[med-svn] r18628 - trunk/packages/rna-star/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-01-29 22:26:45 +0000 (Thu, 29 Jan 2015)
New Revision: 18628

Removed:
   trunk/packages/rna-star/trunk/debian/files
Modified:
   trunk/packages/rna-star/trunk/debian/control
   trunk/packages/rna-star/trunk/debian/install
   trunk/packages/rna-star/trunk/debian/rules
Log:
Try some tricks to get it builded but failed for the moment


Modified: trunk/packages/rna-star/trunk/debian/control
===================================================================
--- trunk/packages/rna-star/trunk/debian/control	2015-01-29 22:26:07 UTC (rev 18627)
+++ trunk/packages/rna-star/trunk/debian/control	2015-01-29 22:26:45 UTC (rev 18628)
@@ -4,7 +4,9 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>,
            Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 9), libhts-dev
+Build-Depends: debhelper (>= 9),
+               libhts-dev,
+               vim-common
 Standards-Version: 3.9.6
 Homepage: https://code.google.com/p/rna-star/
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/rna-star/trunk/

Deleted: trunk/packages/rna-star/trunk/debian/files
===================================================================
--- trunk/packages/rna-star/trunk/debian/files	2015-01-29 22:26:07 UTC (rev 18627)
+++ trunk/packages/rna-star/trunk/debian/files	2015-01-29 22:26:45 UTC (rev 18628)
@@ -1 +0,0 @@
-star_2.4.0i-1_amd64.deb science optional

Modified: trunk/packages/rna-star/trunk/debian/install
===================================================================
--- trunk/packages/rna-star/trunk/debian/install	2015-01-29 22:26:07 UTC (rev 18627)
+++ trunk/packages/rna-star/trunk/debian/install	2015-01-29 22:26:45 UTC (rev 18628)
@@ -1 +1 @@
-
+source/STAR	usr/bin

Modified: trunk/packages/rna-star/trunk/debian/rules
===================================================================
--- trunk/packages/rna-star/trunk/debian/rules	2015-01-29 22:26:07 UTC (rev 18627)
+++ trunk/packages/rna-star/trunk/debian/rules	2015-01-29 22:26:45 UTC (rev 18628)
@@ -4,8 +4,8 @@
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
-DPKG_EXPORT_BUILDFLAGS = 1
-include /usr/share/dpkg/buildflags.mk
+#DPKG_EXPORT_BUILDFLAGS = 1
+#include /usr/share/dpkg/buildflags.mk
 
 export CCFLAGS=-flto $(CXXFLAGS) $(CPPFLAGS) -std=c++0x
 export LDFLAGS+=-flto -pthread -lhts -lz
@@ -14,15 +14,12 @@
 	dh $@ 
 
 override_dh_auto_build:
+	mkdir -p source/htslib && ln -s /usr/include/htslib source/htslib
 	cd source && $(MAKE) CCFLAGS_common=-flto CCFLAGS="$(CCFLAGS)" LDFLAGS="$(LDFLAGS)"
 
-override_dh_auto_install:
-	mkdir -p debian/star/usr/bin/
-	cp source/STAR debian/star/usr/bin/
-	
-
 override_dh_auto_clean:
 	cd source && $(MAKE) clean
+	rm -f source/parametersDefault.xxd
 
 get-orig-source:
 	uscan --verbose --force-download --repack --compress xz