python2.7,
                python (>= 2.7),
-               python | python-all | python-dev | python-all-dev,
+               python-all-dev,
                python-setuptools (>= 3.3),
                zlib1g-dev,
                libbz2-dev,
diff --git a/debian/docs b/debian/docs
index ca14925..46a4240 100644
--- a/debian/docs
+++ b/debian/docs
@@ -3,3 +3,5 @@ CITATION
 README.rst
 CONTRIBUTING.md
 TODO
+debian/README.test
+debian/tests/run-unit-test
diff --git a/debian/rules b/debian/rules
index b011547..ea9e664 100755
--- a/debian/rules
+++ b/debian/rules
@@ -13,6 +13,10 @@ override_dh_auto_build:
 		./setup.py build_sphinx
 	ronn -r --manual=khmer --organization='Michigan State University' debian/khmer.1.ronn
 
+override_dh_auto_test:
+	PYBUILD_SYSTEM=custom \
+	PYBUILD_TEST_ARGS="cd {build_dir}; ln -s {build_dir}/../../../scripts khmer/; PYTHONPATH={build_dir} {interpreter} -m nose --attr '!known_failing,!jenkins'; rm khmer/scripts" dh_auto_test
+
 override_dh_auto_clean:
 	dh_auto_clean
 	rm -f khmer/*.so
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
index 865402e..a82f74c 100644
--- a/debian/tests/run-unit-test
+++ b/debian/tests/run-unit-test
@@ -4,5 +4,7 @@ pkg=khmer
 if [ "$ADTTMP" = "" ] ; then
   ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi
-cd /usr/lib/python2.7/dist-packages/khmer/tests
-python2.7 -m unittest discover -v
+
+cp -rs /usr/lib/python2.7/dist-packages/khmer .
+ln /usr/lib/khmer/bin khmer/scripts
+PYTHONPATH=$PWD python2.7 -m nose --attr '!known_failing,!jenkins'

-- 
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