[med-svn] [prokka] branch master updated (a5f1b37 -> 2caecb5)
Michael Crusoe
misterc-guest at moszumanska.debian.org
Sat Feb 21 19:36:58 UTC 2015
This is an automated email from the git hooks/post-receive script.
misterc-guest pushed a change to branch master
in repository prokka.
from a5f1b37 adding dfsg to version
new 9b5a85f arch:all as is just a Perl script
new 1d0753e prokka distributes via GitHub
new 8f419a4 Imported Upstream version 1.11+dfsg
new b9a4e51 add get-orig-source target; ship README.md
new 2caecb5 update copyright; new version; no ${shlibs} for Perl refresh manpages; add missing libswiss-perl dependency; fix paths
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 24 ++
README.md | 374 +++++++++++++++++++++++++++++
bin/prokka | 179 ++++++++++----
bin/prokka-genbank_to_fasta_db | 62 +++--
bin/prokka-uniprot_to_fasta_db | 9 +-
db/hmm/CLUSTERS.hmm | Bin 375777699 -> 0 bytes
db/hmm/Pfam.hmm | Bin 327312167 -> 0 bytes
debian/README.Debian | 5 +
debian/changelog | 2 +-
debian/control | 10 +-
debian/copyright | 30 ++-
debian/createmanpages | 2 +-
debian/docs | 1 +
debian/patches/set-db-dir | 39 +++-
debian/prokka-biocyc_to_fasta_db.1 | 2 +-
debian/prokka-build_kingdom_dbs.1 | 41 ----
debian/prokka-cdd_to_hmm.1 | 2 +-
debian/prokka-clusters_to_hmm.1 | 2 +-
debian/prokka-genbank_to_fasta_db.1 | 2 +-
debian/prokka-genpept_to_fasta_db.1 | 2 +-
debian/prokka-hamap_to_hmm.1 | 2 +-
debian/prokka-make_tarball.1 | 6 -
debian/prokka-tigrfams_to_hmm.1 | 6 -
debian/prokka-uniprot_to_fasta_db.1 | 34 ++-
debian/prokka.1 | 2 +-
debian/prokka.install | 9 +-
debian/prokka.manpages | 12 +-
debian/rules | 18 +-
debian/watch | 2 +-
doc/ChangeLog.txt | 19 ++
doc/ToDoList.txt | 6 +-
doc/prokka-manual.html | 215 -----------------
doc/prokka-manual.txt | 454 ------------------------------------
33 files changed, 723 insertions(+), 850 deletions(-)
create mode 100644 .gitignore
create mode 100644 README.md
delete mode 100644 db/hmm/CLUSTERS.hmm
delete mode 100644 db/hmm/Pfam.hmm
create mode 100644 debian/README.Debian
create mode 100644 debian/docs
delete mode 100644 debian/prokka-build_kingdom_dbs.1
delete mode 100644 debian/prokka-make_tarball.1
delete mode 100644 debian/prokka-tigrfams_to_hmm.1
delete mode 100644 doc/prokka-manual.html
delete mode 100644 doc/prokka-manual.txt
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