[med-svn] r18564 - in trunk/packages/plink/trunk/debian: . tests

[Dylan Aïssi]

Author: bob.dybian-guest
Date: 2015-01-11 10:22:04 +0000 (Sun, 11 Jan 2015)
New Revision: 18564

Modified:
   trunk/packages/plink/trunk/debian/examples
   trunk/packages/plink/trunk/debian/tests/run-sample-analysis
Log:
Fixed autopkgtest

Modified: trunk/packages/plink/trunk/debian/examples
===================================================================
--- trunk/packages/plink/trunk/debian/examples	2015-01-11 10:17:13 UTC (rev 18563)
+++ trunk/packages/plink/trunk/debian/examples	2015-01-11 10:22:04 UTC (rev 18564)
@@ -3,4 +3,4 @@
 test.map
 
 # Expected outputs for autopkgtest
-debian/output_tests
+debian/output_tests/*

Modified: trunk/packages/plink/trunk/debian/tests/run-sample-analysis
===================================================================
--- trunk/packages/plink/trunk/debian/tests/run-sample-analysis	2015-01-11 10:17:13 UTC (rev 18563)
+++ trunk/packages/plink/trunk/debian/tests/run-sample-analysis	2015-01-11 10:22:04 UTC (rev 18564)
@@ -2,21 +2,23 @@
 # http://dep.debian.net/deps/dep8/
 # Autopkgtest: Test if plink run analysis correctly
 # Author: Dylan Aïssi <bob.dybian at gmail.com>
-# Last-Update: 2015-01-10
+# Last-Update: 2015-01-11
 
 pkg=plink
 if [ "$ADTTMP" = "" ] ; then
   ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi
 cd $ADTTMP
-cp -a /usr/share/doc/${pkg}/examples/output_tests/* $ADTTMP
+cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP
 
+PLINK_TEST='plink --noweb --file test'
+
 # Allele frequencies
-plink --noweb --file test --freq
+$PLINK_TEST --freq
 diff plink.frq expected.plink.frq
 
 # Case/control or QTL association
-plink --noweb --file test --assoc
+$PLINK_TEST --assoc
 diff plink.assoc expected.plink.assoc
 
 rm -f $ADTTMP/*