[med-svn] [subread] 02/04: d/changelog: add ITP d/control: add subread-data package d/copyright: add years and owners d/docs: removed d/subread-data.install: install data files in examples d/subread.docs: install docs in PDF format d/rules: include CFLAGS

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a commit to branch master
in repository subread.

commit ae9b32c6d05b7bd73fd15a3b0de370f11892335a
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Mon Feb 23 11:52:22 2015 +0100

    d/changelog: add ITP
    d/control: add subread-data package
    d/copyright: add years and owners
    d/docs: removed
    d/subread-data.install: install data files in examples
    d/subread.docs: install docs in PDF format
    d/rules: include CFLAGS
---
 debian/README.Debian        |  6 ------
 debian/changelog            |  2 +-
 debian/control              | 13 ++++++++++++-
 debian/copyright            | 10 ++--------
 debian/docs                 |  2 --
 debian/rules                |  4 +++-
 debian/subread-data.install |  2 ++
 debian/subread.docs         |  2 ++
 8 files changed, 22 insertions(+), 19 deletions(-)

diff --git a/debian/README.Debian b/debian/README.Debian
deleted file mode 100644
index 4afb145..0000000
--- a/debian/README.Debian
+++ /dev/null
@@ -1,6 +0,0 @@
-subread for Debian
-------------------
-
-<possible notes regarding this package - if none, delete this file>
-
- -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Fri, 20 Feb 2015 10:48:06 +0100
diff --git a/debian/changelog b/debian/changelog
index 6ba1630..87de722 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,5 +1,5 @@
 subread (1.4.6-p1-1) unstable; urgency=low
 
-  * Initial release (Closes: #nnnn)  <nnnn is the bug number of your ITP>
+  * Initial release. Closes: #779014
 
  -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Fri, 20 Feb 2015 10:48:06 +0100
diff --git a/debian/control b/debian/control
index 6968e4e..2b18b5a 100644
--- a/debian/control
+++ b/debian/control
@@ -9,7 +9,6 @@ Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/subread.git
 Vcs-Git: git://anonscm.debian.org/debian-med/subread.git
 Homepage: http://sourceforge.net/projects/subread/
 
-
 Package: subread
 Architecture: any
 Depends: ${shlibs:Depends},
@@ -19,3 +18,15 @@ Description: tool kit for processing next-gen sequencing data
  Subjunc aligner was specified designed for the detection of exon-exon 
  junction. For the mapping of RNA-seq reads, Subread performs local 
  alignments and Subjunc performs global alignments. 
+
+Package: subread-data
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: data files for subread package
+ This package provides data files from the original tarball:
+ - annotation: Directory including NCBI RefSeq gene annotations for 
+ genomes 'hg19', 'mm10' and 'mm9'. Each row is an exon.
+ Entrez gene identifiers and chromosomal coordinates are provided for 
+ each exon.
+ - test: Directory including test data and scripts. 
diff --git a/debian/copyright b/debian/copyright
index 643e01f..37eb786 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,10 +1,9 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: subread
-Source: <url://example.com>
+Source: http://sourceforge.net/projects/subread/files/ 
 
 Files: *
-Copyright: <years> <put author's name and email here>
-           <years> <likewise for another author>
+Copyright: 2011-2015, Dr Yang Liao, Dr Wei Shi
 License: GPL-3.0+
 
 Files: debian/*
@@ -27,8 +26,3 @@ License: GPL-3.0+
  .
  On Debian systems, the complete text of the GNU General
  Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
-
-# Please also look if there are files or directories which have a
-# different copyright/license attached and list them here.
-# Please avoid to pick license terms that are more restrictive than the
-# packaged work, as it may make Debian's contributions unacceptable upstream.
diff --git a/debian/docs b/debian/docs
deleted file mode 100644
index fa6b147..0000000
--- a/debian/docs
+++ /dev/null
@@ -1,2 +0,0 @@
-README.txt
-README.txt
diff --git a/debian/rules b/debian/rules
index 0cc2620..e6f24f0 100755
--- a/debian/rules
+++ b/debian/rules
@@ -6,12 +6,14 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 export DEB_CFLAGS_MAINT_APPEND  = -Wall -pedantic
 export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed
+CFLAGS:=$(shell dpkg-buildflags --get CFLAGS)
+LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS)
 
 %:
 	dh $@
 
 override_dh_clean:
-	cd src;make -f  Makefile.Linux clean
+	cd src; DEB_BUILD_HARDENING=1 make -f  Makefile.Linux clean
 	dh_clean
 
 override_dh_auto_build:
diff --git a/debian/subread-data.install b/debian/subread-data.install
new file mode 100644
index 0000000..10b1661
--- /dev/null
+++ b/debian/subread-data.install
@@ -0,0 +1,2 @@
+annotation usr/share/doc/subread/examples
+test	usr/share/doc/subread/examples
diff --git a/debian/subread.docs b/debian/subread.docs
new file mode 100644
index 0000000..05bd242
--- /dev/null
+++ b/debian/subread.docs
@@ -0,0 +1,2 @@
+README.txt
+doc/SubreadUsersGuide.pdf

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/subread.git