[med-svn] r18588 - in trunk/packages/vsearch/trunk/debian: . patches tests
Andreas Tille
tille at moszumanska.debian.org
Mon Jan 19 19:00:42 UTC 2015
Author: tille
Date: 2015-01-19 19:00:42 +0000 (Mon, 19 Jan 2015)
New Revision: 18588
Added:
trunk/packages/vsearch/trunk/debian/createmanpages
trunk/packages/vsearch/trunk/debian/patches/
trunk/packages/vsearch/trunk/debian/patches/hardening.patch
trunk/packages/vsearch/trunk/debian/patches/series
trunk/packages/vsearch/trunk/debian/tests/
trunk/packages/vsearch/trunk/debian/tests/control
trunk/packages/vsearch/trunk/debian/tests/run-unit-test
trunk/packages/vsearch/trunk/debian/vsearch-data.install
trunk/packages/vsearch/trunk/debian/vsearch.1
trunk/packages/vsearch/trunk/debian/vsearch.docs
trunk/packages/vsearch/trunk/debian/vsearch.install
trunk/packages/vsearch/trunk/debian/vsearch.links
trunk/packages/vsearch/trunk/debian/vsearch.manpages
Removed:
trunk/packages/vsearch/trunk/debian/docs
trunk/packages/vsearch/trunk/debian/install
Modified:
trunk/packages/vsearch/trunk/debian/control
trunk/packages/vsearch/trunk/debian/copyright
trunk/packages/vsearch/trunk/debian/rules
Log:
Manpages and autopkgtest (including needed data package)
Modified: trunk/packages/vsearch/trunk/debian/control
===================================================================
--- trunk/packages/vsearch/trunk/debian/control 2015-01-19 18:51:19 UTC (rev 18587)
+++ trunk/packages/vsearch/trunk/debian/control 2015-01-19 19:00:42 UTC (rev 18588)
@@ -26,3 +26,25 @@
than 4GB of memory
- be as accurate or more accurate than usearch
- be as fast or faster than usearch
+
+Package: vsearch-data
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Description: example data for vsearch tool for processing metagenomic sequences
+ Open and free 64-bit multithreaded tool for processing metagenomic sequences,
+ including searching, clustering, chimera detection, dereplication, sorting,
+ masking and shuffling
+ .
+ The aim of this project is to create an alternative to the USEARCH tool
+ developed by Robert C. Edgar (2010). The new tool should:
+ .
+ - have open source code with an appropriate open source license
+ - be free of charge, gratis
+ - have a 64-bit design that handles very large databases and much more
+ than 4GB of memory
+ - be as accurate or more accurate than usearch
+ - be as fast or faster than usearch
+ .
+ This package only contains data to run the vsearch test suite.
+
Modified: trunk/packages/vsearch/trunk/debian/copyright
===================================================================
--- trunk/packages/vsearch/trunk/debian/copyright 2015-01-19 18:51:19 UTC (rev 18587)
+++ trunk/packages/vsearch/trunk/debian/copyright 2015-01-19 19:00:42 UTC (rev 18588)
@@ -672,6 +672,6 @@
Files: debian/*
Copyright: © 2014-2015 Tim Booth <tbooth at ceh.ac.uk>
© 2015 Andreas Tille <tille at debian.org>
-License: GPL-3
+License: GPL-3+
On Debian Systems you can find a copy of the GNU GENERAL PUBLIC LICENSE
at /usr/share/common-licenses/GPL-3.
Added: trunk/packages/vsearch/trunk/debian/createmanpages
===================================================================
--- trunk/packages/vsearch/trunk/debian/createmanpages (rev 0)
+++ trunk/packages/vsearch/trunk/debian/createmanpages 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1,16 @@
+#!/bin/sh
+MANDIR=debian
+mkdir -p $MANDIR
+
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
+
+help2man --no-info --no-discard-stderr \
+ --name='tool for processing metagenomic sequences' \
+ --version-string="$VERSION" vsearch > $MANDIR/vsearch.1
+
+cat <<EOT
+Please enhance the help2man output.
