[med-svn] r18865 - in trunk/packages/trimmomatic/trunk/debian: . bin patches

[Andreas Tille]

Author: tille
Date: 2015-02-26 21:16:42 +0000 (Thu, 26 Feb 2015)
New Revision: 18865

Modified:
   trunk/packages/trimmomatic/trunk/debian/bin/TrimmomaticPE
   trunk/packages/trimmomatic/trunk/debian/changelog
   trunk/packages/trimmomatic/trunk/debian/install
   trunk/packages/trimmomatic/trunk/debian/patches/buildxmlJbzip2.patch
Log:
Revert switch to new version since bug #779296 is considered serious and we need to fix the issue in the current version


Modified: trunk/packages/trimmomatic/trunk/debian/bin/TrimmomaticPE
===================================================================
--- trunk/packages/trimmomatic/trunk/debian/bin/TrimmomaticPE	2015-02-26 20:09:23 UTC (rev 18864)
+++ trunk/packages/trimmomatic/trunk/debian/bin/TrimmomaticPE	2015-02-26 21:16:42 UTC (rev 18865)
@@ -8,4 +8,5 @@
     exit 1
 fi
 
+export ILLUMINACLIP=/usr/share/${ILLUMINACLIP}/adapters
 java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCTIONTOCALL $@

Modified: trunk/packages/trimmomatic/trunk/debian/changelog
===================================================================
--- trunk/packages/trimmomatic/trunk/debian/changelog	2015-02-26 20:09:23 UTC (rev 18864)
+++ trunk/packages/trimmomatic/trunk/debian/changelog	2015-02-26 21:16:42 UTC (rev 18865)
@@ -1,8 +1,9 @@
-trimmomatic (0.33+dfsg-1) UNRELEASED; urgency=medium
+trimmomatic (0.32+dfsg-3) UNRELEASED; urgency=medium
 
-  * New upstream version
+  * Install adapter files
+    Closes: #779296
 
- -- Andreas Tille <tille at debian.org>  Thu, 26 Feb 2015 21:06:27 +0100
+ -- Andreas Tille <tille at debian.org>  Thu, 26 Feb 2015 21:52:47 +0100
 
 trimmomatic (0.32+dfsg-2) unstable; urgency=medium
 

Modified: trunk/packages/trimmomatic/trunk/debian/install
===================================================================
--- trunk/packages/trimmomatic/trunk/debian/install	2015-02-26 20:09:23 UTC (rev 18864)
+++ trunk/packages/trimmomatic/trunk/debian/install	2015-02-26 21:16:42 UTC (rev 18865)
@@ -1 +1,2 @@
 debian/bin/*	usr/bin
+adapters	usr/share/trimmomatic

Modified: trunk/packages/trimmomatic/trunk/debian/patches/buildxmlJbzip2.patch
===================================================================
--- trunk/packages/trimmomatic/trunk/debian/patches/buildxmlJbzip2.patch	2015-02-26 20:09:23 UTC (rev 18864)
+++ trunk/packages/trimmomatic/trunk/debian/patches/buildxmlJbzip2.patch	2015-02-26 21:16:42 UTC (rev 18865)
@@ -4,7 +4,7 @@
 --- a/build.xml
 +++ b/build.xml
 @@ -2,7 +2,7 @@
- 	<property name="version" value="0.33"/>
+ 	<property name="version" value="0.32"/>
  	
  	<property name="src" location="src" />
 -	<property name="lib" location="lib" />