[med-svn] [itksnap] 02/15: update .gitignore resolving conflicts

Gert Wollny gert-guest at moszumanska.debian.org
Wed Jan 14 15:57:20 UTC 2015


This is an automated email from the git hooks/post-receive script.

gert-guest pushed a commit to branch master
in repository itksnap.

commit a108041bc1f2f2a9c324edb031af0847fb92a202
Merge: af35b22 526cf29
Author: Gert Wollny <gw.fossdev at gmail.com>
Date:   Wed Jan 14 13:00:27 2015 +0100

    update .gitignore resolving conflicts

 .gitignore                                         |   17 +-
 CMake/CustomBuildSettings.cmake                    |   38 -
 CMake/DeployQt5.cmake                              |  339 +
 CMake/find_fltk_13.cmake                           |  158 -
 CMake/rpavlik/GetGitRevisionDescription.cmake      |  130 +
 CMake/rpavlik/GetGitRevisionDescription.cmake.in   |   38 +
 CMake/standalone.cmake                             |   57 +-
 CMakeLists.txt                                     | 1295 ++--
 CTestConfig.cmake                                  |    6 +-
 Common/AbstractModel.cxx                           |  130 +
 Common/AbstractModel.h                             |  111 +
 Common/AbstractPropertyContainerModel.cxx          |   86 +
 Common/AbstractPropertyContainerModel.h            |  360 +
 Common/CommandLineArgumentParser.cxx               |   21 +-
 Common/CommandLineArgumentParser.h                 |   11 +
 Common/EventBucket.cxx                             |   80 +
 Common/EventBucket.h                               |   75 +
 Common/GPUSettings.h.in                            |    2 +
 Common/HistoryManager.cxx                          |  133 +
 Common/HistoryManager.h                            |  136 +
 Common/IPCHandler.cxx                              |  218 +
 Common/IPCHandler.h                                |   83 +
 Common/IRISException.cxx                           |   31 +-
 Common/IRISException.h                             |   32 +-
 Common/IRISVectorTypes.h                           |   62 +-
 Common/ITKExtras/itkVoxBoCUBImageIO.cxx            |   42 +-
 Common/PresetManager.h                             |  111 +
 Common/PresetManager.hxx                           |  151 +
 Common/PropertyModel.h                             | 1188 ++++
 Common/Rebroadcaster.cxx                           |  231 +
 Common/Rebroadcaster.h                             |  116 +
 Common/Registry.cxx                                |  329 +-
 Common/Registry.h                                  |   89 +-
 Common/SNAPCommon.cxx.in                           |   19 +
 Common/SNAPCommon.h                                |  196 +-
 Common/SNAPEventListenerCallbacks.h                |   77 +
 Common/SNAPEvents.h                                |  180 +
 Common/SNAPOpenGL.cxx                              |   39 +
 Common/SNAPOpenGL.h                                |   25 +-
 Common/SystemInterface.cxx                         |  853 +--
 Common/SystemInterface.h                           |  129 +-
 Common/ThreadSpecificData.cxx                      |  115 +
 Common/ThreadSpecificData.h                        |   76 +
 {UserInterface/Window3D => Common}/Trackball.cxx   |    0
 Common/Trackball.h                                 |  129 +
 Documentation/DesignNotes/gui_design.txt           |   56 +
 Documentation/Shortcuts/Shortcuts_SNAP3.pages      |  Bin 0 -> 110336 bytes
 Documentation/Shortcuts/Shortcuts_SNAP3.pdf        |  Bin 0 -> 50039 bytes
 GUI/Model/AbstractLayerAssociatedModel.h           |  258 +
 GUI/Model/AbstractLayerInfoItemSetDomain.h         |   62 +
 GUI/Model/CollectionModel.cxx                      |    5 +
 GUI/Model/CollectionModel.h                        |  210 +
 GUI/Model/ColorLabelPropertyModel.cxx              |  143 +
 GUI/Model/ColorLabelPropertyModel.h                |  117 +
 GUI/Model/ColorLabelQuickListModel.cxx             |  131 +
 GUI/Model/ColorLabelQuickListModel.h               |   59 +
 GUI/Model/ColorMapModel.cxx                        |  661 ++
 GUI/Model/ColorMapModel.h                          |  234 +
 GUI/Model/CursorInspectionModel.cxx                |  162 +
 GUI/Model/CursorInspectionModel.h                  |   99 +
 GUI/Model/DisplayLayoutModel.cxx                   |  215 +
 GUI/Model/DisplayLayoutModel.h                     |  113 +
 GUI/Model/Generic3DModel.cxx                       |  453 ++
 GUI/Model/Generic3DModel.h                         |  173 +
 GUI/Model/GenericSliceModel.cxx                    |  598 ++
 GUI/Model/GenericSliceModel.h                      |  343 +
 GUI/Model/GlobalPreferencesModel.cxx               |  203 +
 GUI/Model/GlobalPreferencesModel.h                 |  134 +
 GUI/Model/GlobalUIModel.cxx                        |  873 +++
 GUI/Model/GlobalUIModel.h                          |  428 ++
 GUI/Model/ImageIOWizardModel.cxx                   |  405 ++
 GUI/Model/ImageIOWizardModel.h                     |  229 +
 GUI/Model/ImageInfoModel.cxx                       |  204 +
 GUI/Model/ImageInfoModel.h                         |   97 +
 GUI/Model/IntensityCurveModel.cxx                  |  748 +++
 GUI/Model/IntensityCurveModel.h                    |  242 +
 GUI/Model/LabelEditorModel.cxx                     |  374 ++
 GUI/Model/LabelEditorModel.h                       |  126 +
 GUI/Model/LayerGeneralPropertiesModel.cxx          |  357 +
 GUI/Model/LayerGeneralPropertiesModel.h            |  142 +
 GUI/Model/LayerSelectionModel.cxx                  |   22 +
 GUI/Model/LayerSelectionModel.h                    |   54 +
 GUI/Model/LayerTableRowModel.cxx                   |  371 ++
 GUI/Model/LayerTableRowModel.h                     |  175 +
 GUI/Model/MeshExportModel.cxx                      |  179 +
 GUI/Model/MeshExportModel.h                        |  105 +
 GUI/Model/NumericPropertyToggleAdaptor.h           |  122 +
 GUI/Model/OrthogonalSliceCursorNavigationModel.cxx |  185 +
 GUI/Model/OrthogonalSliceCursorNavigationModel.h   |   93 +
 GUI/Model/PaintbrushModel.cxx                      |  490 ++
 GUI/Model/PaintbrushModel.h                        |   69 +
 GUI/Model/PaintbrushSettingsModel.cxx              |  136 +
 GUI/Model/PaintbrushSettingsModel.h                |   65 +
 GUI/Model/PolygonDrawingModel.cxx                  |  862 +++
 GUI/Model/PolygonDrawingModel.h                    |  192 +
 GUI/Model/RandomAccessCollectionModel.cxx          |    2 +
 GUI/Model/RandomAccessCollectionModel.h            |  242 +
 GUI/Model/RegistryEntryPropertyModel.h             |   75 +
 GUI/Model/ReorientImageModel.cxx                   |  332 +
 GUI/Model/ReorientImageModel.h                     |  145 +
