[med-svn] r18658 - trunk/packages/biojava4-live/trunk/debian
Olivier Sallou
osallou at moszumanska.debian.org
Sat Jan 31 10:13:01 UTC 2015
Author: osallou
Date: 2015-01-31 10:13:01 +0000 (Sat, 31 Jan 2015)
New Revision: 18658
Added:
trunk/packages/biojava4-live/trunk/debian/libbiojava4-java-doc.doc-base
trunk/packages/biojava4-live/trunk/debian/libbiojava4-java-doc.install
trunk/packages/biojava4-live/trunk/debian/libbiojava4.0-java.jlibs
Removed:
trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.doc-base
trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.install
trunk/packages/biojava4-live/trunk/debian/libbiojava3.0-java.jlibs
Modified:
trunk/packages/biojava4-live/trunk/debian/rules
Log:
mv from biojava3 to biojava4
Deleted: trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.doc-base
===================================================================
--- trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.doc-base 2015-01-31 10:08:31 UTC (rev 18657)
+++ trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.doc-base 2015-01-31 10:13:01 UTC (rev 18658)
@@ -1,26 +0,0 @@
-Document: biojava3
-Title: biojava3 API
-Author: BioJava developers
-Abstract: Javadoc-generated API for the BioJava library.
- BioJava is an open-source project dedicated to providing a Java framework
- for processing biological data. It includes objects for manipulating
- sequences, file parsers, DAS client and server support, access to BioSQL
- and Ensembl databases, and powerful analysis and statistical routines
- including a dynamic programming toolkit.
- .
- BioJava is provided by a vibrant community which meets annually at
- the Bioinformatics Open Source Conference (BOSC) that traditionally
- accompanies the Intelligent Systems in Molecular Biology (ISMB)
- meeting. Much like BioPerl, the employment of this library is valuable
- for everybody active in the field because of the many tricks of the
- trade one learns just by communicating on the mailing list.
- .
- If using BioJava, please cite: R.C.G. Holland, T. Down, M. Pocock,
- A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates,
- M. Heuer; M.J. Schreiber (2008) "BioJava: an Open-Source Framework
- for Bioinformatics" Bioinformatics 24(18):2096-2097.
-Section: Science/Biology
-
-Format: HTML
-Index: /usr/share/doc/libbiojava3-java/api/index.html
-Files: /usr/share/doc/libbiojava3-java/api/*.html /usr/share/doc/libbiojava3-java/api/*/*/*/*.html /usr/share/doc/libbiojava3-java/api/*/*/*/*/*.html /usr/share/doc/libbiojava3-java/api/*/*/*/*/*/*.html /usr/share/doc/libbiojava3-java/api/*/*/*/*/*/*/*/*.html
Deleted: trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.install
===================================================================
--- trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.install 2015-01-31 10:08:31 UTC (rev 18657)
+++ trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.install 2015-01-31 10:13:01 UTC (rev 18658)
@@ -1,3 +0,0 @@
-doc/biojava/* usr/share/doc/libbiojava3-java/api
-
-
Deleted: trunk/packages/biojava4-live/trunk/debian/libbiojava3.0-java.jlibs
===================================================================
--- trunk/packages/biojava4-live/trunk/debian/libbiojava3.0-java.jlibs 2015-01-31 10:08:31 UTC (rev 18657)
+++ trunk/packages/biojava4-live/trunk/debian/libbiojava3.0-java.jlibs 2015-01-31 10:13:01 UTC (rev 18658)
@@ -1,12 +0,0 @@
-dist/biojava3-forester.jar
-dist/biojava3-core.jar
-dist/biojava3-phylo.jar
-dist/biojava3-alignment.jar
-dist/biojava3-aa-prop.jar
-dist/biojava3-genome.jar
-dist/biojava3-sequencing.jar
-dist/biojava3-structure.jar
-dist/biojava3-structure-gui.jar
-dist/biojava3-modfinder.jar
-dist/biojava3-protein-disorder.jar
-dist/biojava3-ws.jar
Copied: trunk/packages/biojava4-live/trunk/debian/libbiojava4-java-doc.doc-base (from rev 18647, trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.doc-base)
===================================================================
--- trunk/packages/biojava4-live/trunk/debian/libbiojava4-java-doc.doc-base (rev 0)
+++ trunk/packages/biojava4-live/trunk/debian/libbiojava4-java-doc.doc-base 2015-01-31 10:13:01 UTC (rev 18658)
@@ -0,0 +1,26 @@
+Document: biojava4
+Title: biojava4 API
+Author: BioJava developers
+Abstract: Javadoc-generated API for the BioJava library.
