[med-svn] [mia] branch master updated (d69f6c9 -> a4deef1)
Gert Wollny
gert-guest at moszumanska.debian.org
Wed Jan 14 11:08:13 UTC 2015
This is an automated email from the git hooks/post-receive script.
gert-guest pushed a change to branch master
in repository mia.
from d69f6c9 add printing out the test log if make test fails
new 365a539 Imported Upstream version 2.2.3
new 9f671b7 Merge tag 'upstream/2.2.3'
new 6d19739 add nipype interfaces as extra package
new 36f83fb correct new rules
new b51f583 correct minor errors in the created manpages
new f30ad43 add patch to silence lintian
new 4cffc3f correct the patch application
new 03a067e move the nipype interfaces to mia-tools
new 141ad80 add override for missing python dependency
new 7953ce9 Update the changelog
new a4deef1 correct changelog
The 11 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 14 +-
ChangeLog | 9 +
.../filter/vtxsort.hh => addons/jpg/jpeg-common.hh | 58 ++--
addons/jpg/jpg-gray.cc | 90 ++---
addons/jpg/jpg-rgb.cc | 74 ++---
addons/nifti/niftiimage.cc | 54 +--
addons/nifti/test_niftiimage.cc | 1 +
cmake/macros.cmake | 98 ++++--
debian/changelog | 10 +
debian/control | 4 +
debian/libmia-2.2-dev.install | 1 +
debian/libmia-2.2-dev.lintian-overrides | 9 +
debian/mia-tools.install | 1 +
debian/patches/02-manpage-correction.patch | 37 +++
debian/patches/series | 1 +
debian/rules | 6 +-
doc/CMakeLists.txt | 42 ++-
doc/MiaDoctools.cmake | 187 +++++++++++
doc/__init__.py | 1 +
doc/extract_docu.py | 159 ---------
doc/mia-xmldoc2man.cmake | 5 +
doc/mia-xmldoc2nipype.cmake | 5 +
doc/miareadxml.py | 168 +++++++++-
doc/miaxml2html.py | 112 -------
doc/miaxml2man.py | 7 +-
doc/miaxml2nipype.py | 366 +++++++++++++++++++++
doc/miaxml2sgml.py | 2 +-
mia/2d/creator/circle.cc | 1 -
mia/2d/filter.cc | 1 -
mia/2d/filter/CMakeLists.txt | 3 +-
mia/2d/filter/labelscale.cc | 166 ++++++++++
mia/2d/filter/{shaped_mean.hh => labelscale.hh} | 24 +-
mia/2d/filter/test_labelscale.cc | 128 +++++++
mia/2d/filtertest.cc | 1 -
mia/2d/fullcost/CMakeLists.txt | 2 +-
mia/2d/fullcost/label.cc | 340 +++++++++++++++++++
mia/2d/fullcost/{image.hh => label.hh} | 53 ++-
mia/2d/fullcost/test_label.cc | 127 +++++++
mia/2d/imageiotest.cc | 1 -
mia/2d/imagetest.cc | 1 -
mia/2d/interpolator.cc | 2 -
mia/2d/register.cc | 3 +-
mia/2d/test_combiner.cc | 1 -
mia/2d/test_distance.cc | 1 -
mia/2d/test_filter.cc | 2 +-
mia/2d/test_filter_cast.cc | 1 -
mia/2d/test_fullcost.cc | 4 +-
mia/2d/test_ica.cc | 1 -
mia/2d/test_image.cc | 2 -
mia/2d/test_imageio.cc | 1 -
mia/2d/test_interpol.cc | 1 -
mia/2d/test_modelsolverreg.cc | 1 -
mia/2d/test_nfg.cc | 1 -
mia/2d/test_oldnewintegrate.cc | 1 -
mia/2d/test_ppmatrix.cc | 17 +-
mia/2d/test_regplugins.cc | 1 -
mia/2d/test_segframe.cc | 1 -
mia/2d/test_segmentation.cc | 1 -
mia/2d/test_shape.cc | 1 -
