[med-svn] [trinityrnaseq] branch master updated (9166bf7 -> 5ef7baa)

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a change to branch master
in repository trinityrnaseq.

      from  9166bf7   We are excluding files so flag this by adding +dfsg to the version
       new  f044b70   parafly, transdecoder, and JUNG have been split out
       new  5ef7baa   switch to tbooth's package of jaligner

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/control                           |  9 ++-
 debian/copyright                         | 26 ++++++---
 debian/javabuild                         |  1 +
 debian/jlibs                             |  1 +
 debian/patches/series                    |  1 +
 debian/patches/update-paths              | 99 ++++++++++++++++++++++++++++++++
 debian/rules                             | 29 ++++------
 debian/test/control                      |  2 +-
 debian/test/{run-unit-test => run-tests} |  0
 debian/trinityrnaseq.docs                |  1 +
 debian/trinityrnaseq.install             |  4 +-
 debian/trinityrnaseq.manifest            |  2 +
 12 files changed, 144 insertions(+), 31 deletions(-)
 create mode 100644 debian/javabuild
 create mode 100644 debian/jlibs
 create mode 100644 debian/patches/update-paths
 rename debian/test/{run-unit-test => run-tests} (100%)
 create mode 100644 debian/trinityrnaseq.manifest

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/trinityrnaseq.git