+ BioJava is an open-source project dedicated to providing a Java framework
+ for processing biological data. It includes objects for manipulating
+ sequences, file parsers, DAS client and server support, access to BioSQL
+ and Ensembl databases, and powerful analysis and statistical routines
+ including a dynamic programming toolkit.
+ .
+ BioJava is provided by a vibrant community which meets annually at
+ the Bioinformatics Open Source Conference (BOSC) that traditionally
+ accompanies the Intelligent Systems in Molecular Biology (ISMB)
+ meeting. Much like BioPerl, the employment of this library is valuable
+ for everybody active in the field because of the many tricks of the
+ trade one learns just by communicating on the mailing list.
+ .
+ If using BioJava, please cite: R.C.G. Holland, T. Down, M. Pocock,
+ A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates,
+ M. Heuer; M.J. Schreiber (2008) "BioJava: an Open-Source Framework
+ for Bioinformatics" Bioinformatics 24(18):2096-2097.
+Section: Science/Biology
+
+Format: HTML
+Index: /usr/share/doc/libbiojava4-java/api/index.html
+Files: /usr/share/doc/libbiojava4-java/api/*.html /usr/share/doc/libbiojava4-java/api/*/*/*/*.html /usr/share/doc/libbiojava4-java/api/*/*/*/*/*.html /usr/share/doc/libbiojava4-java/api/*/*/*/*/*/*.html /usr/share/doc/libbiojava4-java/api/*/*/*/*/*/*/*/*.html
Copied: trunk/packages/biojava4-live/trunk/debian/libbiojava4-java-doc.install (from rev 18647, trunk/packages/biojava4-live/trunk/debian/libbiojava3-java-doc.install)
===================================================================
--- trunk/packages/biojava4-live/trunk/debian/libbiojava4-java-doc.install (rev 0)
+++ trunk/packages/biojava4-live/trunk/debian/libbiojava4-java-doc.install 2015-01-31 10:13:01 UTC (rev 18658)
@@ -0,0 +1,3 @@
+doc/biojava/* usr/share/doc/libbiojava4-java/api
+
+
Copied: trunk/packages/biojava4-live/trunk/debian/libbiojava4.0-java.jlibs (from rev 18647, trunk/packages/biojava4-live/trunk/debian/libbiojava3.0-java.jlibs)
===================================================================
--- trunk/packages/biojava4-live/trunk/debian/libbiojava4.0-java.jlibs (rev 0)
+++ trunk/packages/biojava4-live/trunk/debian/libbiojava4.0-java.jlibs 2015-01-31 10:13:01 UTC (rev 18658)
@@ -0,0 +1,15 @@
+dist/biojava4-forester.jar
+dist/biojava4-core.jar
+dist/biojava4-phylo.jar
+dist/biojava4-alignment.jar
+dist/biojava4-aa-prop.jar
+dist/biojava4-genome.jar
+dist/biojava4-sequencing.jar
+dist/biojava4-structure.jar
+dist/biojava4-structure-gui.jar
+dist/biojava4-modfinder.jar
+dist/biojava4-protein-disorder.jar
+dist/biojava4-protein-comparison-tool.jar
+dist/biojava4-ws.jar
+dist/biojava4-ontology.jar
+dist/biojava4-survival.jar
Modified: trunk/packages/biojava4-live/trunk/debian/rules
===================================================================
--- trunk/packages/biojava4-live/trunk/debian/rules 2015-01-31 10:08:31 UTC (rev 18657)