+The following web page might be helpful in doing so:
+ http://liw.fi/manpages/
+EOT
+
Property changes on: trunk/packages/vsearch/trunk/debian/createmanpages
___________________________________________________________________
Added: svn:executable
+ *
Deleted: trunk/packages/vsearch/trunk/debian/docs
===================================================================
--- trunk/packages/vsearch/trunk/debian/docs 2015-01-19 18:51:19 UTC (rev 18587)
+++ trunk/packages/vsearch/trunk/debian/docs 2015-01-19 19:00:42 UTC (rev 18588)
@@ -1 +0,0 @@
-*.html
Deleted: trunk/packages/vsearch/trunk/debian/install
===================================================================
--- trunk/packages/vsearch/trunk/debian/install 2015-01-19 18:51:19 UTC (rev 18587)
+++ trunk/packages/vsearch/trunk/debian/install 2015-01-19 19:00:42 UTC (rev 18588)
@@ -1,3 +0,0 @@
-src/vsearch /usr/bin
-src/vsearch-gz /usr/bin
-src/vsearch-bz /usr/bin
Added: trunk/packages/vsearch/trunk/debian/patches/hardening.patch
===================================================================
--- trunk/packages/vsearch/trunk/debian/patches/hardening.patch (rev 0)
+++ trunk/packages/vsearch/trunk/debian/patches/hardening.patch 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1,37 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Changed: Wed, 14 Jan 2015 10:40:22 +0000
+Description: Propagate hardening options
+
+--- a/src/Makefile.BZLIB
++++ b/src/Makefile.BZLIB
+@@ -28,7 +28,7 @@ WARN=-Wall
+
+ CXX=g++
+ CXXFLAGS=-O3 -DHAVE_BZLIB -msse2 -mtune=core2 -Icityhash $(WARN) $(PROFILING)
+-LINKFLAGS=$(PROFILING)
++LINKFLAGS=$(PROFILING) $(LDFLAGS)
+ LIBS=-lpthread -lbz2
+
+ PROG=vsearch-bz
+--- a/src/Makefile.ZLIB
++++ b/src/Makefile.ZLIB
+@@ -29,7 +29,7 @@ WARN=-Wall
+ CXX=g++
+ CXXFLAGS=-O3 -DHAVE_ZLIB -msse2 -mtune=core2 -Icityhash $(WARN) $(PROFILING)
+ LINKFLAGS=$(PROFILING)
+-LIBS=-lpthread -lz
++LIBS=-lpthread -lz $(LDFLAGS)
+
+ PROG=vsearch-gz
+
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -28,7 +28,7 @@ WARN=-Wall
+
+ CXX=g++
+ CXXFLAGS=-O3 -msse2 -mtune=core2 -Icityhash $(WARN) $(PROFILING)
+-LINKFLAGS=$(PROFILING)
++LINKFLAGS=$(PROFILING) $(LDFLAGS)
+ LIBS=-lpthread
+
+ PROG=vsearch
Added: trunk/packages/vsearch/trunk/debian/patches/series
===================================================================
--- trunk/packages/vsearch/trunk/debian/patches/series (rev 0)
+++ trunk/packages/vsearch/trunk/debian/patches/series 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1 @@
+hardening.patch
Modified: trunk/packages/vsearch/trunk/debian/rules
===================================================================
--- trunk/packages/vsearch/trunk/debian/rules 2015-01-19 18:51:19 UTC (rev 18587)
+++ trunk/packages/vsearch/trunk/debian/rules 2015-01-19 19:00:42 UTC (rev 18588)
@@ -3,8 +3,6 @@
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
-# export DEB_BUILD_MAINT_OPTIONS = hardening=+all
-
pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
%:
@@ -37,5 +35,11 @@
rm -f README.html
rm -f *.out
+override_dh_install:
+ dh_install
+ # tweak path tp vsearch binary in test scripts
+ mkdir -p $(CURDIR)/debian/$(pkg)-data/usr/share/doc/$(pkg)/test
+ for tst in test/*.sh ; do sed 's?VSEARCH=../src/vsearch?VSEARCH=/usr/bin/vsearch?' $${tst} > $(CURDIR)/debian/$(pkg)-data/usr/share/doc/$(pkg)/$${tst} ; done
+
get-orig-source:
uscan --verbose --force-download --repack --compression xz
Added: trunk/packages/vsearch/trunk/debian/tests/control
===================================================================
--- trunk/packages/vsearch/trunk/debian/tests/control (rev 0)
+++ trunk/packages/vsearch/trunk/debian/tests/control 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
Added: trunk/packages/vsearch/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/vsearch/trunk/debian/tests/run-unit-test (rev 0)
+++ trunk/packages/vsearch/trunk/debian/tests/run-unit-test 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1,18 @@
+#!/bin/sh -e
+
+pkg=vsearch
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+mkdir -p data
+cd data && tar xaf /usr/share/doc/${pkg}/examples/simm.tar.gz
+cd ..