 GUI/Model/SNAPUIFlag.h                             |   79 +
 GUI/Model/SNAPUIFlag.txx                           |    0
 GUI/Model/SaveModifiedLayersModel.cxx              |  301 +
 GUI/Model/SaveModifiedLayersModel.h                |  207 +
 GUI/Model/SliceWindowCoordinator.cxx               |  471 ++
 GUI/Model/SliceWindowCoordinator.h                 |  188 +
 GUI/Model/SnakeParameterModel.cxx                  |  379 ++
 GUI/Model/SnakeParameterModel.h                    |  126 +
 GUI/Model/SnakeROIModel.cxx                        |  299 +
 GUI/Model/SnakeROIModel.h                          |  141 +
 GUI/Model/SnakeROIResampleModel.cxx                |  256 +
 GUI/Model/SnakeROIResampleModel.h                  |  100 +
 GUI/Model/SnakeWizardModel.cxx                     | 1579 +++++
 GUI/Model/SnakeWizardModel.h                       |  446 ++
 GUI/Model/StateManagement.cxx                      |   79 +
 GUI/Model/StateManagement.h                        |  134 +
 GUI/Model/SynchronizationModel.cxx                 |  221 +
 GUI/Model/SynchronizationModel.h                   |   60 +
 GUI/Model/UIAction.cxx                             |    9 +
 GUI/Model/UIAction.h                               |   51 +
 GUI/Model/UIReporterDelegates.cxx                  |    5 +
 GUI/Model/UIReporterDelegates.h                    |   90 +
 GUI/Model/UIState.h                                |   22 +
 GUI/Qt/Components/.DS_Store                        |  Bin 0 -> 6148 bytes
 GUI/Qt/Components/CollapsableGroupBox.cxx          |   35 +
 GUI/Qt/Components/CollapsableGroupBox.h            |   31 +
 GUI/Qt/Components/CollapsableGroupBox.ui           |  102 +
 GUI/Qt/Components/ColorLabelQuickListWidget.cxx    |  124 +
 GUI/Qt/Components/ColorLabelQuickListWidget.h      |   57 +
 GUI/Qt/Components/ColorMapInspector.cxx            |  180 +
 GUI/Qt/Components/ColorMapInspector.h              |   61 +
 GUI/Qt/Components/ColorMapInspector.ui             |  602 ++
 GUI/Qt/Components/ContrastInspector.cxx            |  103 +
 GUI/Qt/Components/ContrastInspector.h              |   51 +
 GUI/Qt/Components/ContrastInspector.ui             |  721 ++
 GUI/Qt/Components/CursorInspector.cxx              |  163 +
 GUI/Qt/Components/CursorInspector.h                |   47 +
 GUI/Qt/Components/CursorInspector.ui               |  348 +
 GUI/Qt/Components/DisplayLayoutInspector.cxx       |   35 +
 GUI/Qt/Components/DisplayLayoutInspector.h         |   28 +
 GUI/Qt/Components/DisplayLayoutInspector.ui        |  339 +
 GUI/Qt/Components/FileChooserPanelWithHistory.cxx  |  631 ++
 GUI/Qt/Components/FileChooserPanelWithHistory.h    |  125 +
 GUI/Qt/Components/FileChooserPanelWithHistory.ui   |  224 +
 GUI/Qt/Components/GeneralLayerInspector.cxx        |   55 +
 GUI/Qt/Components/GeneralLayerInspector.h          |   29 +
 GUI/Qt/Components/GeneralLayerInspector.ui         |  208 +
 GUI/Qt/Components/HistoryQListModel.cxx            |   81 +
 GUI/Qt/Components/HistoryQListModel.h              |   45 +
 GUI/Qt/Components/ImageInfoInspector.cxx           |   52 +
 GUI/Qt/Components/ImageInfoInspector.h             |   29 +
 GUI/Qt/Components/ImageInfoInspector.ui            |  964 +++
 GUI/Qt/Components/LabelInspector.cxx               |   54 +
 GUI/Qt/Components/LabelInspector.h                 |   33 +
 GUI/Qt/Components/LabelInspector.ui                |  431 ++
 GUI/Qt/Components/LabelMiniInspector.cxx           |   52 +
 GUI/Qt/Components/LabelMiniInspector.h             |   33 +
 GUI/Qt/Components/LabelMiniInspector.ui            |  280 +
 GUI/Qt/Components/LabelSelectionButton.cxx         |  307 +
 GUI/Qt/Components/LabelSelectionButton.h           |   73 +
 GUI/Qt/Components/LatentITKEventNotifier.cxx       |  186 +
 GUI/Qt/Components/LatentITKEventNotifier.h         |   88 +
 GUI/Qt/Components/LayerInspectorRowDelegate.cxx    |  473 ++
 GUI/Qt/Components/LayerInspectorRowDelegate.h      |  111 +
 GUI/Qt/Components/LayerInspectorRowDelegate.ui     |  433 ++
 GUI/Qt/Components/MetadataInspector.cxx            |   82 +
 GUI/Qt/Components/MetadataInspector.h              |   63 +
 GUI/Qt/Components/MetadataInspector.ui             |  103 +
 GUI/Qt/Components/PaintbrushToolPanel.cxx          |   58 +
 GUI/Qt/Components/PaintbrushToolPanel.h            |   27 +
 GUI/Qt/Components/PaintbrushToolPanel.ui           |  421 ++
 GUI/Qt/Components/QActionButton.cxx                |   46 +
 GUI/Qt/Components/QActionButton.h                  |   31 +
 GUI/Qt/Components/QColorButtonWidget.cxx           |   35 +
 GUI/Qt/Components/QColorButtonWidget.h             |   33 +
 GUI/Qt/Components/QDoubleSlider.cxx                |   46 +
 GUI/Qt/Components/QDoubleSlider.h                  |   69 +
 GUI/Qt/Components/QDoubleSliderWithEditor.cxx      |  162 +
 GUI/Qt/Components/QDoubleSliderWithEditor.h        |   65 +
 GUI/Qt/Components/QDoubleSliderWithEditor.ui       |   44 +
 GUI/Qt/Components/QtCursorOverride.h               |   42 +
 GUI/Qt/Components/QtIPCManager.cxx                 |   33 +
 GUI/Qt/Components/QtIPCManager.h                   |   38 +
 GUI/Qt/Components/QtRendererPlatformSupport.cxx    |  128 +
 GUI/Qt/Components/QtRendererPlatformSupport.h      |   23 +
 GUI/Qt/Components/QtReporterDelegates.cxx          |  154 +
 GUI/Qt/Components/QtReporterDelegates.h            |   92 +
 GUI/Qt/Components/QtWarningDialog.cxx              |   56 +
 GUI/Qt/Components/QtWarningDialog.h                |   40 +
 GUI/Qt/Components/QtWarningDialog.ui               |  105 +
 GUI/Qt/Components/QtWidgetActivator.cxx            |   75 +
 GUI/Qt/Components/QtWidgetActivator.h              |  102 +
 GUI/Qt/Components/RecentHistoryItemsView.cxx       |   98 +
 GUI/Qt/Components/RecentHistoryItemsView.h         |   51 +
 GUI/Qt/Components/RecentHistoryItemsView.ui        |  505 ++
 GUI/Qt/Components/SNAPComponent.cxx                |   46 +
 GUI/Qt/Components/SNAPComponent.h                  |   46 +
 GUI/Qt/Components/SNAPQtCommon.cxx                 |  533 ++
 GUI/Qt/Components/SNAPQtCommon.h                   |  155 +
 GUI/Qt/Components/SliceViewPanel.cxx               |  503 ++
 GUI/Qt/Components/SliceViewPanel.h                 |  108 +
 GUI/Qt/Components/SliceViewPanel.ui                |  983 +++
 GUI/Qt/Components/SnakeToolROIPanel.cxx            |   75 +
 GUI/Qt/Components/SnakeToolROIPanel.h              |   35 +
 GUI/Qt/Components/SnakeToolROIPanel.ui             |  342 +
 GUI/Qt/Components/SnakeWizardPanel.cxx             |  475 ++
 GUI/Qt/Components/SnakeWizardPanel.h               |  134 +
 GUI/Qt/Components/SnakeWizardPanel.ui              | 2081 ++++++
