[med-svn] r19504 - trunk/packages/plink/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-07-04 12:25:25 +0000 (Sat, 04 Jul 2015)
New Revision: 19504

Modified:
   trunk/packages/plink/trunk/debian/NEWS.Debian
   trunk/packages/plink/trunk/debian/changelog
   trunk/packages/plink/trunk/debian/control
   trunk/packages/plink/trunk/debian/docs
Log:
Upload to unstable incorporating the name space saving feature of med-config


Modified: trunk/packages/plink/trunk/debian/NEWS.Debian
===================================================================
--- trunk/packages/plink/trunk/debian/NEWS.Debian	2015-07-04 10:16:45 UTC (rev 19503)
+++ trunk/packages/plink/trunk/debian/NEWS.Debian	2015-07-04 12:25:25 UTC (rev 19504)
@@ -1,35 +1,27 @@
-Name conflict with plink1, plink1.9, plink2 and plink from ssh clone putty
-=============================================
+plink (1.07-6) unstable; urgency=medium
 
-We are facing a name clash in the Free Software universe and we have
-to circumvent. To summarize, we have:
+  Due to a name conflict with /usr/bin/plink from ssh clone putty
+  the main executable needs to be renamed.  This plink package
+  provides the binaries:
+  
+    /usr/bin/p-link
+    /usr/bin/plink1
 
-  1. The plink1 executable
-        /usr/lib/debian-med/bin/plink
-  1.1 A symbolic link to the plink1 executable
-             /usr/bin/plink1
-             /usr/bin/p-link
-             /usr/lib/plink/plink
+  To remain compatible with local user scripts using the name plink
+  the real executable is provided under the PATH
+  
+    /usr/lib/debian-med/bin/plink
 
-  2. The plink1.9 executable
-        /usr/lib/debian-med/bin/plink1.9
-  2.1 A symbolic link to the plink1.9 executable
-             /usr/bin/plink1.9
+  So if you want to use plink1 with its original name just do the
+  following:  Set the PATH variable like
 
-  3. The plink2 executable
-        /usr/lib/debian-med/bin/plink2
-  3.1 A symbolic link to the plink2 executable
-             /usr/bin/plink2
+    export PATH=/usr/lib/debian-med/bin:$PATH
 
-  4. The plink executable (from putty)
-        /usr/bin/plink
+  The PATH can be set very easily by making use of the feature of
+  the med-config package of the Debian Med Blend.  Once med-config
+  is installed for Bash users who create a file ${HOME}/.blends
+  containing the string "debian-med" the PATH is automatically
+  extended and thus users who consider themselves Debian Med users
+  have access to the originally named executables.
 
-So if you want to use plink1 with its original name just do the
-following:  Set the PATH variable like
-
-  export PATH=/usr/lib/debian-med/bin:$PATH
-
-This makes sure that scripts you are using will find the correct plink executable.
-
- -- Andreas Tille <tille at debian.org>  Tue, 31 Mar 2009 22:28:25 +0200
- -- Dylan Aïssi <bob.dybian at gmail.com>  Thu, 22 Jan 2015 08:00:59 +0100
+ -- Andreas Tille <tille at debian.org>  Sat, 04 Jul 2015 13:33:17 +0200

Modified: trunk/packages/plink/trunk/debian/changelog
===================================================================
--- trunk/packages/plink/trunk/debian/changelog	2015-07-04 10:16:45 UTC (rev 19503)
+++ trunk/packages/plink/trunk/debian/changelog	2015-07-04 12:25:25 UTC (rev 19504)
@@ -1,3 +1,10 @@
+plink (1.07-6) unstable; urgency=medium
+
+  * Recommends: med-config (>= 2.1)
+  * Update NEWS.Debian and install this file
+
+ -- Andreas Tille <tille at debian.org>  Sat, 04 Jul 2015 13:44:46 +0200
+
 plink (1.07-5) experimental; urgency=medium
 
   * Also create a manpage in Debian Med name space

Modified: trunk/packages/plink/trunk/debian/control
===================================================================
--- trunk/packages/plink/trunk/debian/control	2015-07-04 10:16:45 UTC (rev 19503)
+++ trunk/packages/plink/trunk/debian/control	2015-07-04 12:25:25 UTC (rev 19504)
@@ -1,13 +1,14 @@
 Source: plink
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>,
- Andreas Tille <tille at debian.org>,
- Charles Plessy <plessy at debian.org>,
- Dylan Aïssi <bob.dybian at gmail.com>
-Build-Depends: debhelper (>= 9), zlib1g-dev
+           Andreas Tille <tille at debian.org>,
+           Charles Plessy <plessy at debian.org>,
+           Dylan Aïssi <bob.dybian at gmail.com>
+Section: science
 Testsuite: autopkgtest
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               zlib1g-dev
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/plink/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/plink/trunk/
@@ -15,7 +16,9 @@
 
 Package: plink
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Recommends: med-config (>= 2.1)
 Description: whole-genome association analysis toolset
  plink expects as input the data from SNP (single 
  nucleotide polymorphism) chips of many individuals

Modified: trunk/packages/plink/trunk/debian/docs
===================================================================
--- trunk/packages/plink/trunk/debian/docs	2015-07-04 10:16:45 UTC (rev 19503)
+++ trunk/packages/plink/trunk/debian/docs	2015-07-04 12:25:25 UTC (rev 19504)
@@ -1 +1,2 @@
 README.txt
+debian/NEWS.Debian
\ No newline at end of file