mia/2d/test_transformfactory.cc | 1 -
mia/2d/test_vectorfield_interpolator.cc | 1 -
mia/2d/test_vfio.cc | 1 -
mia/2d/vfiotest.cc | 1 -
mia/3d/datafield.cxx | 36 ++
mia/3d/datafield.hh | 14 +
mia/3d/fifof/morphological.cc | 1 -
mia/3d/fifof/regiongrow.cc | 2 +-
mia/3d/filter.cc | 2 -
mia/3d/filter/CMakeLists.txt | 1 +
mia/3d/filter/labelscale.cc | 177 ++++++++++
mia/3d/filter/{tee.hh => labelscale.hh} | 23 +-
mia/3d/filter/test_bandpass.cc | 1 -
mia/3d/filter/test_binarize.cc | 1 -
mia/3d/filter/test_convert.cc | 1 -
mia/3d/filter/test_crop.cc | 1 -
mia/3d/filter/test_downscale.cc | 1 -
mia/3d/filter/test_gradnorm.cc | 1 -
mia/3d/filter/test_growmask.cc | 1 -
mia/3d/filter/test_invert.cc | 1 -
mia/3d/filter/test_kmeans.cc | 1 -
mia/3d/filter/test_label.cc | 1 -
mia/3d/filter/test_labelscale.cc | 169 ++++++++++
mia/3d/filter/test_load.cc | 1 -
mia/3d/filter/test_mask.cc | 1 -
mia/3d/filter/test_median.cc | 1 -
mia/3d/filter/test_mlv.cc | 1 -
mia/3d/filter/test_morphological.cc | 1 -
mia/3d/filter/test_reorient.cc | 1 -
mia/3d/filter/test_scale.cc | 1 -
mia/3d/filter/test_selectbig.cc | 1 -
mia/3d/filter/test_sepconv.cc | 1 -
mia/3d/filter/test_tee.cc | 1 -
mia/3d/fullcost/CMakeLists.txt | 2 +-
mia/3d/fullcost/label.cc | 321 ++++++++++++++++++
mia/3d/fullcost/{image.hh => label.hh} | 59 +++-
mia/3d/fullcost/test_label.cc | 203 ++++++++++++
mia/3d/image.hh | 21 ++
mia/3d/imageiotest.cc | 2 -
mia/3d/imagetest.cc | 1 -
mia/3d/interpolator.cc | 1 -
mia/3d/multireg.cc | 1 -
mia/3d/test_combiner.cc | 1 -
mia/3d/test_cost.cc | 3 -
mia/3d/test_deform.cc | 2 -
mia/3d/test_ica.cc | 1 -
mia/3d/test_image.cc | 1 -
mia/3d/test_interpol.cc | 1 -
mia/3d/test_nfg.cc | 1 -
mia/3d/test_orientation.cc | 3 -
mia/3d/test_regplugins.cc | 1 -
mia/3d/test_shape.cc | 1 -
mia/3d/test_transformfactory.cc | 2 -
mia/3d/test_vfio.cc | 2 -
mia/3d/transform/rotbend.cc | 72 ++--
mia/3d/transform/rotbend.hh | 6 +-
mia/3d/transform/test_rotbend.cc | 12 +-
mia/3d/vfiotest.cc | 3 +-
mia/core/CMakeLists.txt | 2 +
mia/core/attributes.hh | 6 +-
mia/core/cmdbooloption.cc | 8 +-
mia/core/cmdbooloption.hh | 3 +-
mia/core/cmdlineparser.cc | 182 +++++-----
mia/core/cmdlineparser.hh | 100 ++----
mia/core/cmdoption.cc | 19 +-
mia/core/cmdoption.hh | 5 +-
mia/core/cmdoptionflags.hh | 9 +-
mia/core/handler.hh | 12 +-
mia/core/minimizer/gdas.cc | 9 +-
mia/core/parameter.cc | 6 +-
.../selftestcmdoption.cc} | 21 +-
mia/core/selftestcmdoption.hh | 89 +++++
mia/core/statistics.hh | 2 +-
mia/core/test_attributes.cc | 4 +-
miacore.pc.cmake | 3 +
src/2davgmasked.cc | 2 +-
src/2dcost.cc | 4 +-
src/2ddistance.cc | 37 ++-
src/2dgrayimage-combine-to-rgb.cc | 2 +-
src/2dimagecombine-dice.cc | 2 +-
src/2dimagefilter.cc | 4 -
src/2dimagefilterstack.cc | 6 -
src/2dimagefullstats.cc | 1 +
src/2dimageregistration.cc | 8 +-
