[med-svn] r18655 - trunk/packages/plink/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-01-31 09:57:29 +0000 (Sat, 31 Jan 2015)
New Revision: 18655

Removed:
   trunk/packages/plink/trunk/debian/plink1.1
Modified:
   trunk/packages/plink/trunk/debian/changelog
   trunk/packages/plink/trunk/debian/p-link.1
   trunk/packages/plink/trunk/debian/plink.links
Log:
Also add Debian Med manpage scope


Modified: trunk/packages/plink/trunk/debian/changelog
===================================================================
--- trunk/packages/plink/trunk/debian/changelog	2015-01-31 09:57:20 UTC (rev 18654)
+++ trunk/packages/plink/trunk/debian/changelog	2015-01-31 09:57:29 UTC (rev 18655)
@@ -1,3 +1,9 @@
+plink (1.07-5) UNRELEASED; urgency=medium
+
+  * Also create a manpage in Debian Med name space
+
+ -- Andreas Tille <tille at debian.org>  Sat, 31 Jan 2015 10:02:28 +0100
+
 plink (1.07-4) experimental; urgency=low
 
   [ Andreas Tille ]

Modified: trunk/packages/plink/trunk/debian/p-link.1
===================================================================
--- trunk/packages/plink/trunk/debian/p-link.1	2015-01-31 09:57:20 UTC (rev 18654)
+++ trunk/packages/plink/trunk/debian/p-link.1	2015-01-31 09:57:29 UTC (rev 18655)
@@ -1,20 +1,21 @@
 .\"                                      Hey, EMACS: -*- nroff -*-
 .TH P-LINK 1 "April  8, 2008"
 .SH NAME
-p-link \- whole genome SNP analysis
+plink,p-link,plink1 \- whole genome SNP analysis
 .SH SYNOPSIS
-.B p-link --help
+.B plink
+\fI--help\fR
 .SH DESCRIPTION
-
-This binary was renamed from plink to p-link because there is a name clash
+.P
+This binary was renamed from plink to p-link/plink1 because there is a name clash
 between this plink and a part of the ssh clone putty.  Please read
 /usr/share/doc/plink/README.Debian to learn more about this.
-
-P-link works on SNP datasets that have already been pre-analysed for
+.P
+Plink works on SNP datasets that have already been pre-analysed for
 their reliability and their calling to AA, BB or AB. It finds associations
 with a disease of single SNPs or pairs, determines haplotype blocks or
 retrieves information on SNPs from an online repository.
-
+.P
 This manual page must be insufficient. Please use the help option for a
 quick reminder of the options of p-link or turn to its home page with
 the online documentation or the downloadable manual. 

Modified: trunk/packages/plink/trunk/debian/plink.links
===================================================================
--- trunk/packages/plink/trunk/debian/plink.links	2015-01-31 09:57:20 UTC (rev 18654)
+++ trunk/packages/plink/trunk/debian/plink.links	2015-01-31 09:57:29 UTC (rev 18655)
@@ -1,6 +1,11 @@
 # For compatibility reasons (i.e. scripts written using plink package <= 1.07-3)
-usr/lib/debian-med/bin/plink usr/bin/p-link
-usr/lib/debian-med/bin/plink usr/lib/plink/plink
+usr/lib/debian-med/bin/plink	usr/bin/p-link
+usr/lib/debian-med/bin/plink	usr/lib/plink/plink
+# Also link the manpage to the Debian Med name space
+usr/share/man/man1/p-link.1.gz	usr/lib/debian-med/share/man/man1/plink.1.gz
 
 # To be consistent with the name of new plink 1.9 and 2
-usr/lib/debian-med/bin/plink usr/bin/plink1
+usr/lib/debian-med/bin/plink	usr/bin/plink1
+
+# Have only a single manpage for all name variants
+usr/share/man/man1/p-link.1.gz	usr/share/man/man1/plink1.1.gz
\ No newline at end of file

Deleted: trunk/packages/plink/trunk/debian/plink1.1
===================================================================
--- trunk/packages/plink/trunk/debian/plink1.1	2015-01-31 09:57:20 UTC (rev 18654)
+++ trunk/packages/plink/trunk/debian/plink1.1	2015-01-31 09:57:29 UTC (rev 18655)
@@ -1,29 +0,0 @@
-.\"                                      Hey, EMACS: -*- nroff -*-
-.TH PLINK1 1 "April  8, 2008"
-.SH NAME
-plink1 \- whole genome SNP analysis
-.SH SYNOPSIS
-.B plink1 --help
-.SH DESCRIPTION
-
-This binary was renamed from plink to plink1 because there is a name clash
-between this plink and a part of the ssh clone putty.  Please read
-/usr/share/doc/plink/README.Debian to learn more about this.
-
-Plink1 works on SNP datasets that have already been pre-analysed for
-their reliability and their calling to AA, BB or AB. It finds associations
-with a disease of single SNPs or pairs, determines haplotype blocks or
-retrieves information on SNPs from an online repository.
-
-This manual page must be insufficient. Please use the help option for a
-quick reminder of the options of plink1 or turn to its home page with
-the online documentation or the downloadable manual. 
-
-.SH SEE ALSO
-.BR http://pngu.mgh.harvard.edu/~purcell/plink
-
-.SH AUTHOR
-plink was written by Shaun Purcell <plink at chgr.mgh.harvard.edu>
-.PP
-This manual page was written by Steffen Moeller <moeller at debian.org>,
-for the Debian project (but may be used by others).