[med-svn] [parafly] 02/02: initial Debianization
Michael Crusoe
misterc-guest at moszumanska.debian.org
Fri Feb 13 16:04:36 UTC 2015
This is an automated email from the git hooks/post-receive script.
misterc-guest pushed a commit to branch master
in repository parafly.
commit 6eb5a89a202a6635264d8ba037608ef1ae64e408
Author: Michael R. Crusoe <mcrusoe at msu.edu>
Date: Fri Feb 13 10:49:48 2015 -0500
initial Debianization
---
debian/autoreconf.after | 30 ++++++++++++++++++++++++++++++
debian/autoreconf.before | 29 +++++++++++++++++++++++++++++
debian/changelog | 5 +++++
debian/compat | 1 +
debian/control | 21 +++++++++++++++++++++
debian/copyright | 28 ++++++++++++++++++++++++++++
debian/createmanpages | 16 ++++++++++++++++
debian/rules | 23 +++++++++++++++++++++++
debian/source/format | 1 +
debian/upstream/metadata | 12 ++++++++++++
debian/watch | 5 +++++
11 files changed, 171 insertions(+)
diff --git a/debian/autoreconf.after b/debian/autoreconf.after
new file mode 100644
index 0000000..31d524e
--- /dev/null
+++ b/debian/autoreconf.after
@@ -0,0 +1,30 @@
+22f9432af5f5ec84c81f990269b19bb7 ./LICENSE
+7e4d98ad58944e04f542a713cb1c83cd ./Makefile
+7ce728e42b3b23fa41b0e81f7f2d11be ./Makefile.am
+d7010413d39066266e8d8f73c284c35d ./autom4te.cache/output.0
+d7010413d39066266e8d8f73c284c35d ./autom4te.cache/output.1
+8c2d2a0d3c62d58e47019fd2ba7f0a27 ./autom4te.cache/requests
+192ff8628e747327a0cf239d18330f80 ./autom4te.cache/traces.0
+1a06c2d9534ed64cbfe597edcab921b4 ./autom4te.cache/traces.1
+27eed31432ba015d53642d3bedfb8422 ./bin/ParaFly
+489b1da67c02868e4061fd6a0c4f7903 ./config.h
+d85c95f2736b99bb4d4b018ac502971d ./config.log
+138be6ba12aca11d4df3946ed41fe177 ./config.status
+9be1762ba3d59577f56204767c2ef30c ./configure
+a4a75bf595fe74789697dc6b540a74c5 ./configure.ac
+f841fd73af04077f534a5de8acb94575 ./src/.deps/ParaFly.Po
+aae6c2b885872fc6c54b360a52e5923e ./src/.deps/argProcessor.Po
+edce9a2c22d4243d783898f8cf8fd594 ./src/Makefile
+bb753eb0caff8da7ea245615ae8ec993 ./src/Makefile.am
+93f98cd0500034a07a120c92f196d653 ./src/ParaFly.cpp
+edd22530e6408d0c2a66bc19a3fa82df ./src/argProcessor.cpp
+665c78ac9f7d1cd446e51815c2297174 ./src/argProcessor.hpp
+2c95a4e2f9d69de842954fb7995cafb1 ./src/Makefile.in
+91023a1d58d69b4916a8609882d782a8 ./stamp-h1
+6c6ee54bc590334f5c67b8f4394b4a52 ./aclocal.m4
+ed5b4b4f12c9b633f765580db4ff32bc ./config.h.in~
+ed5b4b4f12c9b633f765580db4ff32bc ./config.h.in
+6e5fe73723cd40a28adc5b7b5650c8d1 ./install-sh
+1ad54e190e8322176a47a48621ad0887 ./missing
+c4e17cd8bfd603f8a0c152cdc202fcdf ./Makefile.in
+f4aafb270c2f983f35b365aad5fe8870 ./depcomp
diff --git a/debian/autoreconf.before b/debian/autoreconf.before
new file mode 100644
index 0000000..5afbb95
--- /dev/null
+++ b/debian/autoreconf.before
@@ -0,0 +1,29 @@
+22f9432af5f5ec84c81f990269b19bb7 ./LICENSE
+7e4d98ad58944e04f542a713cb1c83cd ./Makefile
+7ce728e42b3b23fa41b0e81f7f2d11be ./Makefile.am
+ec18cd5153b99bd9ad2a6e80d08189ca ./Makefile.in
+4642288884e732a0dd170ac23e4c0596 ./aclocal.m4
+3ca5022003546126204a4d352479c27d ./autom4te.cache/output.0
+3ca5022003546126204a4d352479c27d ./autom4te.cache/output.1
+1fea4a7f5be9b595f0651b1ceb652b10 ./autom4te.cache/requests
+0e7fa146a18acb709f6e76824f53e334 ./autom4te.cache/traces.0
+c7f6df699832ff0f89b051b92fd04dd1 ./autom4te.cache/traces.1
+27eed31432ba015d53642d3bedfb8422 ./bin/ParaFly
+489b1da67c02868e4061fd6a0c4f7903 ./config.h
+ed5b4b4f12c9b633f765580db4ff32bc ./config.h.in
+d85c95f2736b99bb4d4b018ac502971d ./config.log
+138be6ba12aca11d4df3946ed41fe177 ./config.status
+456832f7c5226a677e236d1321f15386 ./configure
+a4a75bf595fe74789697dc6b540a74c5 ./configure.ac
+2edbe869dfc213dbc78b76b47175f055 ./depcomp
+9d5ae975ae461be51dfd41d904c52af2 ./install-sh
+52cc47fe5f31e22f14f911caaf821429 ./missing
+f841fd73af04077f534a5de8acb94575 ./src/.deps/ParaFly.Po
+aae6c2b885872fc6c54b360a52e5923e ./src/.deps/argProcessor.Po
+edce9a2c22d4243d783898f8cf8fd594 ./src/Makefile
+bb753eb0caff8da7ea245615ae8ec993 ./src/Makefile.am
+367d655be2ae288eb7d99b0c24890867 ./src/Makefile.in
+93f98cd0500034a07a120c92f196d653 ./src/ParaFly.cpp
