[med-svn] r18764 - in trunk/packages/python-miso/trunk/debian: . bin

[Andreas Tille]

Author: tille
Date: 2015-02-12 14:06:31 +0000 (Thu, 12 Feb 2015)
New Revision: 18764

Added:
   trunk/packages/python-miso/trunk/debian/bin/index_gff
   trunk/packages/python-miso/trunk/debian/bin/miso
Modified:
   trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
   trunk/packages/python-miso/trunk/debian/changelog
   trunk/packages/python-miso/trunk/debian/rules
Log:
Also try to eleminate non-critical errors in test suite


Added: trunk/packages/python-miso/trunk/debian/bin/index_gff
===================================================================
--- trunk/packages/python-miso/trunk/debian/bin/index_gff	                        (rev 0)
+++ trunk/packages/python-miso/trunk/debian/bin/index_gff	2015-02-12 14:06:31 UTC (rev 18764)
@@ -0,0 +1 @@
+link sam_to_bam
\ No newline at end of file


Property changes on: trunk/packages/python-miso/trunk/debian/bin/index_gff
___________________________________________________________________
Added: svn:special
   + *

Added: trunk/packages/python-miso/trunk/debian/bin/miso
===================================================================
--- trunk/packages/python-miso/trunk/debian/bin/miso	                        (rev 0)
+++ trunk/packages/python-miso/trunk/debian/bin/miso	2015-02-12 14:06:31 UTC (rev 18764)
@@ -0,0 +1 @@
+link sam_to_bam
\ No newline at end of file


Property changes on: trunk/packages/python-miso/trunk/debian/bin/miso
___________________________________________________________________
Added: svn:special
   + *

Modified: trunk/packages/python-miso/trunk/debian/bin/sam_to_bam
===================================================================
--- trunk/packages/python-miso/trunk/debian/bin/sam_to_bam	2015-02-12 13:16:14 UTC (rev 18763)
+++ trunk/packages/python-miso/trunk/debian/bin/sam_to_bam	2015-02-12 14:06:31 UTC (rev 18764)
@@ -1,2 +1,3 @@
 #!/bin/sh
-python misopy/sam_to_bam.py $@
+name=`basename $0`
+python misopy/${name}.py $@

Modified: trunk/packages/python-miso/trunk/debian/changelog
===================================================================
--- trunk/packages/python-miso/trunk/debian/changelog	2015-02-12 13:16:14 UTC (rev 18763)
+++ trunk/packages/python-miso/trunk/debian/changelog	2015-02-12 14:06:31 UTC (rev 18764)
@@ -1,5 +1,5 @@
 python-miso (0.5.2-1) UNRELEASED; urgency=low
 
-  * Initial release (Closes: #nnnn)  <nnnn is the bug number of your ITP>
+  * Initial release (Closes: #nnnn)
 
  -- Andreas Tille <tille at debian.org>  Tue, 10 Feb 2015 17:55:01 +0100

Modified: trunk/packages/python-miso/trunk/debian/rules
===================================================================
--- trunk/packages/python-miso/trunk/debian/rules	2015-02-12 13:16:14 UTC (rev 18763)
+++ trunk/packages/python-miso/trunk/debian/rules	2015-02-12 14:06:31 UTC (rev 18764)
@@ -7,10 +7,14 @@
 	dh $@ --with python2 --buildsystem=pybuild
 
 override_dh_auto_test:
-	
 	PATH=$(CURDIR)/debian/bin:$${PATH} \
 	PYBUILD_SYSTEM=custom \
-	PYBUILD_TEST_ARGS="ln -s ../../../../misopy/test-data {build_dir}/misopy && cd {build_dir} && PYTHONPATH={build_dir} python -m unittest discover -v" \
+	PYBUILD_TEST_ARGS="\
+		ln -s ../../../../misopy/test-data {build_dir}/misopy && \
+		mkdir -p {build_dir}/misopy/gff-events/mm9/genes && \
+		ln -s ../../../../../../../misopy/gff-events/mm9/genes/Atp2b1.mm9.gff {build_dir}/misopy/gff-events/mm9/genes && \
+		cd {build_dir} && \
+		PYTHONPATH={build_dir} python -m unittest discover -v" \
 	dh_auto_test --buildsystem=pybuild
 
 override_dh_clean: