[med-svn] r18762 - trunk/packages/python-miso/trunk/debian
Andreas Tille
tille at moszumanska.debian.org
Thu Feb 12 10:48:32 UTC 2015
Author: tille
Date: 2015-02-12 10:48:31 +0000 (Thu, 12 Feb 2015)
New Revision: 18762
Removed:
trunk/packages/python-miso/trunk/debian/README.Debian
trunk/packages/python-miso/trunk/debian/miso.doc-base.EX
Modified:
trunk/packages/python-miso/trunk/debian/changelog
trunk/packages/python-miso/trunk/debian/control
trunk/packages/python-miso/trunk/debian/copyright
trunk/packages/python-miso/trunk/debian/rules
Log:
Polishing build system and build-depends
Deleted: trunk/packages/python-miso/trunk/debian/README.Debian
===================================================================
--- trunk/packages/python-miso/trunk/debian/README.Debian 2015-02-12 10:05:20 UTC (rev 18761)
+++ trunk/packages/python-miso/trunk/debian/README.Debian 2015-02-12 10:48:31 UTC (rev 18762)
@@ -1,6 +0,0 @@
-miso for Debian
----------------
-
-Please consider adopting this package.
-
- -- Steffen Moeller <moeller at debian.org> Tue, 10 Feb 2015 17:55:01 +0100
Modified: trunk/packages/python-miso/trunk/debian/changelog
===================================================================
--- trunk/packages/python-miso/trunk/debian/changelog 2015-02-12 10:05:20 UTC (rev 18761)
+++ trunk/packages/python-miso/trunk/debian/changelog 2015-02-12 10:48:31 UTC (rev 18762)
@@ -1,5 +1,5 @@
-miso (0.5.2-1) unstable; urgency=low
+python-miso (0.5.2-1) UNRELEASED; urgency=low
* Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
- -- Steffen Moeller <moeller at debian.org> Tue, 10 Feb 2015 17:55:01 +0100
+ -- Andreas Tille <tille at debian.org> Tue, 10 Feb 2015 17:55:01 +0100
Modified: trunk/packages/python-miso/trunk/debian/control
===================================================================
--- trunk/packages/python-miso/trunk/debian/control 2015-02-12 10:05:20 UTC (rev 18761)
+++ trunk/packages/python-miso/trunk/debian/control 2015-02-12 10:48:31 UTC (rev 18762)
@@ -1,22 +1,26 @@
Source: python-miso
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller at debian.org>,
Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 9~), dh-python, python-all (>= 2.6.6-3~), python-setuptools,
- dpkg-dev (>= 1.16.1~)
-#, python3-all, python3-setuptools
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9~),
+ dh-python,
+ python-all-dev,
+ python-setuptools,
+ python-pysam,
+ python-scipy
Standards-Version: 3.9.6
-Homepage: http://genes.mit.edu/burgelab/miso/
-X-Python-Version: >= 2.6
-#X-Python3-Version: >= 3.2
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/python-miso/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/python-miso/trunk/
+Homepage: http://genes.mit.edu/burgelab/miso/
+X-Python-Version: >= 2.6
Package: python-miso
Architecture: any
-Depends: ${shlibs:Depends}, ${python:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+ ${python:Depends},
+ ${misc:Depends}
Description: Mixture of Isoforms model for RNA-Seq isoform quantitation
MISO (Mixture of Isoforms) is a probabilistic framework that quantitates
the expression level of alternatively spliced genes from RNA-Seq
@@ -29,19 +33,3 @@
abundances of the underlying set of alternative mRNA isoforms. Confidence
intervals over estimates can be obtained, which quantify the reliability
of the estimates.
-
-#Package: python3-miso
-#Architecture: any
-#Depends: ${shlibs:Depends}, ${python3:Depends}, ${misc:Depends}
-#Description: Mixture of Isoforms model for RNA-Seq isoform quantitation
-# MISO (Mixture of Isoforms) is a probabilistic framework that quantitates
-# the expression level of alternatively spliced genes from RNA-Seq
-# data, and identifies differentially regulated isoforms or exons across
-# samples. By modeling the generative process by which reads are produced
-# from isoforms in RNA-Seq, the MISO model uses Bayesian inference to
-# compute the probability that a read originated from a particular isoform.
-# .
-# MISO uses the inferred assignment of reads to isoforms to quantitate the
-# abundances of the underlying set of alternative mRNA isoforms. Confidence
-# intervals over estimates can be obtained, which quantify the reliability
-# of the estimates.
Modified: trunk/packages/python-miso/trunk/debian/copyright
===================================================================
--- trunk/packages/python-miso/trunk/debian/copyright 2015-02-12 10:05:20 UTC (rev 18761)
+++ trunk/packages/python-miso/trunk/debian/copyright 2015-02-12 10:48:31 UTC (rev 18762)
@@ -8,6 +8,7 @@
Files: debian/*
Copyright: 2015 Steffen Moeller <moeller at debian.org>
+ 2015 Andreas Tille <tille at debian.org>
License: GPL-2.0+
License: GPL-2.0+
Deleted: trunk/packages/python-miso/trunk/debian/miso.doc-base.EX
===================================================================
--- trunk/packages/python-miso/trunk/debian/miso.doc-base.EX 2015-02-12 10:05:20 UTC (rev 18761)
+++ trunk/packages/python-miso/trunk/debian/miso.doc-base.EX 2015-02-12 10:48:31 UTC (rev 18762)
@@ -1,20 +0,0 @@
-Document: miso
-Title: Debian miso Manual
-Author: <insert document author here>
-Abstract: This manual describes what miso is
- and how it can be used to
- manage online manuals on Debian systems.
-Section: unknown
-
-Format: debiandoc-sgml
-Files: /usr/share/doc/miso/miso.sgml.gz
-
-Format: postscript
-Files: /usr/share/doc/miso/miso.ps.gz
-
-Format: text
-Files: /usr/share/doc/miso/miso.text.gz
-
-Format: HTML
-Index: /usr/share/doc/miso/html/index.html
-Files: /usr/share/doc/miso/html/*.html
Modified: trunk/packages/python-miso/trunk/debian/rules
===================================================================
--- trunk/packages/python-miso/trunk/debian/rules 2015-02-12 10:05:20 UTC (rev 18761)
+++ trunk/packages/python-miso/trunk/debian/rules 2015-02-12 10:48:31 UTC (rev 18762)
@@ -1,23 +1,10 @@
#!/usr/bin/make -f
#DH_VERBOSE = 1
-DPKG_EXPORT_BUILDFLAGS = 1
-include /usr/share/dpkg/default.mk
+export PYBUILD_NAME=misopy
-# see FEATURE AREAS in dpkg-buildflags(1)
-export DEB_BUILD_MAINT_OPTIONS = hardening=+all
-
-# see ENVIRONMENT in dpkg-buildflags(1)
-# package maintainers to append CFLAGS
-#export DEB_CFLAGS_MAINT_APPEND = -Wall -pedantic
-# package maintainers to append LDFLAGS
-#export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed
-
-#export PYBUILD_NAME=misopy
-
%:
- dh $@
- #dh $@ --with python2,python3
+ dh $@ --with python2 --buildsystem=pybuild
override_dh_clean:
rm -rf tmp a.out
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