 GUI/Qt/Components/SynchronizationInspector.cxx     |   41 +
 GUI/Qt/Components/SynchronizationInspector.h       |   28 +
 GUI/Qt/Components/SynchronizationInspector.ui      |  204 +
 GUI/Qt/Components/ViewPanel3D.cxx                  |  288 +
 GUI/Qt/Components/ViewPanel3D.h                    |  109 +
 GUI/Qt/Components/ViewPanel3D.ui                   |  312 +
 GUI/Qt/Components/VoxelIntensityQTableModel.cxx    |  116 +
 GUI/Qt/Components/VoxelIntensityQTableModel.h      |  100 +
 GUI/Qt/Components/ZoomInspector.cxx                |   96 +
 GUI/Qt/Components/ZoomInspector.h                  |   65 +
 GUI/Qt/Components/ZoomInspector.ui                 |  380 ++
 GUI/Qt/Coupling/QtAbstractButtonCoupling.h         |  160 +
 GUI/Qt/Coupling/QtAbstractItemViewCoupling.h       |  294 +
 GUI/Qt/Coupling/QtActionCoupling.h                 |   36 +
 GUI/Qt/Coupling/QtActionGroupCoupling.h            |   49 +
 GUI/Qt/Coupling/QtCheckBoxCoupling.h               |   59 +
 GUI/Qt/Coupling/QtCheckableWidgetGroupCoupling.h   |   97 +
 GUI/Qt/Coupling/QtColorWheelCoupling.h             |   51 +
 GUI/Qt/Coupling/QtComboBoxCoupling.h               |  267 +
 GUI/Qt/Coupling/QtDoubleSliderWithEditorCoupling.h |   84 +
 GUI/Qt/Coupling/QtDoubleSpinBoxCoupling.h          |   98 +
 GUI/Qt/Coupling/QtLabelCoupling.h                  |   43 +
 GUI/Qt/Coupling/QtLineEditCoupling.h               |  122 +
 GUI/Qt/Coupling/QtListWidgetCoupling.h             |  141 +
 GUI/Qt/Coupling/QtPagedWidgetCoupling.h            |  106 +
 GUI/Qt/Coupling/QtRadioButtonCoupling.h            |   73 +
 GUI/Qt/Coupling/QtScrollbarCoupling.h              |   74 +
 GUI/Qt/Coupling/QtSliderCoupling.h                 |  120 +
 GUI/Qt/Coupling/QtSpinBoxCoupling.h                |   88 +
 GUI/Qt/Coupling/QtTableWidgetCoupling.cxx          |    5 +
 GUI/Qt/Coupling/QtTableWidgetCoupling.h            |  299 +
 GUI/Qt/Coupling/QtToolbarCoupling.h                |  146 +
 GUI/Qt/Coupling/QtWidgetArrayCoupling.h            |  433 ++
 GUI/Qt/Coupling/QtWidgetCoupling.h                 |  719 ++
 GUI/Qt/External/ColorWheel/ColorWheel.cxx          |  321 +
 GUI/Qt/External/ColorWheel/ColorWheel.h            |   65 +
 GUI/Qt/ModelView/GMMTableModel.cxx                 |  351 +
 GUI/Qt/ModelView/GMMTableModel.h                   |   91 +
 GUI/Qt/Resources/COPYING                           |  674 ++
 GUI/Qt/Resources/SNAPResources.qrc                 |  115 +
 GUI/Qt/Resources/arrow_down_16.png                 |  Bin 0 -> 939 bytes
 GUI/Qt/Resources/arrow_up_16.png                   |  Bin 0 -> 907 bytes
 GUI/Qt/Resources/brush_shape_adaptive.png          |  Bin 0 -> 1210 bytes
 GUI/Qt/Resources/brush_shape_round.png             |  Bin 0 -> 1199 bytes
 GUI/Qt/Resources/brush_shape_square.png            |  Bin 0 -> 1153 bytes
 GUI/Qt/Resources/combo_all_labels.png              |  Bin 0 -> 937 bytes
 GUI/Qt/Resources/combo_visible_labels.png          |  Bin 0 -> 6502 bytes
 GUI/Qt/Resources/configure.png                     |  Bin 0 -> 1962 bytes
 GUI/Qt/Resources/credits.html                      |   25 +
 GUI/Qt/Resources/crosshair.gif                     |  Bin 0 -> 1753 bytes
 GUI/Qt/Resources/crosshair3D.gif                   |  Bin 0 -> 2405 bytes
 .../Qt/Resources}/crosshair3Dtiny.gif              |  Bin
 GUI/Qt/Resources/crosshair_cursor_bitmap.png       |  Bin 0 -> 163 bytes
 GUI/Qt/Resources/crosshair_cursor_mask.png         |  Bin 0 -> 146 bytes
 GUI/Qt/Resources/delete_22.png                     |  Bin 0 -> 1586 bytes
 GUI/Qt/Resources/dl_3d.png                         |  Bin 0 -> 1396 bytes
 GUI/Qt/Resources/dl_axial.png                      |  Bin 0 -> 1332 bytes
 GUI/Qt/Resources/dl_coronal.png                    |  Bin 0 -> 1368 bytes
 GUI/Qt/Resources/dl_fourviews.png                  |  Bin 0 -> 1182 bytes
 GUI/Qt/Resources/dl_sagittal.png                   |  Bin 0 -> 1380 bytes
 GUI/Qt/Resources/dl_toolbox.png                    |  Bin 0 -> 1204 bytes
 GUI/Qt/Resources/dlg_error_32.png                  |  Bin 0 -> 1929 bytes
 GUI/Qt/Resources/dlg_warning_32.png                |  Bin 0 -> 1797 bytes
 GUI/Qt/Resources/edgefunction.png                  |  Bin 0 -> 9457 bytes
 GUI/Qt/Resources/expand_16.png                     |  Bin 0 -> 1218 bytes
 GUI/Qt/Resources/fancyslider.css                   |   53 +
 GUI/Qt/Resources/fltkbutton.png                    |  Bin 0 -> 1158 bytes
 GUI/Qt/Resources/fltkbutton_pressed.png            |  Bin 0 -> 1043 bytes
 GUI/Qt/Resources/fltkpanel.png                     |  Bin 0 -> 1101 bytes
 .../Artwork => GUI/Qt/Resources}/formula01.gif     |  Bin
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 GUI/Qt/Resources/icons8_down_18.png                |  Bin 0 -> 1570 bytes
 GUI/Qt/Resources/icons8_fantasy_16.png             |  Bin 0 -> 1693 bytes
 GUI/Qt/Resources/icons8_invisible_16.png           |  Bin 0 -> 842 bytes
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 GUI/Qt/Resources/icons8_unpin_16.png               |  Bin 0 -> 1725 bytes
 GUI/Qt/Resources/icons8_up_18.png                  |  Bin 0 -> 1560 bytes
 GUI/Qt/Resources/icons8_visible_16.png             |  Bin 0 -> 827 bytes
 GUI/Qt/Resources/icons8_zoomin_16.png              |  Bin 0 -> 1710 bytes
 GUI/Qt/Resources/icons8_zoomout_16.png             |  Bin 0 -> 1701 bytes
 GUI/Qt/Resources/icontabwidget.css                 |   30 +
 .../itkLogoSmallTransparentBackground.gif          |  Bin
 GUI/Qt/Resources/itksnap.css                       |   35 +
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 GUI/Qt/Resources/layout_overlay_16.png             |  Bin 0 -> 1303 bytes
 GUI/Qt/Resources/layout_tile_16.png                |  Bin 0 -> 1287 bytes
 GUI/Qt/Resources/license.txt                       |  674 ++
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 .../Artwork => GUI/Qt/Resources}/logo.gif          |  Bin
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 .../snapres/SnakeParameterPreviewCurve.txt         |   12 +
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 GUI/Qt/View/ColorMapBox.cxx                        |   66 +
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 GUI/Qt/View/CrosshairsInteractionMode.cxx          |  284 +
 GUI/Qt/View/CrosshairsInteractionMode.h            |   85 +
 GUI/Qt/View/GenericSliceView.cxx                   |   71 +
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 GUI/Qt/View/QtVTKRenderWindowBox.h                 |   35 +
 .../View/SliceWindowInteractionDelegateWidget.cxx  |  105 +
 GUI/Qt/View/SliceWindowInteractionDelegateWidget.h |   39 +