+cp -a /usr/share/doc/${pkg}/test .
+cd test
+find . -type f -name "*.gz" -exec gunzip \{\} \;
+for t in *.sh ; do \
+ bash $t v ; \
+done
+
+# rm -f $ADTTMP/*
Added: trunk/packages/vsearch/trunk/debian/vsearch-data.install
===================================================================
--- trunk/packages/vsearch/trunk/debian/vsearch-data.install (rev 0)
+++ trunk/packages/vsearch/trunk/debian/vsearch-data.install 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1,3 @@
+data/simm.tar.gz usr/share/doc/vsearch/examples
+data/Rfam_11_0.fasta usr/share/doc/vsearch/examples
+data/BioMarKs50k.fsa usr/share/doc/vsearch/examples
Added: trunk/packages/vsearch/trunk/debian/vsearch.1
===================================================================
--- trunk/packages/vsearch/trunk/debian/vsearch.1 (rev 0)
+++ trunk/packages/vsearch/trunk/debian/vsearch.1 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1,396 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.46.2.
+.TH VSEARCH "1" "January 2015" "vsearch 1.0.7" "User Commands"
+.SH NAME
+vsearch \- tool for processing metagenomic sequences
+.SH SYNOPSIS
+.B vsearch
+[\fI\,OPTIONS\/\fR]
+.SH DESCRIPTION
+.PP
+64-bit multithreaded tool for processing metagenomic sequences, including
+searching, clustering, chimera detection, dereplication, sorting, masking
+and shuffling
+.PP
+The aim of this project is to create an alternative to the USEARCH tool
+developed by Robert C. Edgar (2010).
+.SH OPTIONS
+.TP
+\fB\-\-help\fR
+display help information
+.TP
+\fB\-\-version\fR
+display version information
+.TP
+\fB\-\-fasta_width\fR INT
+width of FASTA seq lines, 0 for no wrap (80)
+.TP
+\fB\-\-maxseqlength\fR INT
+maximum sequence length (50000)
+.TP
+\fB\-\-minseqlength\fR INT
+min seq length (clust/derep/search: 32, other:1)
+.TP
+\fB\-\-notrunclabels\fR
+do not truncate labels at first space
+.TP
+\fB\-\-threads\fR INT
+number of threads to use, zero for all cores (0)
+.PP
+Alignment options (most searching options also apply)
+.TP
+\fB\-\-allpairs_global\fR FILENAME
+perform global alignment of all sequence pairs
+.TP
+\fB\-\-alnout\fR FILENAME
+filename for human\-readable alignment output
+.TP
+\fB\-\-acceptall\fR
+output all pairwise alignments
+.PP
+Chimera detection options
+.TP
+\fB\-\-abskew\fR REAL
+min abundance ratio of parent vs chimera (2.0)
+.TP
+\fB\-\-alignwidth\fR INT
+width of alignment in uchimealn output (80)
+.TP
+\fB\-\-chimeras\fR FILENAME
+output chimeric sequences to file
+.TP
+\fB\-\-db\fR FILENAME
+reference database for \fB\-\-uchime_ref\fR
+.TP
+\fB\-\-dn\fR REAL
+\&'no' vote pseudo\-count (1.4)
+.TP
+\fB\-\-mindiffs\fR INT
+minimum number of differences in segment (3)
+.TP
+\fB\-\-mindiv\fR REAL
+minimum divergence from closest parent (0.8)
+.TP
+\fB\-\-minh\fR REAL
+minimum score (0.28)
+.TP
+\fB\-\-nonchimeras\fR FILENAME
+output non\-chimeric sequences to file
+.TP
+\fB\-\-self\fR
+exclude identical labels for \fB\-\-uchime_ref\fR
+.TP
+\fB\-\-selfid\fR
+exclude identical sequences for \fB\-\-uchime_ref\fR
+.TP
+\fB\-\-uchime_denovo\fR FILENAME
+detect chimeras de novo
+.TP
+\fB\-\-uchime_ref\fR FILENAME
+detect chimeras using a reference database
+.TP
+\fB\-\-uchimealns\fR FILENAME
+output chimera alignments to file
+.TP
+\fB\-\-uchimeout\fR FILENAME
+output to chimera info to tab\-separated file
+.TP
+\fB\-\-uchimeout5\fR
+make output compatible with uchime version 5
+.TP
+\fB\-\-xn\fR REAL
+\&'no' vote weight (8.0)
+.PP
+Clustering options (most searching options also apply)
+.TP
+\fB\-\-centroids\fR FILENAME
+output centroid sequences to FASTA file
+.TP
+\fB\-\-cluster_fast\fR FILENAME
+cluster sequences fast
+.HP
+\fB\-\-cluster_smallmem\fR FILENAME cluster sequences using a small amount of memory
+.TP
+\fB\-\-clusters\fR STRING
+output each cluster to a separate FASTA file
+.TP
+\fB\-\-consout\fR FILENAME
+output cluster consensus sequences to FASTA file
+.TP
+\fB\-\-cons_truncate\fR
+do not ignore terminal gaps in MSA for consensus
+.TP
+\fB\-\-id\fR REAL
+reject if identity lower
+.TP
+\fB\-\-iddef\fR INT
+id definition, 0\-4=CD\-HIT,all,int,MBL,BLAST (2)
+.TP
+\fB\-\-msaout\fR FILENAME
+output multiple seq. alignments to FASTA file
+.TP
+\fB\-\-qmask\fR none|dust|soft
+mask seqs with dust, soft or no method (dust)
+.TP
+\fB\-\-sizein\fR
+read abundance annotation from input
+.TP
+\fB\-\-sizeout\fR
+write cluster abundances to centroid file
+.TP
+\fB\-\-strand\fR plus|both
+cluster using plus or both strands (plus)
+.TP
+\fB\-\-uc\fR FILENAME
+filename for UCLUST\-like output
+.TP
+\fB\-\-usersort\fR
+indicate that input sequences are presorted
+.PP
+Dereplication options
+.HP
+\fB\-\-derep_fulllength\fR FILENAME dereplicate sequences in the given FASTA file
+.TP
+\fB\-\-maxuniquesize\fR INT
+maximum abundance for output from dereplication
+.TP
+\fB\-\-minuniquesize\fR INT
+minimum abundance for output from dereplication
+.TP
+\fB\-\-output\fR FILENAME
+output FASTA file
+.TP
+\fB\-\-sizein\fR
+read abundance annotation from input
+.TP
+\fB\-\-sizeout\fR
+write abundance annotation to output
+.TP
+\fB\-\-strand\fR plus|both
+dereplicate plus or both strands (plus)
+.TP
+\fB\-\-topn\fR INT
+output just the n most abundant sequences
+.TP
+\fB\-\-uc\fR FILENAME
+filename for UCLUST\-like output
+.PP
+Masking options
+.TP
+\fB\-\-hardmask\fR
+mask by replacing with N instead of lower case
+.TP
+\fB\-\-maskfasta\fR FILENAME
+mask sequences in the given FASTA file
+.TP
+\fB\-\-output\fR FILENAME
+output to specified FASTA file
+.TP
+\fB\-\-qmask\fR none|dust|soft
+mask seqs with dust, soft or no method (dust)
+.PP
+Searching options
+.TP
+\fB\-\-alnout\fR FILENAME
+filename for human\-readable alignment output
+.TP
+\fB\-\-blast6out\fR FILENAME
+filename for blast\-like tab\-separated output
+.TP
+\fB\-\-db\fR FILENAME
+filename for FASTA formatted database for search
+.TP
+\fB\-\-dbmask\fR none|dust|soft
+mask db with dust, soft or no method (dust)
+.TP
+\fB\-\-dbmatched\fR FILENAME
+FASTA file for matching database sequences