src/2dimagestats.cc | 1 +
src/2dlerp.cc | 35 +-
src/2dmany2one-nonrigid.cc | 2 +-
src/2dmulti-force.cc | 51 ++-
...rigidreg-alt.cc => 2dmultiimageregistration.cc} | 36 +-
src/2dmyocard-ica.cc | 3 +-
src/2dmyocard-icaseries.cc | 6 +-
src/2dmyoseries-compdice.cc | 1 +
src/2dmyoseries-dice.cc | 2 +-
src/2dsegcompare.cc | 2 +
src/2dseghausdorff.cc | 1 +
src/2dsegseriesstats.cc | 6 +-
src/2dseries-mincorr.cc | 4 +-
src/2dseries-segdistance.cc | 3 +
src/2dseries2sets.cc | 2 +-
src/2dserieshausdorff.cc | 1 +
src/2dstackfilter.cc | 5 +-
src/3dcost.cc | 2 +-
src/3ddistance-stats.cc | 5 +-
src/3dfield2norm.cc | 6 +-
src/3dgetsize.cc | 2 +-
src/3dgetslice.cc | 21 +-
src/3dimagecombine.cc | 2 +-
src/3dimagefilter.cc | 2 -
src/3dimagefilterstack.cc | 6 +-
src/3dimagestats.cc | 3 +-
src/3dlandmarks-distances.cc | 2 +-
src/3dlerp.cc | 33 +-
src/3dnonrigidreg.cc | 8 +-
src/3drigidreg.cc | 8 +-
src/3dseries-track-intensity.cc | 2 +-
src/3dvfcompare.cc | 6 +-
src/CMakeLists.txt | 20 +-
src/__init__.py | 1 +
src/filenumberpattern.cc | 1 +
src/fluid2d/CMakeLists.txt | 3 +-
src/fluid2d/main.cc | 6 +-
src/fluid3d/CMakeLists.txt | 3 +-
src/fluid3d/main.cc | 8 +-
src/isosurface/CMakeLists.txt | 4 +-
src/meshfilter.cc | 4 -
src/multihist.cc | 2 +-
src/myowavelettest.cc | 3 +-
src/plugin-help.cc | 2 +
src/test_plugins_as_installed.cc | 8 +-
188 files changed, 3422 insertions(+), 1042 deletions(-)
copy mia/mesh/filter/vtxsort.hh => addons/jpg/jpeg-common.hh (53%)
create mode 100644 debian/libmia-2.2-dev.lintian-overrides
create mode 100644 debian/patches/02-manpage-correction.patch
create mode 100644 doc/MiaDoctools.cmake
create mode 100644 doc/__init__.py
delete mode 100644 doc/extract_docu.py
create mode 100644 doc/mia-xmldoc2man.cmake
create mode 100644 doc/mia-xmldoc2nipype.cmake
delete mode 100644 doc/miaxml2html.py
create mode 100644 doc/miaxml2nipype.py
create mode 100644 mia/2d/filter/labelscale.cc
copy mia/2d/filter/{shaped_mean.hh => labelscale.hh} (72%)
create mode 100644 mia/2d/filter/test_labelscale.cc
create mode 100644 mia/2d/fullcost/label.cc
copy mia/2d/fullcost/{image.hh => label.hh} (52%)
create mode 100644 mia/2d/fullcost/test_label.cc
create mode 100644 mia/3d/filter/labelscale.cc
copy mia/3d/filter/{tee.hh => labelscale.hh} (72%)
create mode 100644 mia/3d/filter/test_labelscale.cc
create mode 100644 mia/3d/fullcost/label.cc
copy mia/3d/fullcost/{image.hh => label.hh} (50%)
create mode 100644 mia/3d/fullcost/test_label.cc
copy mia/{3d/similarity_profile.cc => core/selftestcmdoption.cc} (72%)
create mode 100644 mia/core/selftestcmdoption.hh
copy src/{3dnonrigidreg-alt.cc => 2dmultiimageregistration.cc} (71%)
create mode 100644 src/__init__.py
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/mia.git
More information about the debian-med-commit
mailing list