+edd22530e6408d0c2a66bc19a3fa82df ./src/argProcessor.cpp
+665c78ac9f7d1cd446e51815c2297174 ./src/argProcessor.hpp
+91023a1d58d69b4916a8609882d782a8 ./stamp-h1
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..a38a68c
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+parafly (0.0.2013.01.21-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #<bug>)
+
+ -- Michael R. Crusoe <mcrusoe at msu.edu> Fri, 13 Feb 2015 10:38:39 -0500
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..732df1e
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,21 @@
+Source: parafly
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Michael R. Crusoe <mcrusoe at msu.edu>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ autotools-dev
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/parafly.git
+Vcs-Git: git://anonscm.debian.org/debian-med/parafly.git
+Homepage: http://parafly.sourceforge.net
+
+Package: parafly
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Description: parallel command processing using OpenMP
+ ParaFly provides a simple mechanism for running a predefined list of unix
+ commands in parallel using multithreading. Failed processes are captured and
+ reported. Successfully executed processes are noted. If the process is rerun,
+ only those previously incompleted or failed processes will be executed.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..1096df5
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,28 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: ParaFly
+Source: http://sourceforge.net/projects/parafly/files/latest/download?source=files
+Files-Excluded: transdecoder_plugins
+
+Files: *
+Copyright: (c) 2011, The Broad Institute, Inc. All rights reserved.
+License: BSD-3-clause
+
+Files: debian/*
+Copyright: © 2015, Michigan State University
+License: BSD-3-clause
+
+License: BSD-3-clause
+ Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+ .
+ · Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+ .
+ · Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+ .
+ · Neither the name of the Broad Institute nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.**
+ .
+ THIS SOFTWARE IS PROVIDED BY THE BROAD INSTITUTE ''AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
+ THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BROAD INSTITUTE
+ BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES(INCLUDING, BUT NOT LIMITED TO,
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+ WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
+ EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/debian/createmanpages b/debian/createmanpages
new file mode 100755
index 0000000..febcd91
--- /dev/null
+++ b/debian/createmanpages
@@ -0,0 +1,16 @@
+#!/bin/sh
+MANDIR=debian
+mkdir -p $MANDIR
+
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
+
+help2man --no-info --no-discard-stderr --help-option=" " \
+ --name='<optional description of the program>' \
+ --version-string="$VERSION" <programname> > $MANDIR/<programname>.1
+
+cat <<EOT
+Please enhance the help2man output.
+The following web page might be helpful in doing so:
+ http://liw.fi/manpages/
+EOT
+
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..2730a9c
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+
+DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables you can
+# include /usr/share/cdbs/1/rules/buildvars.mk
+# and use what is set there. Any hint whether dh might set variables in
+# a similar manner are welcome.
+
+%:
+ dh $@ --with autotools_dev
+
+#get-orig-source:
+# . debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..d8b5812
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+ Author:
+ Title:
+ Journal:
+ Year:
+ Volume:
+ Number:
+ Pages:
+ DOI:
+ PMID:
+ URL:
+ eprint:
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..2b7bd27
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,5 @@
+version=3
+
+opts="uversionmangle=s/^/0.0./" \
+ http://sf.net/parafly/parafly-r(\d\d\d\d)-(\d\d)-(\d\d)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))
+
--
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