[med-svn] [khmer] 03/04: update patch

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a commit to branch master
in repository khmer.

commit f698b4a7961becf71166a34cb2efc265c6384bb2
Author: Michael R. Crusoe <mcrusoe at msu.edu>
Date:   Tue Jan 27 17:09:04 2015 -0500

    update patch
---
 debian/patches/local-libs | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/debian/patches/local-libs b/debian/patches/local-libs
index 7a96381..82916a0 100644
--- a/debian/patches/local-libs
+++ b/debian/patches/local-libs
@@ -23,19 +23,19 @@ Forwarded: <no|not-needed|url proving that it has been forwarded>
 Reviewed-By: <name and email of someone who approved the patch>
 Last-Update: <YYYY-MM-DD>
 
---- khmer-1.2.orig/setup.cfg
-+++ khmer-1.2/setup.cfg
-@@ -8,10 +8,10 @@ attr = !known_failing,!jenkins
- 
+--- khmer.orig/setup.cfg
++++ khmer/setup.cfg
+@@ -7,10 +7,10 @@
  [build_ext]
+ define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB
  undef = NO_UNIQUE_RC
 -# libraries = z,bz2
 +libraries = z,bz2
  ## if using system libraries
--include-dirs = lib:third-party/zlib:third-party/bzip2
+-include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include
 -# include-dirs = lib
-+# include-dirs = lib:third-party/zlib:third-party/bzip2
-+include-dirs = lib
++#include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include
++include-dirs = lib:third-party/seqan/core/include
  ## if using system libraries (broken)
  
  # define = NDEBUG

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/khmer.git