[med-svn] r18785 - in trunk/packages/ncbi-blast+/trunk/debian: . patches

[Aaron M. Ucko]

Author: ucko
Date: 2015-02-17 03:38:41 +0000 (Tue, 17 Feb 2015)
New Revision: 18785

Added:
   trunk/packages/ncbi-blast+/trunk/debian/patches/allow_gcc5
Modified:
   trunk/packages/ncbi-blast+/trunk/debian/changelog
   trunk/packages/ncbi-blast+/trunk/debian/patches/series
Log:
d/patches/allow_gcc5 (new): Allow compilation with GCC 5, per upstream.
(Closes: #778021.)


Modified: trunk/packages/ncbi-blast+/trunk/debian/changelog
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/changelog	2015-02-17 03:29:35 UTC (rev 18784)
+++ trunk/packages/ncbi-blast+/trunk/debian/changelog	2015-02-17 03:38:41 UTC (rev 18785)
@@ -1,8 +1,10 @@
 ncbi-blast+ (2.2.30-2) UNRELEASED; urgency=medium
 
   * NOT YET RELEASED.
+  * d/patches/allow_gcc5 (new): Allow compilation with GCC 5, per upstream.
+    (Closes: #778021.)
 
- -- Aaron M. Ucko <ucko at debian.org>  Mon, 16 Feb 2015 22:29:29 -0500
+ -- Aaron M. Ucko <ucko at debian.org>  Mon, 16 Feb 2015 22:38:37 -0500
 
 ncbi-blast+ (2.2.30-1) experimental; urgency=medium
 

Added: trunk/packages/ncbi-blast+/trunk/debian/patches/allow_gcc5
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/patches/allow_gcc5	                        (rev 0)
+++ trunk/packages/ncbi-blast+/trunk/debian/patches/allow_gcc5	2015-02-17 03:38:41 UTC (rev 18785)
@@ -0,0 +1,47 @@
+Subject: allow compilation with GCC 5
+Description: Formally allow compilation with GCC 5, otherwise okay
+Author: Aaron M. Ucko <ucko at debian.org>
+Forwarded: yes
+Last-Updated: 2015-02-16
+--- a/c++/src/build-system/configure
++++ b/c++/src/build-system/configure
+@@ -5819,14 +5819,10 @@ ncbi_compiler_ver="0"
+ 
+ if test "$GCC" = "yes" ; then
+    compiler_ver="`$real_CXX -dumpversion 2>&1`"
+-   case "$compiler_ver" in
+-     2.95* | 2.96* | 3.* | 4.* )
+-       compiler="GCC"
+-       ncbi_compiler="GCC"
+-       ncbi_compiler_ver="$compiler_ver"
+-                 WithFeatures="$WithFeatures${WithFeaturesSep}GCC"; WithFeaturesSep=" "
+-       ;;
+-   esac
++   compiler="GCC"
++   ncbi_compiler="GCC"
++   ncbi_compiler_ver="$compiler_ver"
++             WithFeatures="$WithFeatures${WithFeaturesSep}GCC"; WithFeaturesSep=" "
+ elif test "$KCC" = "yes" ; then
+    compiler_ver="$kcc_ver"
+    compiler="KCC"
+--- a/c++/src/build-system/configure.ac
++++ b/c++/src/build-system/configure.ac
+@@ -800,14 +800,10 @@ ncbi_compiler_ver="0"
+ 
+ if test "$GCC" = "yes" ; then
+    compiler_ver="`$real_CXX -dumpversion 2>&1`"
+-   case "$compiler_ver" in
+-     2.95* | 2.96* | 3.* | 4.* )
+-       compiler="GCC"
+-       ncbi_compiler="GCC"
+-       ncbi_compiler_ver="$compiler_ver"
+-       NCBI_FEATURE(GCC)
+-       ;;
+-   esac
++   compiler="GCC"
++   ncbi_compiler="GCC"
++   ncbi_compiler_ver="$compiler_ver"
++   NCBI_FEATURE(GCC)
+ elif test "$KCC" = "yes" ; then
+    compiler_ver="$kcc_ver"
+    compiler="KCC"

Modified: trunk/packages/ncbi-blast+/trunk/debian/patches/series
===================================================================
--- trunk/packages/ncbi-blast+/trunk/debian/patches/series	2015-02-17 03:29:35 UTC (rev 18784)
+++ trunk/packages/ncbi-blast+/trunk/debian/patches/series	2015-02-17 03:38:41 UTC (rev 18785)
@@ -7,3 +7,4 @@
 skip_services_unit_test
 fix_configure
 fix_compilation
+allow_gcc5