[med-svn] r18623 - trunk/packages/rna-star/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-01-29 13:26:47 +0000 (Thu, 29 Jan 2015)
New Revision: 18623

Modified:
   trunk/packages/rna-star/trunk/debian/README.Debian
   trunk/packages/rna-star/trunk/debian/changelog
   trunk/packages/rna-star/trunk/debian/control
   trunk/packages/rna-star/trunk/debian/copyright
   trunk/packages/rna-star/trunk/debian/install
Log:
Team maintenance, enhanced description


Modified: trunk/packages/rna-star/trunk/debian/README.Debian
===================================================================
--- trunk/packages/rna-star/trunk/debian/README.Debian	2015-01-29 13:16:51 UTC (rev 18622)
+++ trunk/packages/rna-star/trunk/debian/README.Debian	2015-01-29 13:26:47 UTC (rev 18623)
@@ -1,8 +1,6 @@
 rna-star for Debian
 -------------------
 
-The packaging is not completed. Please adopt.
-
 The package name reflects the project name
 with Google Code - just "star" was considered
 too ambiguous.

Modified: trunk/packages/rna-star/trunk/debian/changelog
===================================================================
--- trunk/packages/rna-star/trunk/debian/changelog	2015-01-29 13:16:51 UTC (rev 18622)
+++ trunk/packages/rna-star/trunk/debian/changelog	2015-01-29 13:26:47 UTC (rev 18623)
@@ -1,5 +1,5 @@
 rna-star (2.4.0i-1) unstable; urgency=low
 
-  * Initial release (Closes: #nnnn)  <nnnn is the bug number of your ITP>
+  * Initial release (Closes: #nnnn)
 
- -- Steffen Moeller <moeller at debian.org>  Wed, 28 Jan 2015 18:15:51 +0100
+ -- Andreas Tille <tille at debian.org>  Thu, 29 Jan 2015 14:18:44 +0100

Modified: trunk/packages/rna-star/trunk/debian/control
===================================================================
--- trunk/packages/rna-star/trunk/debian/control	2015-01-29 13:16:51 UTC (rev 18622)
+++ trunk/packages/rna-star/trunk/debian/control	2015-01-29 13:26:47 UTC (rev 18623)
@@ -1,7 +1,9 @@
 Source: rna-star
 Section: science
 Priority: optional
-Maintainer: Steffen Moeller <moeller at debian.org>
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>,
+           Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 9), libhts-dev
 Standards-Version: 3.9.6
 Homepage: https://code.google.com/p/rna-star/
@@ -10,10 +12,19 @@
 
 Package: rna-star
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: Spliced Transcripts Alignment to a Reference
- STAR is an ultrafast universal RNA-seq aligner.
- .
-  A. Dobin et al, Bioinformatics 2012;
-  doi: 10.1093/bioinformatics/bts635
-  http://bioinformatics.oxfordjournals.org/content/29/1/15
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: ultrafast universal RNA-seq aligner.
+ Spliced Transcripts Alignment to a Reference (STAR) software based on a
+ previously undescribed RNA-seq alignment algorithm that uses sequential
+ maximum mappable seed search in uncompressed suffix arrays followed by
+ seed clustering and stitching procedure. STAR outperforms other aligners
+ by a factor of >50 in mapping speed, aligning to the human genome 550
+ million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
+ while at the same time improving alignment sensitivity and precision. In
+ addition to unbiased de novo detection of canonical junctions, STAR can
+ discover non-canonical splices and chimeric (fusion) transcripts, and is
+ also capable of mapping full-length RNA sequences. Using Roche 454
+ sequencing of reverse transcription polymerase chain reaction amplicons,
+ we experimentally validated 1960 novel intergenic splice junctions with
+ an 80-90% success rate, corroborating the high precision of the STAR
+ mapping strategy.

Modified: trunk/packages/rna-star/trunk/debian/copyright
===================================================================
--- trunk/packages/rna-star/trunk/debian/copyright	2015-01-29 13:16:51 UTC (rev 18622)
+++ trunk/packages/rna-star/trunk/debian/copyright	2015-01-29 13:26:47 UTC (rev 18623)
@@ -13,7 +13,7 @@
  .
  <Including paragraphs>
 
-# If you want to use GPL v2 or later for the /debian/* files use 
+# If you want to use GPL v2 or later for the /debian/* files use
 # the following clauses, or change it to suit. Delete these two lines
 Files: debian/*
 Copyright: 2015 Steffen Moeller <moeller at debian.org>

Modified: trunk/packages/rna-star/trunk/debian/install
===================================================================
--- trunk/packages/rna-star/trunk/debian/install	2015-01-29 13:16:51 UTC (rev 18622)
+++ trunk/packages/rna-star/trunk/debian/install	2015-01-29 13:26:47 UTC (rev 18623)
@@ -0,0 +1 @@
+