+++ trunk/packages/biojava4-live/trunk/debian/rules 2015-01-31 10:13:01 UTC (rev 18658)
@@ -11,21 +11,21 @@
override_dh_auto_configure:
dh_auto_configure
- sed -e 's/BJLIB/biojava-forester/g' debian/build.xml > biojava-forester/build.xml
- sed -e 's/BJLIB/biojava-aa-prop/g' debian/build.xml > biojava-aa-prop/build.xml
- sed -e 's/BJLIB/biojava-core/g' debian/build.xml > biojava-core/build.xml
- sed -e 's/BJLIB/biojava-alignment/g' debian/build.xml > biojava-alignment/build.xml
- sed -e 's/BJLIB/biojava-genome/g' debian/build.xml > biojava-genome/build.xml
- sed -e 's/BJLIB/biojava-modfinder/g' debian/build.xml > biojava-modfinder/build.xml
- sed -e 's/BJLIB/biojava-phylo/g' debian/build.xml > biojava-phylo/build.xml
- sed -e 's/BJLIB/biojava-sequencing/g' debian/build.xml > biojava-sequencing/build.xml
- sed -e 's/BJLIB/biojava-protein-disorder/g' debian/build.xml > biojava-protein-disorder/build.xml
- sed -e 's/BJLIB/biojava-structure/g' debian/build.xml > biojava-structure/build.xml
- sed -e 's/BJLIB/biojava-ws/g' debian/build.xml > biojava-ws/build.xml
- sed -e 's/BJLIB/biojava-structure-gui/g' debian/build.xml > biojava-structure-gui/build.xml
- sed -e 's/BJLIB/biojava-ontology/g' debian/build.xml > biojava-ontology/build.xml
- sed -e 's/BJLIB/biojava-protein-comparison-tool/g' debian/build.xml > biojava-protein-comparison-tool/build.xml
- sed -e 's/BJLIB/biojava-survival/g' debian/build.xml > biojava-survival/build.xml
+ sed -e 's/BJLIB/biojava4-forester/g' debian/build.xml > biojava-forester/build.xml
+ sed -e 's/BJLIB/biojava4-aa-prop/g' debian/build.xml > biojava-aa-prop/build.xml
+ sed -e 's/BJLIB/biojava4-core/g' debian/build.xml > biojava-core/build.xml
+ sed -e 's/BJLIB/biojava4-alignment/g' debian/build.xml > biojava-alignment/build.xml
+ sed -e 's/BJLIB/biojava4-genome/g' debian/build.xml > biojava-genome/build.xml
+ sed -e 's/BJLIB/biojava4-modfinder/g' debian/build.xml > biojava-modfinder/build.xml
+ sed -e 's/BJLIB/biojava4-phylo/g' debian/build.xml > biojava-phylo/build.xml
+ sed -e 's/BJLIB/biojava4-sequencing/g' debian/build.xml > biojava-sequencing/build.xml
+ sed -e 's/BJLIB/biojava4-protein-disorder/g' debian/build.xml > biojava-protein-disorder/build.xml
+ sed -e 's/BJLIB/biojava4-structure/g' debian/build.xml > biojava-structure/build.xml
+ sed -e 's/BJLIB/biojava4-ws/g' debian/build.xml > biojava-ws/build.xml
+ sed -e 's/BJLIB/biojava4-structure-gui/g' debian/build.xml > biojava-structure-gui/build.xml
+ sed -e 's/BJLIB/biojava4-ontology/g' debian/build.xml > biojava-ontology/build.xml
+ sed -e 's/BJLIB/biojava4-protein-comparison-tool/g' debian/build.xml > biojava-protein-comparison-tool/build.xml
+ sed -e 's/BJLIB/biojava4-survival/g' debian/build.xml > biojava-survival/build.xml
override_dh_auto_build:
cd biojava-forester && ant jar
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