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 GUI/Qt/Windows/.DS_Store                           |  Bin 0 -> 12292 bytes
 GUI/Qt/Windows/AboutDialog.cxx                     |   29 +
 GUI/Qt/Windows/AboutDialog.h                       |   23 +
 GUI/Qt/Windows/AboutDialog.ui                      |  235 +
 GUI/Qt/Windows/DropActionDialog.cxx                |  107 +
 GUI/Qt/Windows/DropActionDialog.h                  |   49 +
 GUI/Qt/Windows/DropActionDialog.ui                 |  252 +
 GUI/Qt/Windows/ImageIODialog.cxx                   |   14 +
 GUI/Qt/Windows/ImageIODialog.h                     |   22 +
 GUI/Qt/Windows/ImageIODialog.ui                    |   68 +
 GUI/Qt/Windows/ImageIOWizard.cxx                   |  758 +++
 GUI/Qt/Windows/ImageIOWizard.h                     |  178 +
 GUI/Qt/Windows/ImageIOWizardSummaryPage.ui         |   19 +
 GUI/Qt/Windows/LabelEditorDialog.cxx               |  198 +
 GUI/Qt/Windows/LabelEditorDialog.h                 |   48 +
 GUI/Qt/Windows/LabelEditorDialog.ui                |  780 +++
 GUI/Qt/Windows/LabelSelectionPopup.cxx             |  114 +
 GUI/Qt/Windows/LabelSelectionPopup.h               |   41 +
 GUI/Qt/Windows/LabelSelectionPopup.ui              |  141 +
 GUI/Qt/Windows/LayerInspectorDialog.cxx            |  433 ++
 GUI/Qt/Windows/LayerInspectorDialog.h              |   85 +
 GUI/Qt/Windows/LayerInspectorDialog.ui             |  291 +
 GUI/Qt/Windows/MainControlPanel.cxx                |  238 +
 GUI/Qt/Windows/MainControlPanel.h                  |   53 +
 GUI/Qt/Windows/MainControlPanel.ui                 |  476 ++
 GUI/Qt/Windows/MainImageWindow.cxx                 | 1634 +++++
 GUI/Qt/Windows/MainImageWindow.h                   |  351 +
 GUI/Qt/Windows/MainImageWindow.ui                  | 1381 ++++
 .../MeshExportWizard/MeshExportBrowsePage.cxx      |  104 +
 .../MeshExportWizard/MeshExportBrowsePage.h        |   32 +
 .../MeshExportWizard/MeshExportBrowsePage.ui       |   58 +
 .../MeshExportWizard/MeshExportModePage.cxx        |   44 +
 .../Windows/MeshExportWizard/MeshExportModePage.h  |   30 +
 .../Windows/MeshExportWizard/MeshExportModePage.ui |  161 +
 .../Windows/MeshExportWizard/MeshExportWizard.cxx  |   21 +
 GUI/Qt/Windows/MeshExportWizard/MeshExportWizard.h |   29 +
 .../Windows/MeshExportWizard/MeshExportWizard.ui   |   46 +
 GUI/Qt/Windows/PreferencesDialog.cxx               |  269 +
 GUI/Qt/Windows/PreferencesDialog.h                 |   61 +
 GUI/Qt/Windows/PreferencesDialog.ui                | 1488 +++++
 GUI/Qt/Windows/QtStyles.cxx                        |   97 +
 GUI/Qt/Windows/QtStyles.h                          |   38 +
 GUI/Qt/Windows/ReorientImageDialog.cxx             |  105 +
 GUI/Qt/Windows/ReorientImageDialog.h               |   46 +
 GUI/Qt/Windows/ReorientImageDialog.ui              |  634 ++
 GUI/Qt/Windows/ResampleDialog.cxx                  |   97 +
 GUI/Qt/Windows/ResampleDialog.h                    |   40 +
 GUI/Qt/Windows/ResampleDialog.ui                   |  463 ++
 GUI/Qt/Windows/SaveModifiedLayersDialog.cxx        |  247 +
 GUI/Qt/Windows/SaveModifiedLayersDialog.h          |   96 +
 GUI/Qt/Windows/SaveModifiedLayersDialog.ui         |   60 +
 GUI/Qt/Windows/SimpleFileDialogWithHistory.cxx     |   73 +
 GUI/Qt/Windows/SimpleFileDialogWithHistory.h       |   47 +
 GUI/Qt/Windows/SimpleFileDialogWithHistory.ui      |   93 +
 GUI/Qt/Windows/SnakeParameterDialog.cxx            |  218 +
 GUI/Qt/Windows/SnakeParameterDialog.h              |   46 +
 GUI/Qt/Windows/SnakeParameterDialog.ui             | 1019 +++
 GUI/Qt/Windows/SpeedImageDialog.cxx                |  158 +
 GUI/Qt/Windows/SpeedImageDialog.h                  |   69 +
 GUI/Qt/Windows/SpeedImageDialog.ui                 | 1260 ++++
 GUI/Qt/Windows/SplashPanel.cxx                     |   16 +
 GUI/Qt/Windows/SplashPanel.h                       |   22 +
 GUI/Qt/Windows/SplashPanel.ui                      |  154 +
 GUI/Qt/Windows/StatisticsDialog.cxx                |  163 +
 GUI/Qt/Windows/StatisticsDialog.h                  |   44 +
 GUI/Qt/Windows/StatisticsDialog.ui                 |  125 +
 GUI/Qt/main.cxx                                    |  698 ++
 GUI/Renderer/AbstractRenderer.cxx                  |   13 +
 GUI/Renderer/AbstractRenderer.h                    |   62 +
 GUI/Renderer/AbstractVTKRenderer.cxx               |  127 +
 GUI/Renderer/AbstractVTKRenderer.h                 |   65 +
 GUI/Renderer/AbstractVTKSceneRenderer.cxx          |   29 +
 GUI/Renderer/AbstractVTKSceneRenderer.h            |   49 +
 GUI/Renderer/ColorMapRenderer.cxx                  |  223 +
 GUI/Renderer/ColorMapRenderer.h                    |   33 +
 GUI/Renderer/CrosshairsRenderer.cxx                |   95 +
 GUI/Renderer/CrosshairsRenderer.h                  |   55 +
 GUI/Renderer/EdgePreprocessingSettingsRenderer.cxx |   87 +
 GUI/Renderer/EdgePreprocessingSettingsRenderer.h   |   44 +
 GUI/Renderer/GLToPNG.cxx                           |   92 +
 GUI/Renderer/GLToPNG.h                             |   58 +
 GUI/Renderer/GMMRenderer.cxx                       |  177 +
 GUI/Renderer/GMMRenderer.h                         |   46 +
 GUI/Renderer/Generic3DRenderer.cxx                 |  796 +++
 GUI/Renderer/Generic3DRenderer.h                   |  157 +
 GUI/Renderer/GenericSliceRenderer.cxx              |  594 ++
 GUI/Renderer/GenericSliceRenderer.h                |  149 +
 GUI/Renderer/IntensityCurveVTKRenderer.cxx         |  578 ++
 GUI/Renderer/IntensityCurveVTKRenderer.h           |   63 +
 GUI/Renderer/LayerHistogramPlotAssembly.cxx        |  101 +
 GUI/Renderer/LayerHistogramPlotAssembly.h          |   67 +
 GUI/Renderer/OpenGLSliceTexture.cxx                |  252 +
 GUI/Renderer/OpenGLSliceTexture.h                  |  144 +
 GUI/Renderer/OrientationGraphicRenderer.cxx        |   93 +
 GUI/Renderer/OrientationGraphicRenderer.h          |   40 +
 .../Reorient/AbstractScannerHelper.cxx             |   29 +
 .../Reorient/AbstractScannerHelper.h               |   28 +
 .../OrientationWidget/Reorient/AxesWidget.cxx      |  105 +
 .../OrientationWidget/Reorient/AxesWidget.h        |   36 +
 .../Reorient/PolyDataAlgorithm2ActorPipe.cxx       |   37 +
 .../Reorient/PolyDataAlgorithm2ActorPipe.h         |   28 +
 .../OrientationWidget/Reorient/ReorientProps.cxx   |  103 +
 .../OrientationWidget/Reorient/ReorientProps.h     |   36 +
 .../OrientationWidget/Reorient/ScannedHuman.cxx    |  131 +
 .../OrientationWidget/Reorient/ScannedHuman.h      |   45 +
 .../OrientationWidget/Reorient/ScanningROI.cxx     |  320 +
 .../OrientationWidget/Reorient/ScanningROI.h       |   75 +
 .../Test_OrientationWidget/CMakeLists.txt          |   78 +
 .../OrientationWidgetGUI.cxx                       |  149 +
 .../Test_OrientationWidget/OrientationWidgetGUI.h  |   39 +
 .../Test_OrientationWidget/OrientationWidgetGUI.ui |  586 ++
 .../Test_OrientationWidget/main.cxx                |   27 +
 .../Test_ReorientGUI/CMakeLists.txt                |   57 +
 .../Test_ReorientGUI/Reorient.cxx                  |   65 +
 .../OrientationWidget/Test_ReorientGUI/Reorient.h  |   35 +
 .../Test_ReorientGUI/ReorientGUI.cxx               |  136 +
 .../Test_ReorientGUI/ReorientGUI.h                 |   34 +
 .../Test_ReorientGUI/ReorientGUI.ui                |  582 ++
 .../OrientationWidget/Test_ReorientGUI/main.cxx    |   23 +
 GUI/Renderer/PaintbrushRenderer.cxx                |  124 +
 GUI/Renderer/PaintbrushRenderer.h                  |   31 +
 GUI/Renderer/PolygonDrawingRenderer.cxx            |  220 +
 GUI/Renderer/PolygonDrawingRenderer.h              |   37 +
 GUI/Renderer/PolygonScanConvert.cxx                |  177 +
 GUI/Renderer/PolygonScanConvert.h                  |   94 +
 GUI/Renderer/SliceWindowDecorationRenderer.cxx     |  280 +
 GUI/Renderer/SliceWindowDecorationRenderer.h       |   30 +
 GUI/Renderer/SnakeModeRenderer.cxx                 |  162 +
 GUI/Renderer/SnakeModeRenderer.h                   |   31 +
 GUI/Renderer/SnakeParameterPreviewRenderer.cxx     |  189 +
 GUI/Renderer/SnakeParameterPreviewRenderer.h       |   58 +
 GUI/Renderer/SnakeROIRenderer.cxx                  |   79 +
 GUI/Renderer/SnakeROIRenderer.h                    |   27 +
 GUI/Renderer/ThresholdSettingsRenderer.cxx         |  115 +
 GUI/Renderer/ThresholdSettingsRenderer.h           |   47 +
 GUI/Renderer/Window3DPicker.cxx                    |  119 +
 GUI/Renderer/Window3DPicker.h                      |   34 +
 Logic/Common/ColorLabel.h                          |   34 +-
 Logic/Common/ColorLabelTable.cxx                   |  371 +-
 Logic/Common/ColorLabelTable.h                     |   97 +-
 Logic/Common/ColorMap.cxx                          |  325 +-
 Logic/Common/ColorMap.h                            |  191 +-
 Logic/Common/ColorMapPresetManager.cxx             |    5 +
 Logic/Common/ColorMapPresetManager.h               |   38 +
 Logic/Common/IRISDisplayGeometry.cxx               |   66 +
 Logic/Common/IRISDisplayGeometry.h                 |   41 +
 Logic/Common/ImageCoordinateGeometry.cxx           |  150 +-
 Logic/Common/ImageCoordinateGeometry.h             |   65 +-
 Logic/Common/ImageRayIntersectionFinder.h          |    2 +-
 Logic/Common/ImageRayIntersectionFinder.txx        |    2 +-
 Logic/Common/LabelUseHistory.cxx                   |  153 +
 Logic/Common/LabelUseHistory.h                     |   73 +
 Logic/Common/MetaDataAccess.cxx                    |  159 +
 Logic/Common/MetaDataAccess.h                      |   35 +
 Logic/Common/SNAPAppearanceSettings.cxx            |  401 ++
 Logic/Common/SNAPAppearanceSettings.h              |  222 +
 Logic/Common/SNAPRegistryIO.cxx                    |  375 +-
 Logic/Common/SNAPRegistryIO.h                      |   48 +-
 Logic/Common/SNAPSegmentationROISettings.cxx       |   44 +-
 Logic/Common/SNAPSegmentationROISettings.h         |   37 +-
 Logic/Common/SegmentationStatistics.cxx            |  217 +-
 Logic/Common/SegmentationStatistics.h              |   39 +-
 Logic/Framework/DefaultBehaviorSettings.cxx        |   32 +
 Logic/Framework/DefaultBehaviorSettings.h          |   66 +
 Logic/Framework/GenericImageData.cxx               |  453 +-
 Logic/Framework/GenericImageData.h                 |  245 +-
 Logic/Framework/GlobalState.cxx                    |  196 +-
 Logic/Framework/GlobalState.h                      |  443 +-
 Logic/Framework/IRISApplication.cxx                | 1914 +++++-
 Logic/Framework/IRISApplication.h                  |  511 +-
 Logic/Framework/IRISImageData.cxx                  |   35 +-
 Logic/Framework/IRISImageData.h                    |   39 +-
 Logic/Framework/ImageIODelegates.cxx               |  259 +
 Logic/Framework/ImageIODelegates.h                 |  183 +
 Logic/Framework/LayerAssociation.h                 |   80 +
 Logic/Framework/LayerAssociation.txx               |  112 +
 Logic/Framework/LayerIterator.cxx                  |  219 +
 Logic/Framework/LayerIterator.h                    |   97 +
 Logic/Framework/SNAPImageData.cxx                  |  342 +-
 Logic/Framework/SNAPImageData.h                    |  105 +-
 Logic/Framework/UndoDataManager.h                  |   15 +
 Logic/Framework/UndoDataManager.txx                |   12 +
 Logic/ImageWrapper/CPUImageToGPUImageFilter.h      |  106 +
 Logic/ImageWrapper/CPUImageToGPUImageFilter.hxx    |   96 +
 Logic/ImageWrapper/CommonRepresentationPolicy.cxx  |  101 +
 Logic/ImageWrapper/CommonRepresentationPolicy.h    |  107 +
 Logic/ImageWrapper/DisplayMappingPolicy.cxx        |  975 +++
 Logic/ImageWrapper/DisplayMappingPolicy.h          |  552 ++
 Logic/ImageWrapper/GreyImageWrapper.cxx            |  202 -
 Logic/ImageWrapper/GreyImageWrapper.h              |  226 -
 Logic/ImageWrapper/GuidedNativeImageIO.cxx         | 1022 ++-
 Logic/ImageWrapper/GuidedNativeImageIO.h           |  186 +-
 Logic/ImageWrapper/ImageIORoutines.h               |   82 -
 Logic/ImageWrapper/ImageWrapper.cxx                | 1371 ++++
 Logic/ImageWrapper/ImageWrapper.h                  |  602 +-
 Logic/ImageWrapper/ImageWrapper.txx                |  565 --
 Logic/ImageWrapper/ImageWrapperBase.cxx            |   97 +
 Logic/ImageWrapper/ImageWrapperBase.h              |  545 ++
 Logic/ImageWrapper/ImageWrapperTraits.cxx          |    2 +
 Logic/ImageWrapper/ImageWrapperTraits.h            |  247 +
 Logic/ImageWrapper/InputSelectionImageFilter.cxx   |   61 +
 Logic/ImageWrapper/InputSelectionImageFilter.h     |   71 +
 Logic/ImageWrapper/LabelImageWrapper.cxx           |  154 -
 Logic/ImageWrapper/LabelImageWrapper.h             |  154 -
 Logic/ImageWrapper/LabelToRGBAFilter.h             |   39 +-
 Logic/ImageWrapper/LevelSetImageWrapper.cxx        |  141 -
 Logic/ImageWrapper/LevelSetImageWrapper.h          |  116 -
 Logic/ImageWrapper/NativeIntensityMappingPolicy.h  |   83 +
 Logic/ImageWrapper/RGBImageWrapper.cxx             |   98 -
 Logic/ImageWrapper/RGBImageWrapper.h               |   90 -
 Logic/ImageWrapper/ScalarImageHistogram.cxx        |  126 +
 Logic/ImageWrapper/ScalarImageHistogram.h          |   90 +
 Logic/ImageWrapper/ScalarImageWrapper.cxx          |  357 +
 Logic/ImageWrapper/ScalarImageWrapper.h            |  242 +-
 Logic/ImageWrapper/ScalarImageWrapper.txx          |  269 -
 Logic/ImageWrapper/SpeedColorMap.cxx               |  105 -
 Logic/ImageWrapper/SpeedColorMap.h                 |  134 -
 Logic/ImageWrapper/SpeedImageWrapper.cxx           |  219 -
 Logic/ImageWrapper/SpeedImageWrapper.h             |  241 -
 Logic/ImageWrapper/ThreadedHistogramImageFilter.h  |  137 +
 .../ImageWrapper/ThreadedHistogramImageFilter.hxx  |  167 +
 Logic/ImageWrapper/UnaryValueToValueFilter.h       |   73 +
 Logic/ImageWrapper/VectorImageWrapper.cxx          |  477 ++
 Logic/ImageWrapper/VectorImageWrapper.h            |  245 +-
 Logic/ImageWrapper/VectorImageWrapper.txx          |   42 -
 Logic/ImageWrapper/VectorToScalarImageAccessor.h   |  201 +
 Logic/LevelSet/SNAPAdvectionFieldImageFilter.h     |    8 +-
 Logic/LevelSet/SNAPAdvectionFieldImageFilter.txx   |    2 +-
 Logic/LevelSet/SNAPLevelSetDriver.cxx              |  351 -
 Logic/LevelSet/SNAPLevelSetDriver.h                |   49 +-
 Logic/LevelSet/SNAPLevelSetDriver.txx              |   85 +-
 Logic/LevelSet/SNAPLevelSetFunction.h              |  236 +-
 Logic/LevelSet/SNAPLevelSetFunction.txx            |  274 +-
 Logic/LevelSet/SnakeParameters.cxx                 |    2 +-
 Logic/LevelSet/SnakeParameters.h                   |    4 +
 Logic/LevelSet/SnakeParametersPreviewPipeline.cxx  |  630 ++
 Logic/LevelSet/SnakeParametersPreviewPipeline.h    |  230 +
 Logic/Mesh/GuidedMeshIO.cxx                        |   13 +-
 Logic/Mesh/GuidedMeshIO.h                          |    2 +-
 Logic/Mesh/IRISMeshPipeline.cxx                    |  211 -
 Logic/Mesh/IRISMeshPipeline.h                      |  135 -
 Logic/Mesh/LevelSetMeshPipeline.cxx                |   38 +-
 Logic/Mesh/LevelSetMeshPipeline.h                  |   34 +-
 .../Mesh}/MeshExportSettings.h                     |    0
 Logic/Mesh/MeshManager.cxx                         |  443 ++
 Logic/Mesh/MeshManager.h                           |  206 +
 Logic/Mesh/MeshObject.cxx                          |  741 ---
 Logic/Mesh/MeshObject.h                            |  265 -
 Logic/Mesh/MeshOptions.cxx                         |   55 +-
 Logic/Mesh/MeshOptions.h                           |  172 +-
 Logic/Mesh/MultiLabelMeshPipeline.cxx              |  392 ++
 Logic/Mesh/MultiLabelMeshPipeline.h                |  187 +
 Logic/Mesh/VTKMeshPipeline.cxx                     |   88 +-
 Logic/Mesh/VTKMeshPipeline.h                       |   12 +-
 Logic/Preprocessing/EdgePreprocessingImageFilter.h |  139 +-
 .../Preprocessing/EdgePreprocessingImageFilter.txx |  176 +-
 Logic/Preprocessing/EdgePreprocessingSettings.cxx  |   42 +-
 Logic/Preprocessing/EdgePreprocessingSettings.h    |   39 +-
 Logic/Preprocessing/GMM/EMGaussianMixtures.cxx     |  471 ++
 Logic/Preprocessing/GMM/EMGaussianMixtures.h       |   70 +
 Logic/Preprocessing/GMM/Gaussian.cxx               |  132 +
 Logic/Preprocessing/GMM/Gaussian.h                 |   51 +
 Logic/Preprocessing/GMM/GaussianMixtureModel.cxx   |  182 +
 Logic/Preprocessing/GMM/GaussianMixtureModel.h     |   67 +
 Logic/Preprocessing/GMM/KMeansPlusPlus.cxx         |  180 +
 Logic/Preprocessing/GMM/KMeansPlusPlus.h           |   28 +
 Logic/Preprocessing/GMM/UnsupervisedClustering.cxx |  263 +
 Logic/Preprocessing/GMM/UnsupervisedClustering.h   |   65 +
 Logic/Preprocessing/GMMClassifyImageFilter.h       |   75 +
 Logic/Preprocessing/GMMClassifyImageFilter.txx     |  161 +
 Logic/Preprocessing/ImageCollectionToImageFilter.h |  301 +
 .../PreprocessingFilterConfigTraits.cxx            |  252 +
 .../PreprocessingFilterConfigTraits.h              |  158 +
 .../RandomForest/Library/classification.h          |  167 +
 .../RandomForest/Library/classifier.h              |  180 +
 Logic/Preprocessing/RandomForest/Library/data.h    |  360 +
 Logic/Preprocessing/RandomForest/Library/forest.h  |  114 +
 Logic/Preprocessing/RandomForest/Library/imageio.h |  149 +
 .../RandomForest/Library/linearalgebra.h           |  227 +
 Logic/Preprocessing/RandomForest/Library/node.h    |  302 +
 Logic/Preprocessing/RandomForest/Library/random.h  |   45 +
 .../RandomForest/Library/statistics.h              |  567 ++
 Logic/Preprocessing/RandomForest/Library/trainer.h |  325 +
 .../RandomForest/Library/trainingcontext.h         |  140 +
 Logic/Preprocessing/RandomForest/Library/tree.h    |  563 ++
 Logic/Preprocessing/RandomForest/Library/type.h    |   16 +
 Logic/Preprocessing/RandomForest/Library/utility.h |  142 +
 .../RandomForest/RFClassificationEngine.cxx        |  194 +
 .../RandomForest/RFClassificationEngine.h          |   70 +
 .../RandomForest/RandomForestClassifier.cxx        |   51 +
 .../RandomForest/RandomForestClassifier.h          |   75 +
 .../RandomForestClassifyImageFilter.h              |   83 +
 .../RandomForestClassifyImageFilter.txx            |  172 +
 Logic/Preprocessing/SlicePreviewFilterWrapper.h    |  188 +
 Logic/Preprocessing/SlicePreviewFilterWrapper.txx  |  203 +
 .../SmoothBinaryThresholdImageFilter.h             |  153 +-
 .../SmoothBinaryThresholdImageFilter.txx           |  169 +-
 Logic/Preprocessing/ThresholdSettings.cxx          |  148 +-
 Logic/Preprocessing/ThresholdSettings.h            |   84 +-
 Logic/Slicing/IRISSlicer.h                         |   56 +-
 Logic/Slicing/IRISSlicer.txx                       |  474 +-
 Logic/Slicing/IntensityCurveInterface.h            |   22 +-
 Logic/Slicing/IntensityCurveVTK.cxx                |   21 +
 Logic/Slicing/IntensityCurveVTK.h                  |    7 +-
 .../IntensityToColorLookupTableImageFilter.cxx     |  244 +
 .../IntensityToColorLookupTableImageFilter.h       |  190 +
 .../Slicing/LookupTableIntensityMappingFilter.cxx  |   93 +
 Logic/Slicing/LookupTableIntensityMappingFilter.h  |   63 +
 Logic/Slicing/LookupTableTraits.h                  |  114 +
 ...omponentImageToScalarLookupTableImageFilter.cxx |  136 +
 ...iComponentImageToScalarLookupTableImageFilter.h |   81 +
 .../RGBALookupTableIntensityMappingFilter.cxx      |   66 +
 .../RGBALookupTableIntensityMappingFilter.h        |   55 +
 Logic/Slicing/UnaryFunctorCache.h                  |  199 -
 Logic/Slicing/UnaryFunctorCache.txx                |  103 -
 ReleaseNotes.txt                                   |  420 +-
 Testing/GUI/Qt/SNAPTestQt.cxx                      |  481 ++
 Testing/GUI/Qt/SNAPTestQt.h                        |  118 +
 Testing/GUI/Qt/Scripts/test_Library.js             |  101 +
 Testing/GUI/Qt/Scripts/test_ProbeIntensity.js      |   16 +
 Testing/GUI/Qt/Scripts/test_RandomForest.js        |   89 +
 Testing/GUI/Qt/Scripts/test_RegionCompetition.js   |   56 +
 Testing/GUI/Qt/Scripts/test_Workspace.js           |   40 +
 Testing/GUI/Qt/TestingScripts.qrc                  |    9 +
 Testing/Logic/SNAPTestDriver.cxx                   |  256 +
 Testing/{ => Logic}/SNAPTestDriver.h               |    0
 Testing/{ => Logic}/TestBase.h                     |    0
 Testing/{ => Logic}/TestCompareLevelSets.cxx       |    0
 Testing/{ => Logic}/TestCompareLevelSets.h         |    0
 Testing/Logic/TestImageWrapper.h                   |   93 +
 Testing/{ => Logic}/TestMain.cxx                   |    0
 Testing/{ => Logic}/TutorialTest.cxx               |    0
 Testing/SNAPTestDriver.cxx                         |  256 -
 Testing/TestData/MRIcrop-orig.gipl.gz              |  Bin 0 -> 399537 bytes
 Testing/TestData/MRIcrop-seg.gipl.gz               |  Bin 0 -> 13417 bytes
 Testing/TestData/MRIcrop-seg.label                 |   13 +
 Testing/TestData/tensor.itksnap                    |  338 +
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 Testing/TestData/tensor_t1.nii.gz                  |  Bin 0 -> 31807 bytes
 Testing/TestData/tensor_tr.nii.gz                  |  Bin 0 -> 90432 bytes
 Testing/TestImageWrapper.h                         |   97 -
 UserInterface/BasicComponents/ColorMapBox.cxx      |   96 -
 UserInterface/BasicComponents/ColorMapBox.h        |   67 -
 UserInterface/BasicComponents/ColorMapWidget.cxx   |  420 --
 UserInterface/BasicComponents/ColorMapWidget.h     |  112 -
 UserInterface/BasicComponents/FLTKCanvas.cxx       |  232 -
 UserInterface/BasicComponents/FLTKCanvas.h         |  113 -
 UserInterface/BasicComponents/FLTKEvent.h          |  101 -
 .../BasicComponents/FLTKWidgetActivationManager.h  |  324 -
 UserInterface/BasicComponents/FunctionPlot2D.cxx   |  178 -
 UserInterface/BasicComponents/FunctionPlot2D.h     |  141 -
 .../BasicComponents/FunctionPlot2DBox.cxx          |   81 -
 UserInterface/BasicComponents/FunctionPlot2DBox.h  |   64 -
 .../BasicComponents/IntensityCurveBox.cxx          |  633 --
 UserInterface/BasicComponents/IntensityCurveBox.h  |  181 -
 UserInterface/BasicComponents/InteractionMode.h    |  157 -
 .../BasicComponents/InteractionModeClient.cxx      |  104 -
 .../BasicComponents/InteractionModeClient.h        |   81 -
 UserInterface/BasicComponents/MetaDataTable.cxx    |  313 -
 UserInterface/BasicComponents/MetaDataTable.h      |   75 -
 .../BasicComponents/RecursiveInteractionMode.cxx   |  144 -
 .../BasicComponents/RecursiveInteractionMode.h     |   60 -
 .../BasicComponents/SNAPFormattedOutput.h          |   72 -
 UserInterface/BasicComponents/SNAPValueOutput.h    |   68 -
 .../BasicComponents/SnakeParametersPreviewBox.cxx  |  346 -
 .../BasicComponents/SnakeParametersPreviewBox.h    |  125 -
 .../SnakeParametersPreviewPipeline.cxx             |  628 --
 .../SnakeParametersPreviewPipeline.h               |  219 -
 UserInterface/BasicComponents/StatisticsTable.cxx  |  220 -
 UserInterface/BasicComponents/StatisticsTable.h    |   69 -
 UserInterface/Common/SNAPAppearanceSettings.cxx    |  422 --
 UserInterface/Common/SNAPAppearanceSettings.h      |  220 -
 UserInterface/Common/SNAPCommonUI.h                |   51 -
 UserInterface/ImageIOWizard/Artwork/dollAIR.gif    |  Bin 7856 -> 0 bytes
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 UserInterface/ImageIOWizard/ImageIOWizard.fl       |  421 --
 UserInterface/ImageIOWizard/ImageIOWizardBase.h    |   69 -
 UserInterface/ImageIOWizard/ImageIOWizardLogic.cxx | 1194 ----
 UserInterface/ImageIOWizard/ImageIOWizardLogic.h   |  329 -
 .../ImageIOWizard/RestrictedImageIOWizardLogic.cxx |  165 -
 .../ImageIOWizard/RestrictedImageIOWizardLogic.h   |   85 -
 UserInterface/MainComponents/AppearanceDialogUI.fl |  518 --
 .../MainComponents/AppearanceDialogUIBase.h        |   64 -
 .../MainComponents/AppearanceDialogUILogic.cxx     |  683 --
 .../MainComponents/AppearanceDialogUILogic.h       |  117 -
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 UserInterface/MainComponents/HelpViewer.fl         |   40 -
 UserInterface/MainComponents/HelpViewerBase.h      |   48 -
 UserInterface/MainComponents/HelpViewerLogic.cxx   |  188 -
 UserInterface/MainComponents/HelpViewerLogic.h     |   86 -
 UserInterface/MainComponents/LabelEditorUI.fl      |  214 -
 UserInterface/MainComponents/LabelEditorUIBase.h   |   61 -
 .../MainComponents/LabelEditorUILogic.cxx          |  644 --
 UserInterface/MainComponents/LabelEditorUILogic.h  |  103 -
 UserInterface/MainComponents/LayerInspectorUI.fl   |  412 --
 .../MainComponents/LayerInspectorUIBase.h          |   79 -
 .../MainComponents/LayerInspectorUILogic.cxx       | 1115 ----
 .../MainComponents/LayerInspectorUILogic.h         |  146 -
 UserInterface/MainComponents/PreprocessingUI.fl    |  163 -
 UserInterface/MainComponents/PreprocessingUIBase.h |   67 -
 .../MainComponents/PreprocessingUILogic.cxx        |  778 ---
 .../MainComponents/PreprocessingUILogic.h          |  149 -
 UserInterface/MainComponents/ReorientImageUI.fl    |  219 -
 UserInterface/MainComponents/ReorientImageUIBase.h |   52 -
 .../MainComponents/ReorientImageUILogic.cxx        |  320 -
 .../MainComponents/ReorientImageUILogic.h          |   83 -
 UserInterface/MainComponents/ResizeRegionDialog.fl |  251 -
 .../MainComponents/ResizeRegionDialogBase.h        |   47 -
 .../MainComponents/ResizeRegionDialogLogic.cxx     |  182 -
 .../MainComponents/ResizeRegionDialogLogic.h       |   76 -
 .../MainComponents/RestoreSettingsDialog.fl        |   70 -
 .../MainComponents/RestoreSettingsDialogBase.h     |   46 -
 .../MainComponents/RestoreSettingsDialogLogic.cxx  |  159 -
 .../MainComponents/RestoreSettingsDialogLogic.h    |  109 -
 UserInterface/MainComponents/SimpleFileDialog.fl   |   41 -
 .../MainComponents/SimpleFileDialogBase.h          |   48 -
 .../MainComponents/SimpleFileDialogLogic.cxx       |  203 -
 .../MainComponents/SimpleFileDialogLogic.h         |  155 -
 UserInterface/MainComponents/SnakeParametersUI.fl  |  435 --
 .../MainComponents/SnakeParametersUIBase.h         |   77 -
 .../MainComponents/SnakeParametersUILogic.cxx      |  751 ---
 .../MainComponents/SnakeParametersUILogic.h        |  165 -
 UserInterface/MainComponents/UserInterface.fl      | 1942 ------
 UserInterface/MainComponents/UserInterfaceBase.h   |  330 -
 .../MainComponents/UserInterfaceLogic.cxx          | 7030 --------------------
 UserInterface/MainComponents/UserInterfaceLogic.h  | 1543 -----
 UserInterface/MeshIOWizard/MeshIOWizardUI.fl       |  128 -
 UserInterface/MeshIOWizard/MeshIOWizardUIBase.h    |   61 -
 UserInterface/MeshIOWizard/MeshIOWizardUILogic.cxx |  426 --
 UserInterface/MeshIOWizard/MeshIOWizardUILogic.h   |  133 -