+.TP
+\fB\-\-dbnotmatched\fR FILENAME
+FASTA file for non\-matching database sequences
+.TP
+\fB\-\-fastapairs\fR FILENAME
+FASTA file with pairs of query and target
+.TP
+\fB\-\-fulldp\fR
+full dynamic programming alignment (always on)
+.TP
+\fB\-\-gapext\fR STRING
+penalties for gap extension (2I/1E)
+.TP
+\fB\-\-gapopen\fR STRING
+penalties for gap opening (20I/2E)
+.TP
+\fB\-\-hardmask\fR
+mask by replacing with N instead of lower case
+.TP
+\fB\-\-id\fR REAL
+reject if identity lower
+.TP
+\fB\-\-iddef\fR INT
+id definition, 0\-4=CD\-HIT,all,int,MBL,BLAST (2)
+.TP
+\fB\-\-idprefix\fR INT
+reject if first n nucleotides do not match
+.TP
+\fB\-\-idsuffix\fR INT
+reject if last n nucleotides do not match
+.TP
+\fB\-\-leftjust\fR
+reject if terminal gaps at alignment left end
+.TP
+\fB\-\-match\fR INT
+score for match (2)
+.TP
+\fB\-\-matched\fR FILENAME
+FASTA file for matching query sequences
+.TP
+\fB\-\-maxaccepts\fR INT
+number of hits to accept and show per strand (1)
+.TP
+\fB\-\-maxdiffs\fR INT
+reject if more substitutions or indels
+.TP
+\fB\-\-maxgaps\fR INT
+reject if more indels
+.TP
+\fB\-\-maxhits\fR INT
+maximum number of hits to show (unlimited)
+.TP
+\fB\-\-maxid\fR REAL
+reject if identity higher
+.TP
+\fB\-\-maxqsize\fR INT
+reject if query abundance larger
+.TP
+\fB\-\-maxqt\fR REAL
+reject if query/target length ratio higher
+.TP
+\fB\-\-maxrejects\fR INT
+number of non\-matching hits to consider (32)
+.TP
+\fB\-\-maxsizeratio\fR REAL
+reject if query/target abundance ratio higher
+.TP
+\fB\-\-maxsl\fR REAL
+reject if shorter/longer length ratio higher
+.TP
+\fB\-\-maxsubs\fR INT
+reject if more substitutions
+.TP
+\fB\-\-mid\fR REAL
+reject if percent identity lower, ignoring gaps
+.TP
+\fB\-\-mincols\fR INT
+reject if alignment length shorter
+.TP
+\fB\-\-minqt\fR REAL
+reject if query/target length ratio lower
+.TP
+\fB\-\-minsizeratio\fR REAL
+reject if query/target abundance ratio lower
+.TP
+\fB\-\-minsl\fR REAL
+reject if shorter/longer length ratio lower
+.TP
+\fB\-\-mintsize\fR INT
+reject if target abundance lower
+.TP
+\fB\-\-mismatch\fR INT
+score for mismatch (\fB\-4\fR)
+.TP
+\fB\-\-notmatched\fR FILENAME
+FASTA file for non\-matching query sequences
+.TP
+\fB\-\-output_no_hits\fR
+output non\-matching queries to output files
+.TP
+\fB\-\-qmask\fR none|dust|soft
+mask query with dust, soft or no method (dust)
+.TP
+\fB\-\-query_cov\fR REAL
+reject if fraction of query seq. aligned lower
+.TP
+\fB\-\-rightjust\fR
+reject if terminal gaps at alignment right end
+.TP
+\fB\-\-rowlen\fR INT
+width of alignment lines in alnout output (64)
+.TP
+\fB\-\-self\fR
+reject if labels identical
+.TP
+\fB\-\-selfid\fR
+reject if sequences identical
+.TP
+\fB\-\-sizeout\fR
+write abundance annotation to output
+.TP
+\fB\-\-strand\fR plus|both
+search plus or both strands (plus)
+.TP
+\fB\-\-target_cov\fR REAL
+reject if fraction of target seq. aligned lower
+.TP
+\fB\-\-top_hits_only\fR
+output only hits with identity equal to the best
+.TP
+\fB\-\-uc\fR FILENAME
+filename for UCLUST\-like output
+.TP
+\fB\-\-uc_allhits\fR
+show all, not just top hit with uc output
+.TP
+\fB\-\-usearch_global\fR FILENAME
+filename of queries for global alignment search
+.TP
+\fB\-\-userfields\fR STRING
+fields to output in userout file
+.TP
+\fB\-\-userout\fR FILENAME
+filename for user\-defined tab\-separated output
+.TP
+\fB\-\-weak_id\fR REAL
+include aligned hits with >= id; continue search
+.TP
+\fB\-\-wordlength\fR INT
+length of words for database index 3\-15 (8)
+.PP
+Shuffling options
+.TP
+\fB\-\-output\fR FILENAME
+output to specified FASTA file
+.TP
+\fB\-\-seed\fR INT
+seed for PRNG, zero to use random data source (0)
+.TP
+\fB\-\-shuffle\fR FILENAME
+shuffle order of sequences pseudo\-randomly
+.TP
+\fB\-\-topn\fR INT
+output just first n sequences
+.PP
+Sorting options
+.TP
+\fB\-\-maxsize\fR INT
+maximum abundance for sortbysize
+.TP
+\fB\-\-minsize\fR INT
+minimum abundance for sortbysize
+.TP
+\fB\-\-output\fR FILENAME
+output FASTA file
+.TP
+\fB\-\-relabel\fR STRING
+relabel with this prefix string after sorting
+.TP
+\fB\-\-sizeout\fR
+add abundance annotation to output
+.TP
+\fB\-\-sortbylength\fR FILENAME
+sort sequences by length in given FASTA file
+.TP
+\fB\-\-sortbysize\fR FILENAME
+abundance sort sequences in given FASTA file
+.TP
+\fB\-\-topn\fR INT
+output just top n seqs after sorting
Copied: trunk/packages/vsearch/trunk/debian/vsearch.docs (from rev 18586, trunk/packages/vsearch/trunk/debian/docs)
===================================================================
--- trunk/packages/vsearch/trunk/debian/vsearch.docs (rev 0)
+++ trunk/packages/vsearch/trunk/debian/vsearch.docs 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1 @@
+*.html
Copied: trunk/packages/vsearch/trunk/debian/vsearch.install (from rev 18586, trunk/packages/vsearch/trunk/debian/install)
===================================================================
--- trunk/packages/vsearch/trunk/debian/vsearch.install (rev 0)
+++ trunk/packages/vsearch/trunk/debian/vsearch.install 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1,3 @@
+src/vsearch /usr/bin
+src/vsearch-gz /usr/bin
+src/vsearch-bz /usr/bin
Added: trunk/packages/vsearch/trunk/debian/vsearch.links
===================================================================
--- trunk/packages/vsearch/trunk/debian/vsearch.links (rev 0)
+++ trunk/packages/vsearch/trunk/debian/vsearch.links 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1,2 @@
+usr/share/man/man1/vsearch.1.gz usr/share/man/man1/vsearch-bz.1.gz
+usr/share/man/man1/vsearch.1.gz usr/share/man/man1/vsearch-gz.1.gz
Added: trunk/packages/vsearch/trunk/debian/vsearch.manpages
===================================================================
--- trunk/packages/vsearch/trunk/debian/vsearch.manpages (rev 0)
+++ trunk/packages/vsearch/trunk/debian/vsearch.manpages 2015-01-19 19:00:42 UTC (rev 18588)
@@ -0,0 +1 @@
+debian/*.1
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