 UserInterface/SNAPMain.cxx                         |  777 ---
 .../SliceWindow/AnnotationInteractionMode.cxx      |  240 -
 .../SliceWindow/AnnotationInteractionMode.h        |   87 -
 .../SliceWindow/BubblesInteractionMode.cxx         |  191 -
 UserInterface/SliceWindow/BubblesInteractionMode.h |   58 -
 .../SliceWindow/CrosshairsInteractionMode.cxx      |  431 --
 .../SliceWindow/CrosshairsInteractionMode.h        |   99 -
 UserInterface/SliceWindow/GLToPNG.cxx              |  100 -
 UserInterface/SliceWindow/GLToPNG.h                |   60 -
 UserInterface/SliceWindow/GenericSliceWindow.cxx   |  950 ---
 UserInterface/SliceWindow/GenericSliceWindow.h     |  361 -
 UserInterface/SliceWindow/IRISSliceWindow.cxx      |  300 -
 UserInterface/SliceWindow/IRISSliceWindow.h        |  185 -
 UserInterface/SliceWindow/OpenGLSliceTexture.cxx   |  238 -
 UserInterface/SliceWindow/OpenGLSliceTexture.h     |  150 -
 .../SliceWindow/PaintbrushInteractionMode.cxx      |  760 ---
 .../SliceWindow/PaintbrushInteractionMode.h        |  101 -
 UserInterface/SliceWindow/PolygonDrawing.cxx       | 1399 ----
 UserInterface/SliceWindow/PolygonDrawing.h         |  246 -
 .../SliceWindow/PolygonInteractionMode.cxx         |  113 -
 UserInterface/SliceWindow/PolygonInteractionMode.h |  108 -
 UserInterface/SliceWindow/PolygonScanConvert.cxx   |  177 -
 UserInterface/SliceWindow/PolygonScanConvert.h     |   94 -
 .../SliceWindow/PopupButtonInteractionMode.cxx     |  120 -
 .../SliceWindow/PopupButtonInteractionMode.h       |   56 -
 .../SliceWindow/RegionInteractionMode.cxx          |  350 -
 UserInterface/SliceWindow/RegionInteractionMode.h  |   94 -
 UserInterface/SliceWindow/SNAPSliceWindow.cxx      |  179 -
 UserInterface/SliceWindow/SNAPSliceWindow.h        |   85 -
 .../SliceWindow/SliceWindowCoordinator.cxx         |  239 -
 UserInterface/SliceWindow/SliceWindowCoordinator.h |  141 -
 .../SliceWindow/ThumbnailInteractionMode.cxx       |  124 -
 .../SliceWindow/ThumbnailInteractionMode.h         |   64 -
 .../SliceWindow/ZoomPanInteractionMode.cxx         |  137 -
 UserInterface/SliceWindow/ZoomPanInteractionMode.h |   67 -
 UserInterface/Window3D/Trackball.h                 |  129 -
 UserInterface/Window3D/Window3D.cxx                | 1551 -----
 UserInterface/Window3D/Window3D.h                  |  365 -
 .../FLTK/Fl_Native_File_Chooser/.TAR_RELEASE.sh    |   53 -
 Utilities/FLTK/Fl_Native_File_Chooser/CHANGES      |  166 -
 .../FLTK/Fl_Native_File_Chooser/CMakeLists.txt     |    3 -
 Utilities/FLTK/Fl_Native_File_Chooser/COPYING      |  529 --
 Utilities/FLTK/Fl_Native_File_Chooser/CREDITS      |   13 -
 .../FL/Fl_Native_File_Chooser.H                    |   40 -
 .../FL/Fl_Native_File_Chooser_FLTK.H               |   98 -
 .../FL/Fl_Native_File_Chooser_MAC.H                |  138 -
 .../FL/Fl_Native_File_Chooser_WIN32.H              |  108 -
 .../Fl_Native_File_Chooser.cxx                     |   36 -
 .../Fl_Native_File_Chooser_FLTK.cxx                |  374 --
 .../Fl_Native_File_Chooser_MAC.cxx                 |  867 ---
 .../Fl_Native_File_Chooser_WIN32.cxx               |  806 ---
 Utilities/FLTK/Fl_Native_File_Chooser/Makefile     |   68 -
 .../FLTK/Fl_Native_File_Chooser/Makefile-fltk1     |   94 -
 .../Makefile-fltk1.MICROSOFT                       |   65 -
 .../FLTK/Fl_Native_File_Chooser/Makefile-fltk2     |   93 -
 .../Makefile-fltk2.MICROSOFT                       |   62 -
 .../FLTK/Fl_Native_File_Chooser/Makefile.MICROSOFT |   45 -
 Utilities/FLTK/Fl_Native_File_Chooser/README.txt   |  119 -
 Utilities/FLTK/Fl_Native_File_Chooser/TODO         |  318 -
 Utilities/FLTK/Fl_Native_File_Chooser/common.cxx   |   78 -
 .../documentation/Fl_Native_File_Chooser.html      |  361 -
 .../documentation/NativeFileChooser.html           |  361 -
 .../documentation/build-output-FEDORA3.txt         |   30 -
 .../documentation/build-output-MAC.txt             |   26 -
 .../documentation/build-output-WIN32.txt           |   86 -
 .../documentation/how-to-use.html                  |   69 -
 .../documentation/images/native-small.png          |  Bin 50588 -> 0 bytes
 .../documentation/index.html                       |   34 -
 .../fltk/NativeFileChooser.h                       |   40 -
 .../fltk/NativeFileChooser_FLTK.h                  |  100 -
 .../fltk/NativeFileChooser_MAC.h                   |  142 -
 .../fltk/NativeFileChooser_WIN32.h                 |  113 -
 Utilities/FLTK/Fl_Native_File_Chooser/make.bat     |    2 -
 .../reference/README-natev-mods.txt                |   71 -
 .../reference/REFERENCE-MAC.txt                    |   30 -
 .../reference/erco-merge-trick.cxx                 |   49 -
 .../Fl_Native_File_Chooser/simple-app-fltk2.cxx    |   78 -
 .../simple-app.app/Contents/Info.plist             |   15 -
 .../FLTK/Fl_Native_File_Chooser/simple-app.cxx     |   76 -
 .../Fl_Native_File_Chooser/test-browser-fltk2.cxx  |  299 -
 .../test-browser.app/Contents/Info.plist           |   15 -
 .../FLTK/Fl_Native_File_Chooser/test-browser.cxx   |  304 -
 Utilities/FLTK/Fl_Table/CHANGES                    |  289 -
 Utilities/FLTK/Fl_Table/CMakeLists.txt             |    3 -
 Utilities/FLTK/Fl_Table/COPYING                    |  528 --
 Utilities/FLTK/Fl_Table/CREDITS                    |   27 -
 Utilities/FLTK/Fl_Table/FL/Fl_Table.H              |  451 --
 Utilities/FLTK/Fl_Table/FL/Fl_Table_Row.H          |  150 -
 Utilities/FLTK/Fl_Table/Fl_Table.cxx               | 1218 ----
 Utilities/FLTK/Fl_Table/Fl_Table_Row.cxx           |  317 -
 Utilities/FLTK/Fl_Table/README                     |  106 -
 Utilities/FLTK/Fl_Table/TODO                       |  120 -
 Utilities/MacOS/BundleResources/Info.plist         |   23 +-
 Utilities/MacOS/BundleResources/README.txt         |   19 +
 Utilities/MacOS/BundleResources/background.png     |  Bin 0 -> 16258 bytes
 Utilities/MacOS/BundleResources/dsstore.bin        |  Bin 0 -> 15364 bytes
 Utilities/MacOS/BundleResources/itksnap            |   43 +
 Utilities/Win32/itksnap.rc                         |    1 +
 Utilities/Win32/snaplogo.ico                       |  Bin 0 -> 59222 bytes
 Utilities/licensetemplate.txt                      |   25 +
 944 files changed, 104376 insertions(+), 60135 deletions(-)

diff --cc .gitignore
index 845ca06,252540c..d64a77b
--- a/.gitignore
+++ b/.gitignore
@@@ -1,1 -1,15 +1,16 @@@
- .pc
+ # VIM swap files
+ .*.sw?
+ *.un~
+ 
+ # MACOS files
+ .DS_Store*
+ Thumbs.db
+ 
+ # Backup files
+ *.bak
+ 
+ # Qt Creator stuff
+ CMakeLists.txt.user*
+ CTestConfig.cmake.user*
+ *.autosave
++

-- 
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